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T7 RNA polymerase-driven inducible cell lysis for DNA transfer from Escherichia coli to Bacillus subtilis.

Juhas M, Ajioka JW.

Microb Biotechnol. 2017 Nov;10(6):1797-1808. doi: 10.1111/1751-7915.12843. Epub 2017 Aug 16.


Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure.

Pacini C, Ajioka JW, Micklem G.

BMC Bioinformatics. 2017 Apr 12;18(1):213. doi: 10.1186/s12859-017-1623-y.


Combining Genes from Multiple Phages for Improved Cell Lysis and DNA Transfer from Escherichia coli to Bacillus subtilis.

Juhas M, Wong C, Ajioka JW.

PLoS One. 2016 Oct 31;11(10):e0165778. doi: 10.1371/journal.pone.0165778. eCollection 2016.


Integrative bacterial artificial chromosomes for DNA integration into the Bacillus subtilis chromosome.

Juhas M, Ajioka JW.

J Microbiol Methods. 2016 Jun;125:1-7. doi: 10.1016/j.mimet.2016.03.017. Epub 2016 Mar 28.


High molecular weight DNA assembly in vivo for synthetic biology applications.

Juhas M, Ajioka JW.

Crit Rev Biotechnol. 2017 May;37(3):277-286. doi: 10.3109/07388551.2016.1141394. Epub 2016 Feb 10. Review.


Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.

Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD.

Nat Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147.


Characterization of Intrinsic Properties of Promoters.

Rudge TJ, Brown JR, Federici F, Dalchau N, Phillips A, Ajioka JW, Haseloff J.

ACS Synth Biol. 2016 Jan 15;5(1):89-98. doi: 10.1021/acssynbio.5b00116. Epub 2016 Jan 7.


Identification and validation of novel chromosomal integration and expression loci in Escherichia coli flagellar region 1.

Juhas M, Ajioka JW.

PLoS One. 2015 Mar 27;10(3):e0123007. doi: 10.1371/journal.pone.0123007. eCollection 2015.


NextGen sequencing reveals short double crossovers contribute disproportionately to genetic diversity in Toxoplasma gondii.

Khan A, Shaik JS, Behnke M, Wang Q, Dubey JP, Lorenzi HA, Ajioka JW, Rosenthal BM, Sibley LD.

BMC Genomics. 2014 Dec 23;15:1168. doi: 10.1186/1471-2164-15-1168.


Escherichia coli flagellar genes as target sites for integration and expression of genetic circuits.

Juhas M, Evans LD, Frost J, Davenport PW, Yarkoni O, Fraser GM, Ajioka JW.

PLoS One. 2014 Oct 28;9(10):e111451. doi: 10.1371/journal.pone.0111451. eCollection 2014.


Globally diverse Toxoplasma gondii isolates comprise six major clades originating from a small number of distinct ancestral lineages.

Su C, Khan A, Zhou P, Majumdar D, Ajzenberg D, Dardé ML, Zhu XQ, Ajioka JW, Rosenthal BM, Dubey JP, Sibley LD.

Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5844-9. doi: 10.1073/pnas.1203190109. Epub 2012 Mar 19.


A monomorphic haplotype of chromosome Ia is associated with widespread success in clonal and nonclonal populations of Toxoplasma gondii.

Khan A, Miller N, Roos DS, Dubey JP, Ajzenberg D, Dardé ML, Ajioka JW, Rosenthal B, Sibley LD.

MBio. 2011 Nov 8;2(6):e00228-11. doi: 10.1128/mBio.00228-11. Print 2011.


Genetic analyses of atypical Toxoplasma gondii strains reveal a fourth clonal lineage in North America.

Khan A, Dubey JP, Su C, Ajioka JW, Rosenthal BM, Sibley LD.

Int J Parasitol. 2011 May;41(6):645-55. doi: 10.1016/j.ijpara.2011.01.005. Epub 2011 Feb 12.


Genetic diversity of Toxoplasma gondii in animals and humans.

Sibley LD, Khan A, Ajioka JW, Rosenthal BM.

Philos Trans R Soc Lond B Biol Sci. 2009 Sep 27;364(1530):2749-61. doi: 10.1098/rstb.2009.0087. Review.


Selection at a single locus leads to widespread expansion of Toxoplasma gondii lineages that are virulent in mice.

Khan A, Taylor S, Ajioka JW, Rosenthal BM, Sibley LD.

PLoS Genet. 2009 Mar;5(3):e1000404. doi: 10.1371/journal.pgen.1000404. Epub 2009 Mar 6.


The early years of Toxoplasma research: What's past is prologue.

Morrissette NS, Ajioka JW.

Int J Parasitol. 2009 Jul 1;39(8):865-9. doi: 10.1016/j.ijpara.2009.02.010. Epub 2009 Feb 27.


A century of Toxoplasma research.

Ajioka JW, Morrissette NS.

Int J Parasitol. 2009 Jul 1;39(8):859-60. doi: 10.1016/j.ijpara.2009.02.006. Epub 2009 Feb 25. No abstract available.


New eukaryotic systematics: a phylogenetic perspective of developmental gene expression in the Apicomplexa.

Gissot M, Kim K, Schaap D, Ajioka JW.

Int J Parasitol. 2009 Jan;39(2):145-51. doi: 10.1016/j.ijpara.2008.10.002. Epub 2008 Oct 21. Review.


Neurological and behavioral abnormalities, ventricular dilatation, altered cellular functions, inflammation, and neuronal injury in brains of mice due to common, persistent, parasitic infection.

Hermes G, Ajioka JW, Kelly KA, Mui E, Roberts F, Kasza K, Mayr T, Kirisits MJ, Wollmann R, Ferguson DJ, Roberts CW, Hwang JH, Trendler T, Kennan RP, Suzuki Y, Reardon C, Hickey WF, Chen L, McLeod R.

J Neuroinflammation. 2008 Oct 23;5:48. doi: 10.1186/1742-2094-5-48.


Expression quantitative trait locus mapping of toxoplasma genes reveals multiple mechanisms for strain-specific differences in gene expression.

Boyle JP, Saeij JP, Harada SY, Ajioka JW, Boothroyd JC.

Eukaryot Cell. 2008 Aug;7(8):1403-14. doi: 10.1128/EC.00073-08. Epub 2008 Jun 13.


Population structure of Toxoplasma gondii: clonal expansion driven by infrequent recombination and selective sweeps.

Sibley LD, Ajioka JW.

Annu Rev Microbiol. 2008;62:329-51. doi: 10.1146/annurev.micro.62.081307.162925. Review.


Recent transcontinental sweep of Toxoplasma gondii driven by a single monomorphic chromosome.

Khan A, Fux B, Su C, Dubey JP, Darde ML, Ajioka JW, Rosenthal BM, Sibley LD.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14872-7. Epub 2007 Sep 5.


Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii.

Gissot M, Kelly KA, Ajioka JW, Greally JM, Kim K.

PLoS Pathog. 2007 Jun;3(6):e77.


Polymorphic secreted kinases are key virulence factors in toxoplasmosis.

Saeij JP, Boyle JP, Coller S, Taylor S, Sibley LD, Brooke-Powell ET, Ajioka JW, Boothroyd JC.

Science. 2006 Dec 15;314(5806):1780-3.


Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii.

Khan A, Böhme U, Kelly KA, Adlem E, Brooks K, Simmonds M, Mungall K, Quail MA, Arrowsmith C, Chillingworth T, Churcher C, Harris D, Collins M, Fosker N, Fraser A, Hance Z, Jagels K, Moule S, Murphy L, O'Neil S, Rajandream MA, Saunders D, Seeger K, Whitehead S, Mayr T, Xuan X, Watanabe J, Suzuki Y, Wakaguri H, Sugano S, Sugimoto C, Paulsen I, Mackey AJ, Roos DS, Hall N, Berriman M, Barrell B, Sibley LD, Ajioka JW.

Genome Res. 2006 Sep;16(9):1119-25. Epub 2006 Aug 10.


Just one cross appears capable of dramatically altering the population biology of a eukaryotic pathogen like Toxoplasma gondii.

Boyle JP, Rajasekar B, Saeij JPJ, Ajioka JW, Berriman M, Paulsen I, Roos DS, Sibley LD, White MW, Boothroyd JC.

Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10514-10519. doi: 10.1073/pnas.0510319103. Epub 2006 Jun 26.


Quality determination and the repair of poor quality spots in array experiments.

Tom BD, Gilks WR, Brooke-Powell ET, Ajioka JW.

BMC Bioinformatics. 2005 Sep 26;6:234.


Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii.

Khan A, Taylor S, Su C, Mackey AJ, Boyle J, Cole R, Glover D, Tang K, Paulsen IT, Berriman M, Boothroyd JC, Pfefferkorn ER, Dubey JP, Ajioka JW, Roos DS, Wootton JC, Sibley LD.

Nucleic Acids Res. 2005 May 23;33(9):2980-92. Print 2005.


Molecular characterization of tgd057, a novel gene from Toxoplasma gondii.

Wan KL, Chang TL, Ajioka JW.

J Biochem Mol Biol. 2004 Jul 31;37(4):474-9.


Toxoplasma gondii genomics: shedding light on pathogenesis and chemotherapy.

Ajioka JW, Fitzpatrick JM, Reitter CP.

Expert Rev Mol Med. 2001 Jan 6;2001:1-19. doi: 10.1017/S1462399401002204. No abstract available.


TgSUB2 is a Toxoplasma gondii rhoptry organelle processing proteinase.

Miller SA, Thathy V, Ajioka JW, Blackman MJ, Kim K.

Mol Microbiol. 2003 Aug;49(4):883-94.


Recent expansion of Toxoplasma through enhanced oral transmission.

Su C, Evans D, Cole RH, Kissinger JC, Ajioka JW, Sibley LD.

Science. 2003 Jan 17;299(5605):414-6.


Identification of quantitative trait loci controlling acute virulence in Toxoplasma gondii.

Su C, Howe DK, Dubey JP, Ajioka JW, Sibley LD.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10753-8. Epub 2002 Jul 29.


A family of transmembrane microneme proteins of Toxoplasma gondii contain EGF-like domains and function as escorters.

Meissner M, Reiss M, Viebig N, Carruthers VB, Toursel C, Tomavo S, Ajioka JW, Soldati D.

J Cell Sci. 2002 Feb 1;115(Pt 3):563-74.


Toxoplasma gondii myosins B/C: one gene, two tails, two localizations, and a role in parasite division.

Delbac F, Sänger A, Neuhaus EM, Stratmann R, Ajioka JW, Toursel C, Herm-Götz A, Tomavo S, Soldati T, Soldati D.

J Cell Biol. 2001 Nov 12;155(4):613-23. Epub 2001 Nov 12.


TgM2AP participates in Toxoplasma gondii invasion of host cells and is tightly associated with the adhesive protein TgMIC2.

Rabenau KE, Sohrabi A, Tripathy A, Reitter C, Ajioka JW, Tomley FM, Carruthers VB.

Mol Microbiol. 2001 Aug;41(3):537-47.


Corrigendum to "Intra and inter-specific microsatellite variation in the leishmania subgenus Viannia".

Russell R, Pilar Iribar M, Lambson B, Brewster S, Blackwell JM, Dye C, Ajioka JW.

Mol Biochem Parasitol. 2000 Apr 15;107(2):331. No abstract available.


Intra and inter-specific microsatellite variation in the Leishmania subgenus Viannia.

Russell R, Iribar MP, Lambson B, Brewster S, Blackwell JM, Dye C, Ajioka JW.

Mol Biochem Parasitol. 1999 Sep 20;103(1):71-7. Erratum in: Mol Biochem Parasitol 2000 Apr 15;107(2):331.


Toxoplasma gondii: ESTs and gene discovery.

Ajioka JW.

Int J Parasitol. 1998 Jul;28(7):1025-31. Review.


Gene discovery by EST sequencing in Toxoplasma gondii reveals sequences restricted to the Apicomplexa.

Ajioka JW, Boothroyd JC, Brunk BP, Hehl A, Hillier L, Manger ID, Marra M, Overton GC, Roos DS, Wan KL, Waterston R, Sibley LD.

Genome Res. 1998 Jan;8(1):18-28.


The protozoan phylum Apicomplexa.

Ajioka JW.

Methods. 1997 Oct;13(2):79-80. No abstract available.


Using 3' untranslated sequences to identify differentially expressed genes in Leishmania.

Coulson RM, Connor V, Ajioka JW.

Gene. 1997 Sep 1;196(1-2):159-64.


Molecular characterisation of an expressed sequence tag locus of Toxoplasma gondii encoding the micronemal protein MIC2.

Wan KL, Carruthers VB, Sibley LD, Ajioka JW.

Mol Biochem Parasitol. 1997 Feb;84(2):203-14.


Differential expression of Leishmania major beta-tubulin genes during the acquisition of promastigote infectivity.

Coulson RM, Connor V, Chen JC, Ajioka JW.

Mol Biochem Parasitol. 1996 Nov 25;82(2):227-36.


An expressed sequence tag analysis of a full-length, spliced-leader cDNA library from Leishmania major promastigotes.

Levick MP, Blackwell JM, Connor V, Coulson RM, Miles A, Smith HE, Wan KL, Ajioka JW.

Mol Biochem Parasitol. 1996 Feb-Mar;76(1-2):345-8. No abstract available.


Toxoplasma gondii expressed sequence tags: insight into tachyzoite gene expression.

Wan KL, Blackwell JM, Ajioka JW.

Mol Biochem Parasitol. 1996 Jan;75(2):179-86.


Extensive polymorphism at the Gp63 locus in field isolates of Leishmania peruviana.

Espinoza JR, Skinner AC, Davies CR, Llanos-Cuentas A, Arevalo J, Dye C, McMaster WR, Ajioka JW, Blackwell JM.

Mol Biochem Parasitol. 1995 Jun;72(1-2):203-13.


Mapping Creb-1 to chromosome 1 in the mouse.

Barton CH, Ajioka JW, Roach TI, Blackwell JM.

Genomics. 1992 Nov;14(3):790-2.


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