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Items: 11


Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images.

Spagnolo DM, Al-Kofahi Y, Zhu P, Lezon TR, Gough A, Stern AM, Lee AV, Ginty F, Sarachan B, Taylor DL, Chennubhotla SC.

Cancer Res. 2017 Nov 1;77(21):e71-e74. doi: 10.1158/0008-5472.CAN-17-0676.


Optimized multiplex immunofluorescence single-cell analysis reveals tuft cell heterogeneity.

McKinley ET, Sui Y, Al-Kofahi Y, Millis BA, Tyska MJ, Roland JT, Santamaria-Pang A, Ohland CL, Jobin C, Franklin JL, Lau KS, Gerdes MJ, Coffey RJ.

JCI Insight. 2017 Jun 2;2(11). pii: 93487. doi: 10.1172/jci.insight.93487. [Epub ahead of print]


Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers.

Spagnolo DM, Gyanchandani R, Al-Kofahi Y, Stern AM, Lezon TR, Gough A, Meyer DE, Ginty F, Sarachan B, Fine J, Lee AV, Taylor DL, Chennubhotla SC.

J Pathol Inform. 2016 Nov 29;7:47. eCollection 2016.


Stromal-Based Signatures for the Classification of Gastric Cancer.

Uhlik MT, Liu J, Falcon BL, Iyer S, Stewart J, Celikkaya H, O'Mahony M, Sevinsky C, Lowes C, Douglass L, Jeffries C, Bodenmiller D, Chintharlapalli S, Fischl A, Gerald D, Xue Q, Lee JY, Santamaria-Pang A, Al-Kofahi Y, Sui Y, Desai K, Doman T, Aggarwal A, Carter JH, Pytowski B, Jaminet SC, Ginty F, Nasir A, Nagy JA, Dvorak HF, Benjamin LE.

Cancer Res. 2016 May 1;76(9):2573-86. doi: 10.1158/0008-5472.CAN-16-0022.


Cell-based quantification of molecular biomarkers in histopathology specimens.

Al-Kofahi Y, Lassoued W, Grama K, Nath SK, Zhu J, Oueslati R, Feldman M, Lee WM, Roysam B.

Histopathology. 2011 Jul;59(1):40-54. doi: 10.1111/j.1365-2559.2011.03878.x.


Laser scanning cytometry and its applications: a pioneering technology in the field of quantitative imaging cytometry.

Henriksen M, Miller B, Newmark J, Al-Kofahi Y, Holden E.

Methods Cell Biol. 2011;102:161-205. doi: 10.1016/B978-0-12-374912-3.00007-9. Review.


Improved automatic detection and segmentation of cell nuclei in histopathology images.

Al-Kofahi Y, Lassoued W, Lee W, Roysam B.

IEEE Trans Biomed Eng. 2010 Apr;57(4):841-52. doi: 10.1109/TBME.2009.2035102. Epub 2009 Oct 30.


Modulation of cultured neural networks using neurotrophin release from hydrogel-coated microelectrode arrays.

Jun SB, Hynd MR, Dowell-Mesfin NM, Al-Kofahi Y, Roysam B, Shain W, Kim SJ.

J Neural Eng. 2008 Jun;5(2):203-13. doi: 10.1088/1741-2560/5/2/011. Epub 2008 May 13.


Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue.

Bjornsson CS, Lin G, Al-Kofahi Y, Narayanaswamy A, Smith KL, Shain W, Roysam B.

J Neurosci Methods. 2008 May 15;170(1):165-78. doi: 10.1016/j.jneumeth.2007.12.024. Epub 2008 Jan 17.


Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images.

Al-Kofahi Y, Dowell-Mesfin N, Pace C, Shain W, Turner JN, Roysam B.

Cytometry A. 2008 Jan;73(1):36-43.


Effects of insertion conditions on tissue strain and vascular damage during neuroprosthetic device insertion.

Bjornsson CS, Oh SJ, Al-Kofahi YA, Lim YJ, Smith KL, Turner JN, De S, Roysam B, Shain W, Kim SJ.

J Neural Eng. 2006 Sep;3(3):196-207. Epub 2006 Jun 21.


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