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Items: 9


Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells.

Baumgartner M, Olthof AM, Aquino GS, Hyatt KC, Lemoine C, Drake K, Sturrock N, Nguyen N, Al Seesi S, Kanadia RN.

Development. 2018 Aug 28;145(17). pii: dev166322. doi: 10.1242/dev.166322.


Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.

Mandric I, Temate-Tiagueu Y, Shcheglova T, Al Seesi S, Zelikovsky A, Mandoiu II.

Bioinformatics. 2017 Oct 15;33(20):3302-3304. doi: 10.1093/bioinformatics/btx365.


Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development.

Karunakaran DK, Al Seesi S, Banday AR, Baumgartner M, Olthof A, Lemoine C, Măndoiu II, Kanadia RN.

BMC Genomics. 2016 Aug 31;17 Suppl 5:495. doi: 10.1186/s12864-016-2822-z.


Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons.

Baumgartner M, Lemoine C, Al Seesi S, Karunakaran DK, Sturrock N, Banday AR, Kilcollins AM, Mandoiu I, Kanadia RN.

Dev Neurobiol. 2015 Sep;75(9):895-907. doi: 10.1002/dneu.22257. Epub 2014 Dec 19.


Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons.

Banday AR, Baumgartner M, Al Seesi S, Karunakaran DK, Venkatesh A, Congdon S, Lemoine C, Kilcollins AM, Mandoiu I, Punzo C, Kanadia RN.

Cell Cycle. 2014;13(16):2526-41. doi: 10.4161/15384101.2015.941757.


Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates.

Al Seesi S, Tiagueu YT, Zelikovsky A, Măndoiu II.

BMC Genomics. 2014;15 Suppl 8:S2. doi: 10.1186/1471-2164-15-S8-S2. Epub 2014 Nov 13.


Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity.

Duan F, Duitama J, Al Seesi S, Ayres CM, Corcelli SA, Pawashe AP, Blanchard T, McMahon D, Sidney J, Sette A, Baker BM, Mandoiu II, Srivastava PK.

J Exp Med. 2014 Oct 20;211(11):2231-48. doi: 10.1084/jem.20141308. Epub 2014 Sep 22.


Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.

Mangul S, Caciula A, Al Seesi S, Brinza D, Mӑndoiu I, Zelikovsky A.

BMC Genomics. 2014;15 Suppl 5:S7. doi: 10.1186/1471-2164-15-S5-S7. Epub 2014 Jul 14.


Improved algorithms for parsing ESLTAGs: a grammatical model suitable for RNA pseudoknots.

Rajasekaran S, Al Seesi S, Ammar RA.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec;7(4):619-27. doi: 10.1109/TCBB.2010.54.


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