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Items: 1 to 50 of 169

1.

Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow-derived stromal stem cells.

Barrio-Hernandez I, Jafari A, Rigbolt KTG, Hallenborg P, Sanchez-Quiles V, Skovrind I, Akimov V, Kratchmarova I, Dengjel J, Kassem M, Blagoev B.

Genome Res. 2020 Jan;30(1):127-137. doi: 10.1101/gr.248286.119. Epub 2019 Dec 12.

PMID:
31831592
2.

Complete Genome Sequence of Rhodococcus erythropolis X5, a Psychrotrophic Hydrocarbon-Degrading Biosurfactant-Producing Bacterium.

Delegan Y, Valentovich L, Petrikov K, Vetrova A, Akhremchuk A, Akimov V.

Microbiol Resour Announc. 2019 Nov 27;8(48). pii: e01234-19. doi: 10.1128/MRA.01234-19.

3.

Phosphoproteomic and Functional Analyses Reveal Sperm-specific Protein Changes Downstream of Kappa Opioid Receptor in Human Spermatozoa.

Urizar-Arenaza I, Osinalde N, Akimov V, Puglia M, Candenas L, Pinto FM, Muñoa-Hoyos I, Gianzo M, Matorras R, Irazusta J, Blagoev B, Subiran N, Kratchmarova I.

Mol Cell Proteomics. 2019 Mar 15;18(Suppl 1):S118-S131. doi: 10.1074/mcp.RA118.001133. Epub 2019 Jan 8.

PMID:
30622161
4.

NADH dehydrogenase complex I is overexpressed in incipient metastatic murine colon cancer cells.

Marquez J, Kratchmarova I, Akimov V, Unda F, Ibarretxe G, Clerigué AS, Osinalde N, Badiola I.

Oncol Rep. 2019 Feb;41(2):742-752. doi: 10.3892/or.2018.6892. Epub 2018 Nov 27.

5.

UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites.

Akimov V, Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B.

Nat Struct Mol Biol. 2018 Jul;25(7):631-640. doi: 10.1038/s41594-018-0084-y. Epub 2018 Jul 2.

PMID:
29967540
6.
7.

Data on mass spectrometry-based proteomics for studying the involvement of CYLD in the ubiquitination events downstream of EGFR activation.

Sanchez-Quiles V, Osinalde N, Akimov V, Kratchmarova I, Blagoev B.

Data Brief. 2018 Apr 25;18:1856-1863. doi: 10.1016/j.dib.2018.04.049. eCollection 2018 Jun.

8.

StUbEx PLUS-A Modified Stable Tagged Ubiquitin Exchange System for Peptide Level Purification and In-Depth Mapping of Ubiquitination Sites.

Akimov V, Olsen LCB, Hansen SVF, Barrio-Hernandez I, Puglia M, Jensen SS, Solov'yov IA, Kratchmarova I, Blagoev B.

J Proteome Res. 2018 Jan 5;17(1):296-304. doi: 10.1021/acs.jproteome.7b00566. Epub 2017 Nov 1.

PMID:
29091453
9.

[Adhesive disease of the peritoneum: modern view at pathogenesis and treatment].

Lutsevich OE, Akimov VP, Shirinsky VG, Bichev AA.

Khirurgiia (Mosk). 2017;(10):100-108. doi: 10.17116/hirurgia201710100-108. Review. Russian. No abstract available.

PMID:
29076493
10.

Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor.

Sanchez-Quiles V, Akimov V, Osinalde N, Francavilla C, Puglia M, Barrio-Hernandez I, Kratchmarova I, Olsen JV, Blagoev B.

Mol Cell Proteomics. 2017 Aug;16(8):1433-1446. doi: 10.1074/mcp.M116.066423. Epub 2017 Jun 1.

11.

Complete Genome and Methylome Analysis of Psychrotrophic Bacterial Isolates from Lake Untersee in Antarctica.

Fomenkov A, Akimov VN, Vasilyeva LV, Andersen DT, Vincze T, Roberts RJ.

Genome Announc. 2017 Mar 16;5(11). pii: e01753-16. doi: 10.1128/genomeA.01753-16.

12.

Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines.

Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I.

J Proteome Res. 2017 Jan 6;16(1):106-121. doi: 10.1021/acs.jproteome.6b00233. Epub 2016 Aug 18.

PMID:
27463037
13.

[Thermotolerant oil-degrading bacteria isolated from soil and water of geographically distant regions].

Delegan YA, Vetrova AA, Akimov VN, Titok MA, Filonov AE, Boronin AM.

Prikl Biokhim Mikrobiol. 2016 Jul-Aug;52(4):383-91. Russian.

PMID:
29512982
14.

Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes.

Osinalde N, Mitxelena J, Sánchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Zubiaga AM, Blagoev B, Kratchmarova I.

Mol Cell Proteomics. 2016 Jun;15(6):2076-92. doi: 10.1074/mcp.M115.057158. Epub 2016 Apr 11.

15.

[Laparoscopic adhesiolysis and prevention of abdominal adhesions by using mechanical barriers].

Nazarenko AA, Akimov VP.

Khirurgiia (Mosk). 2016;(8):83-85. doi: 10.17116/hirurgia2016883-85. Russian.

PMID:
28635702
16.

SILAC-based quantification of changes in protein tyrosine phosphorylation induced by Interleukin-2 (IL-2) and IL-15 in T-lymphocytes.

Osinalde N, Sánchez-Quiles V, Akimov V, Blagoev B, Kratchmarova I.

Data Brief. 2015 Aug 22;5:53-8. doi: 10.1016/j.dib.2015.08.007. eCollection 2015 Dec.

17.

Spirochaeta sinaica sp. nov., a halophilic spirochaete isolated from a cyanobacterial mat.

Dubinina G, Grabovich M, Leshcheva N, Gronow S, Gavrish E, Akimov V.

Int J Syst Evol Microbiol. 2015 Nov;65(11):3872-3877. doi: 10.1099/ijsem.0.000506. Epub 2015 Aug 4.

PMID:
26243077
18.

Improving the performance of small amputations in complicated forms of diabetic foot.

Gvazava T, Smirnov G, Petrova V, Remezov A, Akimov V.

Georgian Med News. 2015 Mar;(240):7-11.

PMID:
25879550
19.

[Dominant phylotypes in the 16S rRNA gene clone libraries from bacterial mats of the Uzon caldera (Kamchatka, Russia) hydrothermal springs].

Akimov VN, Podosokorskaia OA, Shliapnikov MG, Gal'chenko VF.

Mikrobiologiia. 2013 Nov-Dec;82(6):707-14. Russian.

PMID:
25509409
20.

[Prokaryotic community of subglacial bottom sediments of Antarctic Lake Untersee: detection by cultural and direct microscopic techniques].

Muliukin AL, Demkina EV, Manucharova NA, Akimov VN, Andersen D, McKay C, Gal'chenko VF.

Mikrobiologiia. 2014 Mar-Apr;83(2):215-24. Russian.

PMID:
25423725
21.

Phosphorylation site dynamics of early T-cell receptor signaling.

Chylek LA, Akimov V, Dengjel J, Rigbolt KT, Hu B, Hlavacek WS, Blagoev B.

PLoS One. 2014 Aug 22;9(8):e104240. doi: 10.1371/journal.pone.0104240. eCollection 2014.

22.

Simultaneous dissection and comparison of IL-2 and IL-15 signaling pathways by global quantitative phosphoproteomics.

Osinalde N, Sanchez-Quiles V, Akimov V, Guerra B, Blagoev B, Kratchmarova I.

Proteomics. 2015 Jan;15(2-3):520-31. doi: 10.1002/pmic.201400194. Epub 2014 Sep 30.

PMID:
25142963
23.

StUbEx: Stable tagged ubiquitin exchange system for the global investigation of cellular ubiquitination.

Akimov V, Henningsen J, Hallenborg P, Rigbolt KT, Jensen SS, Nielsen MM, Kratchmarova I, Blagoev B.

J Proteome Res. 2014 Sep 5;13(9):4192-204. doi: 10.1021/pr500549h. Epub 2014 Aug 15.

PMID:
25093938
24.

[The discovery of phages in the bacterial population in lake Untersee (Antarctica)].

Filippova SN, Surgucheva NA, Kulikov EE, Sorokin VV, Akimov VN, Bej AK, McKay C, Andersen D, Gal'chenko VF.

Mikrobiologiia. 2013 May-Jun;82(3):366-9. Russian. No abstract available.

PMID:
24466739
25.

JMJD1C demethylates MDC1 to regulate the RNF8 and BRCA1-mediated chromatin response to DNA breaks.

Watanabe S, Watanabe K, Akimov V, Bartkova J, Blagoev B, Lukas J, Bartek J.

Nat Struct Mol Biol. 2013 Dec;20(12):1425-33. doi: 10.1038/nsmb.2702. Epub 2013 Nov 17.

PMID:
24240613
26.

Structure of the O-polysaccharide of Pseudomonas mandelii CYar1 containing 3,6-dideoxy-4-C-[(S)-1-hydroxyethyl]-D-xylo-hexose (yersiniose A).

Kondakova AN, Drutskaya MS, Shashkov AS, Nedospasov SA, Akimov VN, Arbatsky NP, Galchenko VF, Knirel YA.

Carbohydr Res. 2013 Nov 15;381:138-41. doi: 10.1016/j.carres.2013.08.016. Epub 2013 Aug 25.

PMID:
24096274
27.

The chromatin scaffold protein SAFB1 renders chromatin permissive for DNA damage signaling.

Altmeyer M, Toledo L, Gudjonsson T, Grøfte M, Rask MB, Lukas C, Akimov V, Blagoev B, Bartek J, Lukas J.

Mol Cell. 2013 Oct 24;52(2):206-20. doi: 10.1016/j.molcel.2013.08.025. Epub 2013 Sep 19.

28.

[Treatment of giant diaphragmatic hernia].

Toidze VV, Vasiukova EL, Kashchenko VA, Akimov VP, Volkov AM.

Vestn Khir Im I I Grek. 2013;172(6):21-5. Russian.

PMID:
24738197
29.

Specific features of mandible structure and elemental composition in the polyphagous amphipod Acanthogammarus grewingkii endemic to Lake Baikal.

Mekhanikova IV, Andreev DS, Belozerova OY, Mikhlin YL, Lipko SV, Klimenkov IV, Akimov VV, Kargin VF, Mazurova YV, Tauson VL, Likhoshway YV.

PLoS One. 2012;7(8):e43073. doi: 10.1371/journal.pone.0043073. Epub 2012 Aug 10.

30.

Mdm2 controls CREB-dependent transactivation and initiation of adipocyte differentiation.

Hallenborg P, Feddersen S, Francoz S, Murano I, Sundekilde U, Petersen RK, Akimov V, Olson MV, Lozano G, Cinti S, Gjertsen BT, Madsen L, Marine JC, Blagoev B, Kristiansen K.

Cell Death Differ. 2012 Aug;19(8):1381-9. doi: 10.1038/cdd.2012.15. Epub 2012 Mar 2.

31.

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.

Dengjel J, Høyer-Hansen M, Nielsen MO, Eisenberg T, Harder LM, Schandorff S, Farkas T, Kirkegaard T, Becker AC, Schroeder S, Vanselow K, Lundberg E, Nielsen MM, Kristensen AR, Akimov V, Bunkenborg J, Madeo F, Jäättelä M, Andersen JS.

Mol Cell Proteomics. 2012 Mar;11(3):M111.014035. doi: 10.1074/mcp.M111.014035. Epub 2012 Feb 6.

32.

[Novel ultramicrobacteria, strains NF4 and NF5, of the genus Chryseobacterium: Facultative epibionts of Bacillus subtilis ].

Suzina NE, Duda VI, Esikova TZ, Shorokhova AP, Gafarov AB, Oleĭnikov RR, Akimov VN, Abashina TN, Polivtseva VN, Boronin AM.

Mikrobiologiia. 2011 Jul-Aug;80(4):529-42. Russian. No abstract available.

PMID:
22073555
33.

Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics.

Akimov V, Rigbolt KT, Nielsen MM, Blagoev B.

Mol Biosyst. 2011 Dec;7(12):3223-33. doi: 10.1039/c1mb05185g. Epub 2011 Sep 28.

PMID:
21956701
34.

[Evaluation Of Taxonomic Diversity Of Stalk-producing Bacteria Of Genera Brevundimonas And Caulobacter Isolated From Various Eurasian Ecosystems Using 16S rRNA Analysis].

Ariskina EV, Chernousova EIu, Lapteva NA, Akimov VN.

Mikrobiologiia. 2011 May-Jun;80(3):396-402. Russian. No abstract available.

PMID:
21861378
35.

[Taxonomical and ecological characterization of Cyanobacteria from some semi-saline and saline lakes of the Southern Transbaikal region].

Tsyrenova DD, Brianskaia AV, Namsaraev ZB, Akimov VN.

Mikrobiologiia. 2011 Mar-Apr;80(2):230-40. Russian. No abstract available.

PMID:
21774187
36.

[Specific features of medico-diagnostic strategy for cholesterosis of the gallbladder].

Mispakhov GB, Borisov AE, Akimov VP, Nazarenko AA.

Vestn Khir Im I I Grek. 2011;170(2):25-8. Russian.

PMID:
21674929
37.

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B.

Sci Signal. 2011 Mar 15;4(164):rs3. doi: 10.1126/scisignal.2001570.

38.

Desulfovibrio arcticus sp. nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg.

Pecheritsyna SA, Rivkina EM, Akimov VN, Shcherbakova VA.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):33-7. doi: 10.1099/ijs.0.021451-0. Epub 2011 Feb 11.

PMID:
21317277
39.

Biodiversity and monitoring of colorless filamentous bacteria in sulfide aquatic systems of North Caucasus region.

Chernousova EY, Akimov VN, Gridneva EV, Dubinina GA, Grabovich MY.

Mikrobiologiia. 2010 Sep-Oct;79(5):682-7.

PMID:
21090509
40.

Anoxybacillus mongoliensis sp. nov., a novel thermophilic proteinase producing bacterium isolated from alkaline hot spring, central Mongolia.

Namsaraev ZB, Babasanova OB, Dunaevsky YE, Akimov VN, Barkhutova DD, Gorlenko VM, Namsaraev BB.

Mikrobiologiia. 2010 Jul-Aug;79(4):516-23.

PMID:
21058505
41.
42.

[Xanthobacter xylophilus sp.nov.--an xylotrophic myco-bacterial association from fresh water].

Zaĭchikova MV, Berestovskaia IuIu, Akimov VN, Kizilova AK, Vasil'eva LV.

Mikrobiologiia. 2010 Jan-Feb;79(1):89-95. Russian. No abstract available.

PMID:
20411665
43.

Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring.

Lavrinenko K, Chernousova E, Gridneva E, Dubinina G, Akimov V, Kuever J, Lysenko A, Grabovich M.

Int J Syst Evol Microbiol. 2010 Dec;60(Pt 12):2832-7. doi: 10.1099/ijs.0.018853-0. Epub 2010 Jan 15.

PMID:
20081019
44.

Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs.

Chernousova E, Gridneva E, Grabovich M, Dubinina G, Akimov V, Rossetti S, Kuever J.

Int J Syst Evol Microbiol. 2009 Dec;59(Pt 12):3128-35. doi: 10.1099/ijs.0.009456-0. Epub 2009 Jul 30.

PMID:
19643883
45.

Marinospirillum celere sp. nov., a novel haloalkaliphilic, helical bacterium isolated from Mono Lake.

Namsaraev Z, Akimov V, Tsapin A, Barinova E, Nealson K, Gorlenko V.

Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2329-32. doi: 10.1099/ijs.0.006825-0. Epub 2009 Jul 20.

PMID:
19620364
46.

A cytological characterization of the parasitic action of ultramicrobacteria NF1 and NF3 of the genus Kaistia on chemoorganotrophic and phototrophic bacteria.

Duda VI, Suzina NE, Esikova TZ, Akimov VN, Oleinikov RR, Polivtseva VN, Abashina TN, Shorokhova AP, Boronin AM.

FEMS Microbiol Ecol. 2009 Aug;69(2):180-93. doi: 10.1111/j.1574-6941.2009.00696.x. Epub 2009 Apr 29.

47.

[Ecophysiology of lithotrophic sulfur-oxidizing Sphaerotilus species from sulfide springs in the Northern Caucasus].

Gridneva EV, Grabovich MIu, Dubinina GA, Chernousova EIu, Akimov VN.

Mikrobiologiia. 2009 Jan-Feb;78(1):89-97. Russian.

PMID:
19334601
48.

[A new view on pathogenesis of dumping-syndrome].

Akimov VP, Dvaladze LG, Shengelia TD, Veselov IuE.

Vestn Khir Im I I Grek. 2008;167(6):22-5. Russian.

PMID:
19241810
49.

[Ecophysiology and polymorphism of the unicellular extremely natronophilic cyanobacterium Euhalothece sp. Z-M001 from Lake Magadi].

Mikhodiuk OS, Gerasimenko LM, Akimov VN, Ivanovskiĭ RN, Zavarzin GA.

Mikrobiologiia. 2008 Nov-Dec;77(6):805-13. Russian.

PMID:
19137720
50.

[Benign polypoid formations of the gallbladder].

Borisov AE, Akimov VP, Vystupets BV, Mispakhov GB.

Vestn Khir Im I I Grek. 2008;167(5):104-8. Review. Russian. No abstract available.

PMID:
19069836

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