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Items: 1 to 50 of 83

1.

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans.

Beurton F, Stempor P, Caron M, Appert A, Dong Y, Chen RA, Cluet D, Couté Y, Herbette M, Huang N, Polveche H, Spichty M, Bedet C, Ahringer J, Palladino F.

Nucleic Acids Res. 2019 Oct 11. pii: gkz880. doi: 10.1093/nar/gkz880. [Epub ahead of print]

PMID:
31602465
2.

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis.

Beltran T, Barroso C, Birkle TY, Stevens L, Schwartz HT, Sternberg PW, Fradin H, Gunsalus K, Piano F, Sharma G, Cerrato C, Ahringer J, Martínez-Pérez E, Blaxter M, Sarkies P.

Dev Cell. 2019 Mar 25;48(6):793-810.e6. doi: 10.1016/j.devcel.2018.12.026. Epub 2019 Jan 31.

3.

The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans.

Weng C, Kosalka J, Berkyurek AC, Stempor P, Feng X, Mao H, Zeng C, Li WJ, Yan YH, Dong MQ, Morero NR, Zuliani C, Barabas O, Ahringer J, Guang S, Miska EA.

Genes Dev. 2019 Jan 1;33(1-2):90-102. doi: 10.1101/gad.319293.118. Epub 2018 Dec 19.

4.

Chromatin accessibility dynamics across C. elegans development and ageing.

Jänes J, Dong Y, Schoof M, Serizay J, Appert A, Cerrato C, Woodbury C, Chen R, Gemma C, Huang N, Kissiov D, Stempor P, Steward A, Zeiser E, Sauer S, Ahringer J.

Elife. 2018 Oct 26;7. pii: e37344. doi: 10.7554/eLife.37344.

5.

Morphogenetic degeneracies in the actomyosin cortex.

Naganathan SR, Fürthauer S, Rodriguez J, Fievet BT, Jülicher F, Ahringer J, Cannistraci CV, Grill SW.

Elife. 2018 Oct 22;7. pii: e37677. doi: 10.7554/eLife.37677.

6.

Genome organization at different scales: nature, formation and function.

Serizay J, Ahringer J.

Curr Opin Cell Biol. 2018 Jun;52:145-153. doi: 10.1016/j.ceb.2018.03.009. Epub 2018 Apr 6. Review.

PMID:
29631108
7.

Repressive Chromatin in Caenorhabditis elegans: Establishment, Composition, and Function.

Ahringer J, Gasser SM.

Genetics. 2018 Feb;208(2):491-511. doi: 10.1534/genetics.117.300386. Review.

8.

Broad Chromatin Domains: An Important Facet of Genome Regulation.

Carelli FN, Sharma G, Ahringer J.

Bioessays. 2017 Dec;39(12). doi: 10.1002/bies.201700124. Epub 2017 Oct 23. Review.

PMID:
29058338
9.

Correction: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.

McMurchy AN, Stempor P, Gaarenstroom T, Wysolmerski B, Dong Y, Aussianikava D, Appert A, Huang N, Kolasinska-Zwierz P, Sapetschnig A, Miska EA, Ahringer J.

Elife. 2017 Oct 5;6. pii: e32516. doi: 10.7554/eLife.32516. No abstract available.

10.

An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans.

Tanguy M, Véron L, Stempor P, Ahringer J, Sarkies P, Miska EA.

MBio. 2017 Sep 5;8(5). pii: e00924-17. doi: 10.1128/mBio.00924-17.

11.

aPKC Cycles between Functionally Distinct PAR Protein Assemblies to Drive Cell Polarity.

Rodriguez J, Peglion F, Martin J, Hubatsch L, Reich J, Hirani N, Gubieda AG, Roffey J, Fernandes AR, St Johnston D, Ahringer J, Goehring NW.

Dev Cell. 2017 Aug 21;42(4):400-415.e9. doi: 10.1016/j.devcel.2017.07.007. Epub 2017 Aug 3.

12.

A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.

McMurchy AN, Stempor P, Gaarenstroom T, Wysolmerski B, Dong Y, Aussianikava D, Appert A, Huang N, Kolasinska-Zwierz P, Sapetschnig A, Miska EA, Ahringer J.

Elife. 2017 Mar 15;6. pii: e21666. doi: 10.7554/eLife.21666. Erratum in: Elife. 2017 Oct 05;6:.

13.

SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics.

Stempor P, Ahringer J.

Wellcome Open Res. 2016 Nov 15;1:14. doi: 10.12688/wellcomeopenres.10004.1. eCollection 2016.

14.

Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system.

Heppert JK, Dickinson DJ, Pani AM, Higgins CD, Steward A, Ahringer J, Kuhn JR, Goldstein B.

Mol Biol Cell. 2016 Nov 7;27(22):3385-3394. Epub 2016 Jul 6.

15.

Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes.

Evans KJ, Huang N, Stempor P, Chesney MA, Down TA, Ahringer J.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7020-E7029. doi: 10.1073/pnas.1608162113. Epub 2016 Oct 25.

16.

The DREAM complex promotes gene body H2A.Z for target repression.

Latorre I, Chesney MA, Garrigues JM, Stempor P, Appert A, Francesconi M, Strome S, Ahringer J.

Genes Dev. 2015 Mar 1;29(5):495-500. doi: 10.1101/gad.255810.114.

17.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

18.

PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans.

Weick EM, Sarkies P, Silva N, Chen RA, Moss SM, Cording AC, Ahringer J, Martinez-Perez E, Miska EA.

Genes Dev. 2014 Apr 1;28(7):783-96. doi: 10.1101/gad.238105.114.

19.

Extreme HOT regions are CpG-dense promoters in C. elegans and humans.

Chen RA, Stempor P, Down TA, Zeiser E, Feuer SK, Ahringer J.

Genome Res. 2014 Jul;24(7):1138-46. doi: 10.1101/gr.161992.113. Epub 2014 Mar 20.

20.

CDK phosphorylation of SLD-2 is required for replication initiation and germline development in C. elegans.

Gaggioli V, Zeiser E, Rivers D, Bradshaw CR, Ahringer J, Zegerman P.

J Cell Biol. 2014 Feb 17;204(4):507-22. doi: 10.1083/jcb.201310083. Erratum in: J Cell Biol. 2014 Mar 17;204(6):1075.

21.

Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint.

Stamper EL, Rodenbusch SE, Rosu S, Ahringer J, Villeneuve AM, Dernburg AF.

PLoS Genet. 2013;9(8):e1003679. doi: 10.1371/journal.pgen.1003679. Epub 2013 Aug 8.

22.

Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses.

Woods S, Coghlan A, Rivers D, Warnecke T, Jeffries SJ, Kwon T, Rogers A, Hurst LD, Ahringer J.

PLoS Genet. 2013 May;9(5):e1003330. doi: 10.1371/journal.pgen.1003330. Epub 2013 May 9.

23.

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures.

Chen RA, Down TA, Stempor P, Chen QB, Egelhofer TA, Hillier LW, Jeffers TE, Ahringer J.

Genome Res. 2013 Aug;23(8):1339-47. doi: 10.1101/gr.153668.112. Epub 2013 Apr 2.

24.

Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy.

Fievet BT, Rodriguez J, Naganathan S, Lee C, Zeiser E, Ishidate T, Shirayama M, Grill S, Ahringer J.

Nat Cell Biol. 2013 Jan;15(1):103-12. doi: 10.1038/ncb2639. Epub 2012 Dec 16.

25.

H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation.

Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, Ahringer J.

PLoS Genet. 2012 Sep;8(9):e1002933. doi: 10.1371/journal.pgen.1002933. Epub 2012 Sep 13.

26.

Systematic bias in high-throughput sequencing data and its correction by BEADS.

Cheung MS, Down TA, Latorre I, Ahringer J.

Nucleic Acids Res. 2011 Aug;39(15):e103. doi: 10.1093/nar/gkr425. Epub 2011 Jun 6.

27.

MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline.

Zeiser E, Frøkjær-Jensen C, Jorgensen E, Ahringer J.

PLoS One. 2011;6(5):e20082. doi: 10.1371/journal.pone.0020082. Epub 2011 May 26.

28.

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X; modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.

Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. Epub 2010 Dec 22. Erratum in: Science. 2011 Jan 7;331(6013):30.

29.

Broad chromosomal domains of histone modification patterns in C. elegans.

Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg AF, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS.

Genome Res. 2011 Feb;21(2):227-36. doi: 10.1101/gr.115519.110. Epub 2010 Dec 22.

30.

An assessment of histone-modification antibody quality.

Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, Luu Y, Ngo Q, Perry M, Rechtsteiner A, Riddle NC, Schwartz YB, Shanower GA, Vielle A, Ahringer J, Elgin SC, Kuroda MI, Pirrotta V, Ren B, Strome S, Park PJ, Karpen GH, Hawkins RD, Lieb JD.

Nat Struct Mol Biol. 2011 Jan;18(1):91-3. doi: 10.1038/nsmb.1972. Epub 2010 Dec 5.

31.
32.

Cell polarity in eggs and epithelia: parallels and diversity.

St Johnston D, Ahringer J.

Cell. 2010 May 28;141(5):757-74. doi: 10.1016/j.cell.2010.05.011. Review.

33.

Differential chromatin marking of introns and expressed exons by H3K36me3.

Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J.

Nat Genet. 2009 Mar;41(3):376-81. doi: 10.1038/ng.322. Epub 2009 Feb 1.

34.

A casein kinase 1 and PAR proteins regulate asymmetry of a PIP(2) synthesis enzyme for asymmetric spindle positioning.

Panbianco C, Weinkove D, Zanin E, Jones D, Divecha N, Gotta M, Ahringer J.

Dev Cell. 2008 Aug;15(2):198-208. doi: 10.1016/j.devcel.2008.06.002.

35.

The art and design of genetic screens: RNA interference.

Boutros M, Ahringer J.

Nat Rev Genet. 2008 Jul;9(7):554-66. doi: 10.1038/nrg2364. Epub 2008 Jun 3. Review.

PMID:
18521077
36.

PAR proteins direct asymmetry of the cell cycle regulators Polo-like kinase and Cdc25.

Rivers DM, Moreno S, Abraham M, Ahringer J.

J Cell Biol. 2008 Mar 10;180(5):877-85. doi: 10.1083/jcb.200710018. Epub 2008 Mar 3.

37.

Microtubules are involved in anterior-posterior axis formation in C. elegans embryos.

Tsai MC, Ahringer J.

J Cell Biol. 2007 Nov 5;179(3):397-402. Epub 2007 Oct 29.

38.

Asymmetry of early endosome distribution in C. elegans embryos.

Andrews R, Ahringer J.

PLoS One. 2007 Jun 6;2(6):e493.

39.

Similar requirements for CDC-42 and the PAR-3/PAR-6/PKC-3 complex in diverse cell types.

Welchman DP, Mathies LD, Ahringer J.

Dev Biol. 2007 May 1;305(1):347-57. Epub 2007 Feb 21.

40.
41.

RNA interference has second helpings.

Miska EA, Ahringer J.

Nat Biotechnol. 2007 Mar;25(3):302-3. No abstract available.

PMID:
17344882
42.

Playing ping pong with pins: cortical and microtubule-induced polarity.

Ahringer J.

Cell. 2005 Dec 29;123(7):1184-6. Erratum in: Cell. 2006 Mar 10;124(5):1083.

43.

Chromatin regulation and sumoylation in the inhibition of Ras-induced vulval development in Caenorhabditis elegans.

Poulin G, Dong Y, Fraser AG, Hopper NA, Ahringer J.

EMBO J. 2005 Jul 20;24(14):2613-23. Epub 2005 Jun 30. Erratum in: EMBO J. 2006 Jan 25;25(2):444-5.

44.

Living on the edge.

Poulin G, Ahringer J.

Genome Biol. 2005;6(2):307. Epub 2005 Jan 14.

45.

Genome-wide RNAi screens in Caenorhabditis elegans: impact on cancer research.

Poulin G, Nandakumar R, Ahringer J.

Oncogene. 2004 Nov 1;23(51):8340-5. Review.

PMID:
15517014
46.

Genome-wide RNAi identifies p53-dependent and -independent regulators of germ cell apoptosis in C. elegans.

Lettre G, Kritikou EA, Jaeggi M, Calixto A, Fraser AG, Kamath RS, Ahringer J, Hengartner MO.

Cell Death Differ. 2004 Nov;11(11):1198-203.

47.

A regulatory network of T-box genes and the even-skipped homologue vab-7 controls patterning and morphogenesis in C. elegans.

Pocock R, Ahringer J, Mitsch M, Maxwell S, Woollard A.

Development. 2004 May;131(10):2373-85. Epub 2004 Apr 21.

48.

Centrosome maturation and duplication in C. elegans require the coiled-coil protein SPD-2.

Kemp CA, Kopish KR, Zipperlen P, Ahringer J, O'Connell KF.

Dev Cell. 2004 Apr;6(4):511-23.

49.

The C. elegans hook protein, ZYG-12, mediates the essential attachment between the centrosome and nucleus.

Malone CJ, Misner L, Le Bot N, Tsai MC, Campbell JM, Ahringer J, White JG.

Cell. 2003 Dec 26;115(7):825-36.

50.

Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions.

Simmer F, Moorman C, van der Linden AM, Kuijk E, van den Berghe PV, Kamath RS, Fraser AG, Ahringer J, Plasterk RH.

PLoS Biol. 2003 Oct;1(1):E12. Epub 2003 Oct 13.

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