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Items: 22

1.

Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis.

Termolino P, Falque M, Aiese Cigliano R, Cremona G, Paparo R, Ederveen A, Martin OC, Consiglio FM, Conicella C.

Plant J. 2019 Aug 22. doi: 10.1111/tpj.14505. [Epub ahead of print]

PMID:
31436858
2.

Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis.

Vara C, Paytuví-Gallart A, Cuartero Y, Le Dily F, Garcia F, Salvà-Castro J, Gómez-H L, Julià E, Moutinho C, Aiese Cigliano R, Sanseverino W, Fornas O, Pendás AM, Heyn H, Waters PD, Marti-Renom MA, Ruiz-Herrera A.

Cell Rep. 2019 Jul 9;28(2):352-367.e9. doi: 10.1016/j.celrep.2019.06.037.

3.

Mutation of a bHLH transcription factor allowed almond domestication.

Sánchez-Pérez R, Pavan S, Mazzeo R, Moldovan C, Aiese Cigliano R, Del Cueto J, Ricciardi F, Lotti C, Ricciardi L, Dicenta F, López-Marqués RL, Møller BL.

Science. 2019 Jun 14;364(6445):1095-1098. doi: 10.1126/science.aav8197.

PMID:
31197015
4.

Distribution, Characteristics, and Regulatory Potential of Long Noncoding RNAs in Brown-Rot Fungi.

Borgognone A, Sanseverino W, Aiese Cigliano R, Castanera R.

Int J Genomics. 2019 May 2;2019:9702342. doi: 10.1155/2019/9702342. eCollection 2019.

5.

A de novo transcriptome assembly approach elucidates the dynamics of ovarian maturation in the swordfish (Xiphias gladius).

Gioacchini G, Marisaldi L, Basili D, Candelma M, Pignalosa P, Aiese Cigliano R, Sanseverino W, Hardiman G, Carnevali O.

Sci Rep. 2019 May 14;9(1):7375. doi: 10.1038/s41598-019-43872-6.

6.

A Walkthrough to the Use of GreeNC: The Plant lncRNA Database.

Paytuvi-Gallart A, Sanseverino W, Aiese Cigliano R.

Methods Mol Biol. 2019;1933:397-414. doi: 10.1007/978-1-4939-9045-0_25.

PMID:
30945200
7.

Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing.

Russo MT, Aiese Cigliano R, Sanseverino W, Ferrante MI.

PeerJ. 2018 Oct 5;6:e5507. doi: 10.7717/peerj.5507. eCollection 2018.

8.

Author Correction: The hypothesis that Helicobacter pylori predisposes to Alzheimer's disease is biologically plausible.

Contaldi F, Capuano F, Fulgione A, Aiese Cigliano R, Sanseverino W, Iannelli D, Medaglia C, Capparelli R.

Sci Rep. 2018 Apr 11;8(1):6061. doi: 10.1038/s41598-018-23613-x.

9.

Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.

Seddiki K, Godart F, Aiese Cigliano R, Sanseverino W, Barakat M, Ortet P, Rébeillé F, Maréchal E, Cagnac O, Amato A.

Genome Announc. 2018 Mar 15;6(11). pii: e01335-17. doi: 10.1128/genomeA.01335-17.

10.

Draft of Zucchini (Cucurbita pepo L.) Proteome: A Resource for Genetic and Genomic Studies.

Andolfo G, Di Donato A, Darrudi R, Errico A, Aiese Cigliano R, Ercolano MR.

Front Genet. 2017 Nov 21;8:181. doi: 10.3389/fgene.2017.00181. eCollection 2017. No abstract available.

11.

PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.

Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1197-D1201. doi: 10.1093/nar/gkx1119.

12.

Whole-genome re-sequencing of two Italian tomato landraces reveals sequence variations in genes associated with stress tolerance, fruit quality and long shelf-life traits.

Tranchida-Lombardo V, Aiese Cigliano R, Anzar I, Landi S, Palombieri S, Colantuono C, Bostan H, Termolino P, Aversano R, Batelli G, Cammareri M, Carputo D, Chiusano ML, Conicella C, Consiglio F, D'Agostino N, De Palma M, Di Matteo A, Grandillo S, Sanseverino W, Tucci M, Grillo S.

DNA Res. 2018 Apr 1;25(2):149-160. doi: 10.1093/dnares/dsx045.

13.

Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.

Forestan C, Farinati S, Aiese Cigliano R, Lunardon A, Sanseverino W, Varotto S.

BMC Plant Biol. 2017 Oct 12;17(1):161. doi: 10.1186/s12870-017-1108-1.

14.

The hypothesis that Helicobacter pylori predisposes to Alzheimer's disease is biologically plausible.

Contaldi F, Capuano F, Fulgione A, Aiese Cigliano R, Sanseverino W, Iannelli D, Medaglia C, Capparelli R.

Sci Rep. 2017 Aug 10;7(1):7817. doi: 10.1038/s41598-017-07532-x. Erratum in: Sci Rep. 2018 Apr 11;8(1):6061.

15.

Careful with That Axe, Gene, Genome Perturbation after a PEG-Mediated Protoplast Transformation in Fusarium verticillioides.

Scala V, Grottoli A, Aiese Cigliano R, Anzar I, Beccaccioli M, Fanelli C, Dall'Asta C, Battilani P, Reverberi M, Sanseverino W.

Toxins (Basel). 2017 May 31;9(6). pii: E183. doi: 10.3390/toxins9060183.

16.

Transcriptomic response of durum wheat to nitrogen starvation.

Curci PL, Aiese Cigliano R, Zuluaga DL, Janni M, Sanseverino W, Sonnante G.

Sci Rep. 2017 Apr 26;7(1):1176. doi: 10.1038/s41598-017-01377-0.

17.

Spermatozoa from infertile patients exhibit differences of DNA methylation associated with spermatogenesis-related processes: an array-based analysis.

Camprubí C, Salas-Huetos A, Aiese-Cigliano R, Godo A, Pons MC, Castellano G, Grossmann M, Sanseverino W, Martin-Subero JI, Garrido N, Blanco J.

Reprod Biomed Online. 2016 Dec;33(6):709-719. doi: 10.1016/j.rbmo.2016.09.001. Epub 2016 Sep 15.

PMID:
27692602
18.

Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis.

Forestan C, Aiese Cigliano R, Farinati S, Lunardon A, Sanseverino W, Varotto S.

Sci Rep. 2016 Jul 27;6:30446. doi: 10.1038/srep30446.

19.

Effects of Mecp2 loss of function in embryonic cortical neurons: a bioinformatics strategy to sort out non-neuronal cells variability from transcriptome profiling.

Vacca M, Tripathi KP, Speranza L, Aiese Cigliano R, Scalabrì F, Marracino F, Madonna M, Sanseverino W, Perrone-Capano C, Guarracino MR, D'Esposito M.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:14. doi: 10.1186/s12859-015-0859-7.

20.

GREENC: a Wiki-based database of plant lncRNAs.

Paytuví Gallart A, Hermoso Pulido A, Anzar Martínez de Lagrán I, Sanseverino W, Aiese Cigliano R.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1161-6. doi: 10.1093/nar/gkv1215. Epub 2015 Nov 17.

21.

Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles.

Aiese Cigliano R, Sanseverino W, Cremona G, Ercolano MR, Conicella C, Consiglio FM.

BMC Genomics. 2013 Jan 28;14:57. doi: 10.1186/1471-2164-14-57.

22.

Histone hyperacetylation affects meiotic recombination and chromosome segregation in Arabidopsis.

Perrella G, Consiglio MF, Aiese-Cigliano R, Cremona G, Sanchez-Moran E, Barra L, Errico A, Bressan RA, Franklin FC, Conicella C.

Plant J. 2010 Jun 1;62(5):796-806. doi: 10.1111/j.1365-313X.2010.04191.x. Epub 2010 Mar 2.

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