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Dissection of Cell Death Induction by Wheat Stem Rust Resistance Protein Sr35 and Its Matching Effector AvrSr35.

Bolus S, Akhunov E, Coaker G, Dubcovsky J.

Mol Plant Microbe Interact. 2020 Feb;33(2):308-319. doi: 10.1094/MPMI-08-19-0216-R. Epub 2019 Dec 16.


Sequence-based mapping identifies a candidate transcription repressor underlying awn suppression at the B1 locus in wheat.

DeWitt N, Guedira M, Lauer E, Sarinelli M, Tyagi P, Fu D, Hao Q, Murphy JP, Marshall D, Akhunova A, Jordan K, Akhunov E, Brown-Guedira G.

New Phytol. 2020 Jan;225(1):326-339. doi: 10.1111/nph.16152. Epub 2019 Sep 27.


Identification of a candidate gene for a QTL for spikelet number per spike on wheat chromosome arm 7AL by high-resolution genetic mapping.

Kuzay S, Xu Y, Zhang J, Katz A, Pearce S, Su Z, Fraser M, Anderson JA, Brown-Guedira G, DeWitt N, Peters Haugrud A, Faris JD, Akhunov E, Bai G, Dubcovsky J.

Theor Appl Genet. 2019 Sep;132(9):2689-2705. doi: 10.1007/s00122-019-03382-5. Epub 2019 Jun 28.


Gene editing of the wheat homologs of TONNEAU1-recruiting motif encoding gene affects grain shape and weight in wheat.

Wang W, Pan Q, Tian B, He F, Chen Y, Bai G, Akhunova A, Trick HN, Akhunov E.

Plant J. 2019 Oct;100(2):251-264. doi: 10.1111/tpj.14440. Epub 2019 Jul 28.


Publisher Correction: Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome.

He F, Pasam R, Shi F, Kant S, Keeble-Gagnere G, Kay P, Forrest K, Fritz A, Hucl P, Wiebe K, Knox R, Cuthbert R, Pozniak C, Akhunova A, Morrell PL, Davies JP, Webb SR, Spangenberg G, Hayes B, Daetwyler H, Tibbits J, Hayden M, Akhunov E.

Nat Genet. 2019 Jul;51(7):1194. doi: 10.1038/s41588-019-0463-2.


Analysis of recombinant inbred line populations derived from wheat landraces to identify new genes for wheat stem sawfly resistance.

Varella AC, Weaver DK, Blake NK, Hofland ML, Heo HY, Cook JP, Lamb PF, Jordan KW, Akhunov E, Chao S, Talbert LE.

Theor Appl Genet. 2019 Aug;132(8):2195-2207. doi: 10.1007/s00122-019-03347-8. Epub 2019 May 2.


Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome.

He F, Pasam R, Shi F, Kant S, Keeble-Gagnere G, Kay P, Forrest K, Fritz A, Hucl P, Wiebe K, Knox R, Cuthbert R, Pozniak C, Akhunova A, Morrell PL, Davies JP, Webb SR, Spangenberg G, Hayes B, Daetwyler H, Tibbits J, Hayden M, Akhunov E.

Nat Genet. 2019 May;51(5):896-904. doi: 10.1038/s41588-019-0382-2. Epub 2019 May 1. Erratum in: Nat Genet. 2019 Jul;51(7):1194.


Isolation by Distance, Source-Sink Population Dynamics and Dispersal Facilitation by Trade Routes: Impact on Population Genetic Structure of a Stored Grain Pest.

Cordeiro EMG, Campbell JF, Phillips T, Akhunov E.

G3 (Bethesda). 2019 May 7;9(5):1457-1468. doi: 10.1534/g3.118.200892.


Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat.

Gardiner LJ, Brabbs T, Akhunov A, Jordan K, Budak H, Richmond T, Singh S, Catchpole L, Akhunov E, Hall A.

Gigascience. 2019 Apr 1;8(4). pii: giz018. doi: 10.1093/gigascience/giz018.


Transgenerational CRISPR-Cas9 Activity Facilitates Multiplex Gene Editing in Allopolyploid Wheat.

Wang W, Pan Q, He F, Akhunova A, Chao S, Trick H, Akhunov E.

CRISPR J. 2018 Feb 1;1(1):65-74. doi: 10.1089/crispr.2017.0010.


Genotype Imputation in Winter Wheat Using First-Generation Haplotype Map SNPs Improves Genome-Wide Association Mapping and Genomic Prediction of Traits.

Nyine M, Wang S, Kiani K, Jordan K, Liu S, Byrne P, Haley S, Baenziger S, Chao S, Bowden R, Akhunov E.

G3 (Bethesda). 2019 Jan 9;9(1):125-133. doi: 10.1534/g3.118.200664.


Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat.

Wang W, Simmonds J, Pan Q, Davidson D, He F, Battal A, Akhunova A, Trick HN, Uauy C, Akhunov E.

Theor Appl Genet. 2018 Nov;131(11):2463-2475. doi: 10.1007/s00122-018-3166-7. Epub 2018 Aug 22.


The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping.

Jordan KW, Wang S, He F, Chao S, Lun Y, Paux E, Sourdille P, Sherman J, Akhunova A, Blake NK, Pumphrey MO, Glover K, Dubcovsky J, Talbert L, Akhunov ED.

Plant J. 2018 Sep;95(6):1039-1054. doi: 10.1111/tpj.14009. Epub 2018 Jul 19.


Identification and validation of QTL for grain yield and plant water status under contrasting water treatments in fall-sown spring wheats.

Zhang J, Gizaw SA, Bossolini E, Hegarty J, Howell T, Carter AH, Akhunov E, Dubcovsky J.

Theor Appl Genet. 2018 Aug;131(8):1741-1759. doi: 10.1007/s00122-018-3111-9. Epub 2018 May 16.


A comparison between genotyping-by-sequencing and array-based scoring of SNPs for genomic prediction accuracy in winter wheat.

Elbasyoni IS, Lorenz AJ, Guttieri M, Frels K, Baenziger PS, Poland J, Akhunov E.

Plant Sci. 2018 May;270:123-130. doi: 10.1016/j.plantsci.2018.02.019. Epub 2018 Feb 21.


Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99.

Salcedo A, Rutter W, Wang S, Akhunova A, Bolus S, Chao S, Anderson N, De Soto MF, Rouse M, Szabo L, Bowden RL, Dubcovsky J, Akhunov E.

Science. 2017 Dec 22;358(6370):1604-1606. doi: 10.1126/science.aao7294.


Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.

Hu Y, Wu Q, Peng Z, Sprague SA, Wang W, Park J, Akhunov E, Jagadish KSV, Nakata PA, Cheng N, Hirschi KD, White FF, Park S.

Sci Rep. 2017 Nov 21;7(1):15950. doi: 10.1038/s41598-017-16230-7.


Major structural genomic alterations can be associated with hybrid speciation in Aegilops markgrafii (Triticeae).

Danilova TV, Akhunova AR, Akhunov ED, Friebe B, Gill BS.

Plant J. 2017 Oct;92(2):317-330. doi: 10.1111/tpj.13657. Epub 2017 Sep 22.


Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.


Building Ultra-High-Density Linkage Maps Based on Efficient Filtering of Trustable Markers.

Ronin YI, Mester DI, Minkov DG, Akhunov E, Korol AB.

Genetics. 2017 Jul;206(3):1285-1295. doi: 10.1534/genetics.116.197491. Epub 2017 May 16.


Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses.

Rutter WB, Salcedo A, Akhunova A, He F, Wang S, Liang H, Bowden RL, Akhunov E.

BMC Genomics. 2017 Apr 12;18(1):291. doi: 10.1186/s12864-017-3678-6.


Exome sequence genotype imputation in globally diverse hexaploid wheat accessions.

Shi F, Tibbits J, Pasam RK, Kay P, Wong D, Petkowski J, Forrest KL, Hayes BJ, Akhunova A, Davies J, Webb S, Spangenberg GC, Akhunov E, Hayden MJ, Daetwyler HD.

Theor Appl Genet. 2017 Jul;130(7):1393-1404. doi: 10.1007/s00122-017-2895-3. Epub 2017 Apr 4.


A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A.

Balcárková B, Frenkel Z, Škopová M, Abrouk M, Kumar A, Chao S, Kianian SF, Akhunov E, Korol AB, Doležel J, Valárik M.

Front Plant Sci. 2017 Jan 10;7:2063. doi: 10.3389/fpls.2016.02063. eCollection 2016.


Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment.

Hofstad AN, Nussbaumer T, Akhunov E, Shin S, Kugler KG, Kistler HC, Mayer KF, Muehlbauer GJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.05.0032.


The 2NS Translocation from Aegilops ventricosa Confers Resistance to the Triticum Pathotype of Magnaporthe oryzae.

Cruz CD, Peterson GL, Bockus WW, Kankanala P, Dubcovsky J, Jordan KW, Akhunov E, Chumley F, Baldelomar FD, Valent B.

Crop Sci. 2016;56(3):990-1000. Epub 2016 Mar 23.


Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight.

Rawat N, Pumphrey MO, Liu S, Zhang X, Tiwari VK, Ando K, Trick HN, Bockus WW, Akhunov E, Anderson JA, Gill BS.

Nat Genet. 2016 Dec;48(12):1576-1580. doi: 10.1038/ng.3706. Epub 2016 Oct 24.


Markers Linked to Wheat Stem Rust Resistance Gene Sr11 Effective to Puccinia graminis f. sp. tritici Race TKTTF.

Nirmala J, Chao S, Olivera P, Babiker EM, Abeyo B, Tadesse Z, Imtiaz M, Talbert L, Blake NK, Akhunov E, Pumphrey MO, Jin Y, Rouse MN.

Phytopathology. 2016 Nov;106(11):1352-1358. Epub 2016 Jul 27.


Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley.

Nice LM, Steffenson BJ, Brown-Guedira GL, Akhunov ED, Liu C, Kono TJ, Morrell PL, Blake TK, Horsley RD, Smith KP, Muehlbauer GJ.

Genetics. 2016 Jul;203(3):1453-67. doi: 10.1534/genetics.116.190736. Epub 2016 May 10.


A whole-genome, radiation hybrid mapping resource of hexaploid wheat.

Tiwari VK, Heesacker A, Riera-Lizarazu O, Gunn H, Wang S, Wang Y, Gu YQ, Paux E, Koo DH, Kumar A, Luo MC, Lazo G, Zemetra R, Akhunov E, Friebe B, Poland J, Gill BS, Kianian S, Leonard JM.

Plant J. 2016 Apr;86(2):195-207. doi: 10.1111/tpj.13153.


Evaluation and Association Mapping of Resistance to Tan Spot and Stagonospora Nodorum Blotch in Adapted Winter Wheat Germplasm.

Liu Z, El-Basyoni I, Kariyawasam G, Zhang G, Fritz A, Hansen J, Marais F, Friskop A, Chao S, Akhunov E, Baenziger PS.

Plant Dis. 2015 Oct;99(10):1333-1341. doi: 10.1094/PDIS-11-14-1131-RE. Epub 2015 Aug 20.


Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.

Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.

Plant J. 2015 Nov;84(4):733-46. doi: 10.1111/tpj.13036.


Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia.

Kippes N, Debernardi JM, Vasquez-Gross HA, Akpinar BA, Budak H, Kato K, Chao S, Akhunov E, Dubcovsky J.

Proc Natl Acad Sci U S A. 2015 Sep 29;112(39):E5401-10. doi: 10.1073/pnas.1514883112. Epub 2015 Aug 31.


Impact of the D genome and quantitative trait loci on quantitative traits in a spring durum by spring bread wheat cross.

Kalous JR, Martin JM, Sherman JD, Heo HY, Blake NK, Lanning SP, Eckhoff JL, Chao S, Akhunov E, Talbert LE.

Theor Appl Genet. 2015 Sep;128(9):1799-811. doi: 10.1007/s00122-015-2548-3. Epub 2015 Jun 3.


A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes.

Jordan KW, Wang S, Lun Y, Gardiner LJ, MacLachlan R, Hucl P, Wiebe K, Wong D, Forrest KL; IWGS Consortium, Sharpe AG, Sidebottom CH, Hall N, Toomajian C, Close T, Dubcovsky J, Akhunova A, Talbert L, Bansal UK, Bariana HS, Hayden MJ, Pozniak C, Jeddeloh JA, Hall A, Akhunov E.

Genome Biol. 2015 Feb 26;16:48. doi: 10.1186/s13059-015-0606-4.


Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing.

Li G, Wang Y, Chen MS, Edae E, Poland J, Akhunov E, Chao S, Bai G, Carver BF, Yan L.

BMC Genomics. 2015 Feb 21;16:108. doi: 10.1186/s12864-015-1297-7.


Fine mapping and characterization of Sr21, a temperature-sensitive diploid wheat resistance gene effective against the Puccinia graminis f. sp. tritici Ug99 race group.

Chen S, Rouse MN, Zhang W, Jin Y, Akhunov E, Wei Y, Dubcovsky J.

Theor Appl Genet. 2015 Apr;128(4):645-56. doi: 10.1007/s00122-015-2460-x. Epub 2015 Jan 30.


A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.

Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, Casadio R, Akhunov E, Scalabrin S, Vendramin V, Ammar K, Blanco A, Desiderio F, Distelfeld A, Dubcovsky J, Fahima T, Faris J, Korol A, Massi A, Mastrangelo AM, Morgante M, Pozniak C, N'Diaye A, Xu S, Tuberosa R.

Plant Biotechnol J. 2015 Jun;13(5):648-63. doi: 10.1111/pbi.12288. Epub 2014 Nov 26.


Ecotypes of an ecologically dominant prairie grass (Andropogon gerardii) exhibit genetic divergence across the U.S. Midwest grasslands' environmental gradient.

Gray MM, St Amand P, Bello NM, Galliart MB, Knapp M, Garrett KA, Morgan TJ, Baer SG, Maricle BR, Akhunov ED, Johnson LC.

Mol Ecol. 2014 Dec;23(24):6011-28. doi: 10.1111/mec.12993. Epub 2014 Nov 27.


Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. dicoccoides) population in Israel.

Sela H, Ezrati S, Ben-Yehuda P, Manisterski J, Akhunov E, Dvorak J, Breiman A, Korol A.

Theor Appl Genet. 2014 Nov;127(11):2453-63. doi: 10.1007/s00122-014-2389-5. Epub 2014 Sep 16.


Mapping resistance to the bird cherry-oat aphid and the greenbug in wheat using sequence-based genotyping.

Crespo-Herrera LA, Akhunov E, Garkava-Gustavsson L, Jordan KW, Smith CM, Singh RP, Ahman I.

Theor Appl Genet. 2014 Sep;127(9):1963-73. doi: 10.1007/s00122-014-2352-5. Epub 2014 Aug 12.


Tedna: a transposable element de novo assembler.

Zytnicki M, Akhunov E, Quesneville H.

Bioinformatics. 2014 Sep 15;30(18):2656-8. doi: 10.1093/bioinformatics/btu365. Epub 2014 Jun 3.


Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.

Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L.

Plant Cell. 2014 Apr;26(4):1382-1397. Epub 2014 Apr 11.


SNP Discovery for mapping alien introgressions in wheat.

Tiwari VK, Wang S, Sehgal S, Vrána J, Friebe B, Kubaláková M, Chhuneja P, Doležel J, Akhunov E, Kalia B, Sabir J, Gill BS.

BMC Genomics. 2014 Apr 10;15:273. doi: 10.1186/1471-2164-15-273.


Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.

Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, Plieske J; International Wheat Genome Sequencing Consortium, Lillemo M, Mather D, Appels R, Dolferus R, Brown-Guedira G, Korol A, Akhunova AR, Feuillet C, Salse J, Morgante M, Pozniak C, Luo MC, Dvorak J, Morell M, Dubcovsky J, Ganal M, Tuberosa R, Lawley C, Mikoulitch I, Cavanagh C, Edwards KJ, Hayden M, Akhunov E.

Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.


Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe.

Middleton CP, Senerchia N, Stein N, Akhunov ED, Keller B, Wicker T, Kilian B.

PLoS One. 2014 Mar 10;9(3):e85761. doi: 10.1371/journal.pone.0085761. eCollection 2014.


Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat.

Bruce M, Neugebauer KA, Joly DL, Migeon P, Cuomo CA, Wang S, Akhunov E, Bakkeren G, Kolmer JA, Fellers JP.

Front Plant Sci. 2014 Jan 13;4:520. doi: 10.3389/fpls.2013.00520. eCollection 2014 Jan 13.


Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.


Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group.

Saintenac C, Zhang W, Salcedo A, Rouse MN, Trick HN, Akhunov E, Dubcovsky J.

Science. 2013 Aug 16;341(6147):783-786. doi: 10.1126/science.1239022. Epub 2013 Jun 27.


Separating homeologs by phasing in the tetraploid wheat transcriptome.

Krasileva KV, Buffalo V, Bailey P, Pearce S, Ayling S, Tabbita F, Soria M, Wang S; IWGS Consortium, Akhunov E, Uauy C, Dubcovsky J.

Genome Biol. 2013 Jun 25;14(6):R66. doi: 10.1186/gb-2013-14-6-r66.


Sequence-based mapping of the polyploid wheat genome.

Saintenac C, Jiang D, Wang S, Akhunov E.

G3 (Bethesda). 2013 Jul 8;3(7):1105-14. doi: 10.1534/g3.113.005819.

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