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Reply to Cheng and Chuang.

Avery LM, Kuti JL, Weisser M, Egli A, Rybak MJ, Zasowski EJ, Arias CA, Contreras GA, Chong PP, Aitken SL, DiPippo AJ, Wang JT, Britt NS, Nicolau DP.

Clin Infect Dis. 2019 Jan 30. doi: 10.1093/cid/ciz081. [Epub ahead of print] No abstract available.


Carbapenem versus Cefepime or Piperacillin-Tazobactam for Empiric Treatment of Bacteremia Due to Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Patients with Hematologic Malignancy.

Benanti GE, Brown ART, Shigle TL, Tarrand JJ, Bhatti MM, McDaneld PM, Shelburne SA, Aitken SL.

Antimicrob Agents Chemother. 2019 Jan 29;63(2). pii: e01813-18. doi: 10.1128/AAC.01813-18. Print 2019 Feb.


Long-distance pollen dispersal during recent colonization favors a rapid but partial recovery of genetic diversity in Picea sitchensis.

Elleouet JS, Aitken SN.

New Phytol. 2019 Apr;222(2):1088-1100. doi: 10.1111/nph.15615. Epub 2019 Jan 18.


Modularity of genes involved in local adaptation to climate despite physical linkage.

Lotterhos KE, Yeaman S, Degner J, Aitken S, Hodgins KA.

Genome Biol. 2018 Oct 5;19(1):157. doi: 10.1186/s13059-018-1545-7.


Oral versus Aerosolized Ribavirin for the Treatment of Respiratory Syncytial Virus Infections in Hematopoietic Cell Transplantation Recipients.

Foolad F, Aitken SL, Shigle TL, Prayag A, Ghantoji S, Ariza-Heredia E, Chemaly RF.

Clin Infect Dis. 2018 Sep 8. doi: 10.1093/cid/ciy760. [Epub ahead of print]


Pharmacodynamic Analysis of Daptomycin-Treated Enterococcal Bacteremia: It Is Time to Change the Breakpoint.

Avery LM, Kuti JL, Weisser M, Egli A, Rybak MJ, Zasowski EJ, Arias CA, Contreras GA, Chong PP, Aitken SL, DiPippo AJ, Wang JT, Britt NS, Nicolau DP.

Clin Infect Dis. 2018 Sep 5. doi: 10.1093/cid/ciy749. [Epub ahead of print]


Clinical Outcomes Associated With Linezolid Resistance in Leukemia Patients With Linezolid-Resistant Staphylococcus epidermidis Bacteremia.

Folan SA, Marx KR, Tverdek FP, Raad I, Mulanovich VE, Tarrand JJ, Shelburne SA, Aitken SL.

Open Forum Infect Dis. 2018 Jul 13;5(7):ofy167. doi: 10.1093/ofid/ofy167. eCollection 2018 Jul.


Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli.

Vacca A, Itoh M, Kawaji H, Arner E, Lassmann T, Daub CO, Carninci P, Forrest ARR, Hayashizaki Y; FANTOM Consortium, Aitken S, Semple CA.

Open Biol. 2018 Aug;8(8). pii: 180011. doi: 10.1098/rsob.180011.


CTCF maintains regulatory homeostasis of cancer pathways.

Aitken SJ, Ibarra-Soria X, Kentepozidou E, Flicek P, Feig C, Marioni JC, Odom DT.

Genome Biol. 2018 Aug 7;19(1):106. doi: 10.1186/s13059-018-1484-3.


Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation.

Flanagan SP, Forester BR, Latch EK, Aitken SN, Hoban S.

Evol Appl. 2017 Dec 2;11(7):1035-1052. doi: 10.1111/eva.12569. eCollection 2018 Aug. Review.


Letermovir for the prevention of cytomegalovirus infection in adult cytomegalovirus-seropositive hematopoietic stem cell transplant recipients.

Foolad F, Aitken SL, Chemaly RF.

Expert Rev Clin Pharmacol. 2018 Oct;11(10):931-941. doi: 10.1080/17512433.2018.1500897. Epub 2018 Sep 18. Review.


Mutational landscape of a chemically-induced mouse model of liver cancer.

Connor F, Rayner TF, Aitken SJ, Feig C, Lukk M, Santoyo-Lopez J, Odom DT.

J Hepatol. 2018 Oct;69(4):840-850. doi: 10.1016/j.jhep.2018.06.009. Epub 2018 Jun 26.


Outcomes associated with Clostridium difficile infection in patients with chronic liver disease.

Dotson KM, Aitken SL, Sofjan AK, Shah DN, Aparasu RR, Garey KW.

Epidemiol Infect. 2018 Jul;146(9):1101-1105. doi: 10.1017/S0950268818001036. Epub 2018 May 9.


Optoacoustics delineates murine breast cancer models displaying angiogenesis and vascular mimicry.

Quiros-Gonzalez I, Tomaszewski MR, Aitken SJ, Ansel-Bollepalli L, McDuffus LA, Gill M, Hacker L, Brunker J, Bohndiek SE.

Br J Cancer. 2018 Apr;118(8):1098-1106. doi: 10.1038/s41416-018-0033-x. Epub 2018 Mar 26.


Association of daptomycin dosing regimen and mortality in patients with VRE bacteraemia: a review.

Foolad F, Taylor BD, Shelburne SA, Arias CA, Aitken SL.

J Antimicrob Chemother. 2018 Sep 1;73(9):2277-2283. doi: 10.1093/jac/dky072.


Clonal Emergence of Invasive Multidrug-Resistant Staphylococcus epidermidis Deconvoluted via a Combination of Whole-Genome Sequencing and Microbiome Analyses.

Li X, Arias CA, Aitken SL, Galloway Peña J, Panesso D, Chang M, Diaz L, Rios R, Numan Y, Ghaoui S, DebRoy S, Bhatti MM, Simmons DE, Raad I, Hachem R, Folan SA, Sahasarabhojane P, Kalia A, Shelburne SA.

Clin Infect Dis. 2018 Jul 18;67(3):398-406. doi: 10.1093/cid/ciy089.


Future-proofing academic surgery in Australia and New Zealand: the Annual RACS Joint Academic Meeting.

Aitken S, Lee J, Smithers M.

ANZ J Surg. 2018 Mar;88(3):130-131. doi: 10.1111/ans.14372. No abstract available.


Navigating manuscript assessment: The new practitioner's guide to primary literature peer review.

Smith DV, Stokes LB, Marx K, Aitken SL.

J Oncol Pharm Pract. 2019 Jan;25(1):94-100. doi: 10.1177/1078155218761222. Epub 2018 Mar 2. Review.


Growth gains from selective breeding in a spruce hybrid zone do not compromise local adaptation to climate.

MacLachlan IR, Yeaman S, Aitken SN.

Evol Appl. 2017 Sep 3;11(2):166-181. doi: 10.1111/eva.12525. eCollection 2018 Feb.


Exploring Approximate Bayesian Computation for inferring recent demographic history with genomic markers in nonmodel species.

Elleouet JS, Aitken SN.

Mol Ecol Resour. 2018 May;18(3):525-540. doi: 10.1111/1755-0998.12758. Epub 2018 Feb 12.


Making new genetic diagnoses with old data: iterative reanalysis and reporting from genome-wide data in 1,133 families with developmental disorders.

Wright CF, McRae JF, Clayton S, Gallone G, Aitken S, FitzGerald TW, Jones P, Prigmore E, Rajan D, Lord J, Sifrim A, Kelsell R, Parker MJ, Barrett JC, Hurles ME, FitzPatrick DR, Firth HV; DDD Study.

Genet Med. 2018 Oct;20(10):1216-1223. doi: 10.1038/gim.2017.246. Epub 2018 Jan 11.


Clinical Outcomes in Patients With Gram-Negative Infections Treated With Optimized Dosing Cefepime Over Various Minimum Inhibitory Concentrations.

Altshuler J, Guervil DJ, Ericsson CD, Wanger A, Aitken SL, Ostrosky-Zeichner L.

J Pharm Pract. 2018 Feb;31(1):34-39. doi: 10.1177/0897190017696950. Epub 2017 Mar 6.


Bioinformatically predicted deleterious mutations reveal complementation in the interior spruce hybrid complex.

Conte GL, Hodgins KA, Yeaman S, Degner JC, Aitken SN, Rieseberg LH, Whitlock MC.

BMC Genomics. 2017 Dec 15;18(1):970. doi: 10.1186/s12864-017-4344-8.


An evaluation of the Herscovici classification for fractures of the medial malleolus.

Aitken SA, Johnston I, Jennings AC, Chua ITH, Buckley RE.

Foot Ankle Surg. 2017 Dec;23(4):317-320. doi: 10.1016/j.fas.2016.10.003. Epub 2016 Nov 4.


Extended Versus Short-Course Corticosteroid Taper Regimens in the Management of Chronic Obstructive Pulmonary Disease Exacerbations in Critically Ill Patients.

Poon T, Paris DG, Aitken SL, Patrawalla P, Bondarsky E, Altshuler J.

J Intensive Care Med. 2017 Jan 1:885066617741470. doi: 10.1177/0885066617741470. [Epub ahead of print]


ICare-ACS (Improving Care Processes for Patients With Suspected Acute Coronary Syndrome): A Study of Cross-System Implementation of a National Clinical Pathway.

Than MP, Pickering JW, Dryden JM, Lord SJ, Aitken SA, Aldous SJ, Allan KE, Ardagh MW, Bonning JWN, Callender R, Chapman LRE, Christiansen JP, Cromhout APJ, Cullen L, Deely JM, Devlin GP, Ferrier KA, Florkowski CM, Frampton CMA, George PM, Hamilton GJ, Jaffe AS, Kerr AJ, Larkin GL, Makower RM, Matthews TJE, Parsonage WA, Peacock WF, Peckler BF, van Pelt NC, Poynton L, Richards AM, Scott AG, Simmonds MB, Smyth D, Thomas OP, To ACY, Du Toit SA, Troughton RW, Yates KM; ICare-ACS Implementation Group.

Circulation. 2018 Jan 23;137(4):354-363. doi: 10.1161/CIRCULATIONAHA.117.031984. Epub 2017 Nov 14.


Should Piperacillin-Tazobactam Be Used as Definitive Therapy against Enterobacteriaceae Harboring Inducible AmpC β-Lactamases?

Aitken SL, Foolad F, McDaneld PM.

Antimicrob Agents Chemother. 2017 Aug 24;61(9). pii: e01160-17. doi: 10.1128/AAC.01160-17. Print 2017 Sep. No abstract available.


Incidence, prognostic factors and impact of postoperative delirium after major vascular surgery: A meta-analysis and systematic review.

Aitken SJ, Blyth FM, Naganathan V.

Vasc Med. 2017 Oct;22(5):387-397. doi: 10.1177/1358863X17721639. Epub 2017 Aug 7. Review.


Determinants of adherence to antiretroviral therapy among HIV-positive adults in sub-Saharan Africa: a systematic review.

Heestermans T, Browne JL, Aitken SC, Vervoort SC, Klipstein-Grobusch K.

BMJ Glob Health. 2016 Dec 30;1(4):e000125. doi: 10.1136/bmjgh-2016-000125. eCollection 2016.


The primary health care of transgender adults.

Aitken S.

Sex Health. 2017 Oct;14(5):477-483. doi: 10.1071/SH17048.


The risk of non-union per fracture: current myths and revised figures from a population of over 4 million adults.

Mills LA, Aitken SA, Simpson AHRW.

Acta Orthop. 2017 Aug;88(4):434-439. doi: 10.1080/17453674.2017.1321351. Epub 2017 May 16.


Real-Life Assessment of the Safety and Effectiveness of the New Tablet and Intravenous Formulations of Posaconazole in the Prophylaxis of Invasive Fungal Infections via Analysis of 343 Courses.

Tverdek FP, Heo ST, Aitken SL, Granwehr B, Kontoyiannis DP.

Antimicrob Agents Chemother. 2017 Jul 25;61(8). pii: e00188-17. doi: 10.1128/AAC.00188-17. Print 2017 Aug.


Whole-Genome Sequencing Accurately Identifies Resistance to Extended-Spectrum β-Lactams for Major Gram-Negative Bacterial Pathogens.

Shelburne SA, Kim J, Munita JM, Sahasrabhojane P, Shields RK, Press EG, Li X, Arias CA, Cantarel B, Jiang Y, Kim MS, Aitken SL, Greenberg DE.

Clin Infect Dis. 2017 Sep 1;65(5):738-745. doi: 10.1093/cid/cix417.


The circadian dynamics of small nucleolar RNA in the mouse liver.

Aitken S, Semple CA.

J R Soc Interface. 2017 May;14(130). pii: 20170034. doi: 10.1098/rsif.2017.0034.


Solithromycin: A novel ketolide antibiotic.

Buege MJ, Brown JE, Aitken SL.

Am J Health Syst Pharm. 2017 Jun 15;74(12):875-887. doi: 10.2146/ajhp160934. Epub 2017 Apr 21. Review.


Routine molecular point-of-care testing for respiratory viruses in adults presenting to hospital with acute respiratory illness (ResPOC): a pragmatic, open-label, randomised controlled trial.

Brendish NJ, Malachira AK, Armstrong L, Houghton R, Aitken S, Nyimbili E, Ewings S, Lillie PJ, Clark TW.

Lancet Respir Med. 2017 May;5(5):401-411. doi: 10.1016/S2213-2600(17)30120-0. Epub 2017 Apr 6.


HIV and risk of cardiovascular disease in sub-Saharan Africa: Rationale and design of the Ndlovu Cohort Study.

Vos A, Tempelman H, Devillé W, Barth R, Wensing A, Kretzschmar M, Klipstein-Grobusch K, Hoepelman A, Tesselaar K, Aitken S, Madzivhandila M, Uiterwaal C, Venter F, Coutinho R, Grobbee DE.

Eur J Prev Cardiol. 2017 Jul;24(10):1043-1050. doi: 10.1177/2047487317702039. Epub 2017 Apr 5.


WT1 expression in breast cancer disrupts the epithelial/mesenchymal balance of tumour cells and correlates with the metabolic response to docetaxel.

Artibani M, Sims AH, Slight J, Aitken S, Thornburn A, Muir M, Brunton VG, Del-Pozo J, Morrison LR, Katz E, Hastie ND, Hohenstein P.

Sci Rep. 2017 Mar 27;7:45255. doi: 10.1038/srep45255.


Multicenter Evaluation of Ceftolozane/Tazobactam for Serious Infections Caused by Carbapenem-Resistant Pseudomonas aeruginosa.

Munita JM, Aitken SL, Miller WR, Perez F, Rosa R, Shimose LA, Lichtenberger PN, Abbo LM, Jain R, Nigo M, Wanger A, Araos R, Tran TT, Adachi J, Rakita R, Shelburne S, Bonomo RA, Arias CA.

Clin Infect Dis. 2017 Jul 1;65(1):158-161. doi: 10.1093/cid/cix014.


Transcription factor Wilms' tumor 1 regulates developmental RNAs through 3' UTR interaction.

Bharathavikru R, Dudnakova T, Aitken S, Slight J, Artibani M, Hohenstein P, Tollervey D, Hastie N.

Genes Dev. 2017 Feb 15;31(4):347-352. doi: 10.1101/gad.291500.116. Epub 2017 Mar 13.


A closer look at novel climates: new methods and insights at continental to landscape scales.

Mahony CR, Cannon AJ, Wang T, Aitken SN.

Glob Chang Biol. 2017 Sep;23(9):3934-3955. doi: 10.1111/gcb.13645. Epub 2017 Feb 28.


Medium-term patient-reported outcomes after total hip replacement for displaced hip fractures.

Middleton SD, McNiven N, Anakwe RE, Jenkins PJ, Aitken SA, Keating JF, Moran M.

Eur J Orthop Surg Traumatol. 2017 Oct;27(7):917-921. doi: 10.1007/s00590-017-1907-y. Epub 2017 Jan 25.


Significant publications on infectious diseases pharmacotherapy in 2015.

Babic JT, Sofjan A, Babin M, Echevarria K, Ikwuagwu JO, Lam WM, Aitken SL, Perez KK.

Am J Health Syst Pharm. 2017 Feb 15;74(4):238-252. doi: 10.2146/ajhp160090. Epub 2017 Jan 12. Review.


How common is subsequent central nervous system toxicity in asymptomatic patients with haematologic malignancy and supratherapeutic voriconazole serum levels?

Heo ST, Aitken SL, Tverdek FP, Kontoyiannis DP.

Clin Microbiol Infect. 2017 Jun;23(6):387-390. doi: 10.1016/j.cmi.2016.12.031. Epub 2017 Jan 7.


The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines.

Nadeau S, Meirmans PG, Aitken SN, Ritland K, Isabel N.

Ecol Evol. 2016 Oct 27;6(24):8649-8664. doi: 10.1002/ece3.2550. eCollection 2016 Dec.


Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding.

Holliday JA, Aitken SN, Cooke JE, Fady B, González-Martínez SC, Heuertz M, Jaramillo-Correa JP, Lexer C, Staton M, Whetten RW, Plomion C.

Mol Ecol. 2017 Feb;26(3):706-717. doi: 10.1111/mec.13963. Epub 2017 Jan 27.


Regional variation in antibiotic prescribing among medicare part D enrollees, 2013.

Arizpe A, Reveles KR, Aitken SL.

BMC Infect Dis. 2016 Dec 9;16(1):744.


Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis.

Ernst C, Pike J, Aitken SJ, Long HK, Eling N, Stojic L, Ward MC, Connor F, Rayner TF, Lukk M, Klose RJ, Kutter C, Odom DT.

Elife. 2016 Nov 18;5. pii: e20235. doi: 10.7554/eLife.20235.


Daptomycin non-susceptible Enterococcus faecium in leukemia patients: Role of prior daptomycin exposure.

DiPippo AJ, Tverdek FP, Tarrand JJ, Munita JM, Tran TT, Arias CA, Shelburne SA, Aitken SL.

J Infect. 2017 Mar;74(3):243-247. doi: 10.1016/j.jinf.2016.11.004. Epub 2016 Nov 11.


High mortality in younger patients with major osteoporotic fractures.

Ray R, Clement ND, Aitken SA, McQueen MM, Court-Brown CM, Ralston SH.

Osteoporos Int. 2017 Mar;28(3):1047-1052. doi: 10.1007/s00198-016-3827-9. Epub 2016 Nov 14.


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