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Items: 42

1.

Zebrafish Neuroscience: Using Artificial Neural Networks to Help Understand Brains.

Ahrens MB.

Curr Biol. 2019 Nov 4;29(21):R1138-R1140. doi: 10.1016/j.cub.2019.09.039.

PMID:
31689401
2.

A bidirectional network for appetite control in larval zebrafish.

Wee CL, Song EY, Johnson RE, Ailani D, Randlett O, Kim JY, Nikitchenko M, Bahl A, Yang CT, Ahrens MB, Kawakami K, Engert F, Kunes S.

Elife. 2019 Oct 18;8. pii: e43775. doi: 10.7554/eLife.43775.

3.

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, Paninski L, Macklin JJ, Murphy GJ, Podgorski K, Lin BJ, Chen TW, Turner GC, Liu Z, Koyama M, Svoboda K, Ahrens MB, Lavis LD, Schreiter ER.

Science. 2019 Aug 16;365(6454):699-704. doi: 10.1126/science.aav6416. Epub 2019 Aug 1.

PMID:
31371562
4.

A genetically encoded fluorescent sensor for in vivo imaging of GABA.

Marvin JS, Shimoda Y, Magloire V, Leite M, Kawashima T, Jensen TP, Kolb I, Knott EL, Novak O, Podgorski K, Leidenheimer NJ, Rusakov DA, Ahrens MB, Kullmann DM, Looger LL.

Nat Methods. 2019 Aug;16(8):763-770. doi: 10.1038/s41592-019-0471-2. Epub 2019 Jul 15.

PMID:
31308547
5.

Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior.

Mu Y, Bennett DV, Rubinov M, Narayan S, Yang CT, Tanimoto M, Mensh BD, Looger LL, Ahrens MB.

Cell. 2019 Jun 27;178(1):27-43.e19. doi: 10.1016/j.cell.2019.05.050. Epub 2019 Jun 20.

6.

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.

Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang CT, Wittenbach JD, Freeman J, Preibisch S, Koyama M, Keller PJ, Ahrens MB.

Nat Methods. 2018 Dec;15(12):1117-1125. doi: 10.1038/s41592-018-0221-x. Epub 2018 Nov 30.

PMID:
30504888
7.

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish.

Chen X, Mu Y, Hu Y, Kuan AT, Nikitchenko M, Randlett O, Chen AB, Gavornik JP, Sompolinsky H, Engert F, Ahrens MB.

Neuron. 2018 Nov 21;100(4):876-890.e5. doi: 10.1016/j.neuron.2018.09.042. Epub 2018 Oct 25.

8.

Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Sep;14(9):901. doi: 10.1038/s41589-018-0023-6.

PMID:
29520042
9.

Integrative whole-brain neuroscience in larval zebrafish.

Vanwalleghem GC, Ahrens MB, Scott EK.

Curr Opin Neurobiol. 2018 Jun;50:136-145. doi: 10.1016/j.conb.2018.02.004. Epub 2018 Mar 20. Review.

PMID:
29486425
10.

A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Apr;14(4):352-360. doi: 10.1038/s41589-018-0004-9. Epub 2018 Feb 26. Erratum in: Nat Chem Biol. 2018 Mar 8;:.

11.

Multi-scale approaches for high-speed imaging and analysis of large neural populations.

Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L.

PLoS Comput Biol. 2017 Aug 3;13(8):e1005685. doi: 10.1371/journal.pcbi.1005685. eCollection 2017 Aug.

12.

The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning.

Kawashima T, Zwart MF, Yang CT, Mensh BD, Ahrens MB.

Cell. 2016 Nov 3;167(4):933-946.e20. doi: 10.1016/j.cell.2016.09.055. Epub 2016 Oct 27.

13.

A Practical Guide to Light Sheet Microscopy.

Bennett DV, Ahrens MB.

Methods Mol Biol. 2016;1451:321-31. doi: 10.1007/978-1-4939-3771-4_22.

PMID:
27464818
14.

Input-Specific Gain Modulation by Local Sensory Context Shapes Cortical and Thalamic Responses to Complex Sounds.

Williamson RS, Ahrens MB, Linden JF, Sahani M.

Neuron. 2016 Jul 20;91(2):467-81. doi: 10.1016/j.neuron.2016.05.041. Epub 2016 Jun 23.

15.

Sensitive red protein calcium indicators for imaging neural activity.

Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, Jayaraman V, Looger LL, Svoboda K, Kim DS.

Elife. 2016 Mar 24;5. pii: e12727. doi: 10.7554/eLife.12727.

16.

Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion.

Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang CT, Schier AF, Freeman J, Engert F, Ahrens MB.

Elife. 2016 Mar 22;5:e12741. doi: 10.7554/eLife.12741.

17.

Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy.

Quirin S, Vladimirov N, Yang CT, Peterka DS, Yuste R, Ahrens MB.

Opt Lett. 2016 Mar 1;41(5):855-8. doi: 10.1364/OL.41.000855.

18.

Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish.

Dunn TW, Gebhardt C, Naumann EA, Riegler C, Ahrens MB, Engert F, Del Bene F.

Neuron. 2016 Feb 3;89(3):613-28. doi: 10.1016/j.neuron.2015.12.021. Epub 2016 Jan 21.

19.

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.

Fosque BF, Sun Y, Dana H, Yang CT, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB, Jayaraman V, Looger LL, Schreiter ER.

Science. 2015 Feb 13;347(6223):755-60. doi: 10.1126/science.1260922.

20.

Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy.

Keller PJ, Ahrens MB.

Neuron. 2015 Feb 4;85(3):462-83. doi: 10.1016/j.neuron.2014.12.039. Review.

21.

Large-scale imaging in small brains.

Ahrens MB, Engert F.

Curr Opin Neurobiol. 2015 Jun;32:78-86. doi: 10.1016/j.conb.2015.01.007. Epub 2015 Jan 28. Review.

22.

Light-sheet imaging for systems neuroscience.

Keller PJ, Ahrens MB, Freeman J.

Nat Methods. 2015 Jan;12(1):27-9. doi: 10.1038/nmeth.3214. No abstract available.

PMID:
25549267
23.

Mapping brain activity at scale with cluster computing.

Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB.

Nat Methods. 2014 Sep;11(9):941-50. doi: 10.1038/nmeth.3041. Epub 2014 Jul 27.

PMID:
25068736
24.

Light-sheet functional imaging in fictively behaving zebrafish.

Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang CT, Looger LL, Keller PJ, Freeman J, Ahrens MB.

Nat Methods. 2014 Sep;11(9):883-4. doi: 10.1038/nmeth.3040. Epub 2014 Jul 27. No abstract available.

PMID:
25068735
25.

Spinal projection neurons control turning behaviors in zebrafish.

Huang KH, Ahrens MB, Dunn TW, Engert F.

Curr Biol. 2013 Aug 19;23(16):1566-73. doi: 10.1016/j.cub.2013.06.044. Epub 2013 Aug 1.

26.

Two-photon calcium imaging during fictive navigation in virtual environments.

Ahrens MB, Huang KH, Narayan S, Mensh BD, Engert F.

Front Neural Circuits. 2013 Jun 6;7:104. doi: 10.3389/fncir.2013.00104. eCollection 2013.

27.

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.

Ahrens MB, Orger MB, Robson DN, Li JM, Keller PJ.

Nat Methods. 2013 May;10(5):413-20. doi: 10.1038/nmeth.2434. Epub 2013 Mar 18.

PMID:
23524393
28.

Identification of nonvisual photomotor response cells in the vertebrate hindbrain.

Kokel D, Dunn TW, Ahrens MB, Alshut R, Cheung CY, Saint-Amant L, Bruni G, Mateus R, van Ham TJ, Shiraki T, Fukada Y, Kojima D, Yeh JR, Mikut R, von Lintig J, Engert F, Peterson RT.

J Neurosci. 2013 Feb 27;33(9):3834-43. doi: 10.1523/JNEUROSCI.3689-12.2013.

29.

Optogenetics in a transparent animal: circuit function in the larval zebrafish.

Portugues R, Severi KE, Wyart C, Ahrens MB.

Curr Opin Neurobiol. 2013 Feb;23(1):119-26. doi: 10.1016/j.conb.2012.11.001. Epub 2012 Dec 12. Review.

PMID:
23246238
30.

Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R.

Nature. 2012 May 9;485(7399):471-7. doi: 10.1038/nature11057.

31.

Observers exploit stochastic models of sensory change to help judge the passage of time.

Ahrens MB, Sahani M.

Curr Biol. 2011 Feb 8;21(3):200-6. doi: 10.1016/j.cub.2010.12.043. Epub 2011 Jan 20.

32.

Inferring input nonlinearities in neural encoding models.

Ahrens MB, Paninski L, Sahani M.

Network. 2008;19(1):35-67. doi: 10.1080/09548980701813936.

PMID:
18300178
33.

Nonlinearities and contextual influences in auditory cortical responses modeled with multilinear spectrotemporal methods.

Ahrens MB, Linden JF, Sahani M.

J Neurosci. 2008 Feb 20;28(8):1929-42. doi: 10.1523/JNEUROSCI.3377-07.2008.

34.

Efficient estimation of detailed single-neuron models.

Huys QJ, Ahrens MB, Paninski L.

J Neurophysiol. 2006 Aug;96(2):872-90. Epub 2006 Apr 19.

35.

Effect of viewing smoking in movies on adolescent smoking initiation: a cohort study.

Dalton MA, Sargent JD, Beach ML, Titus-Ernstoff L, Gibson JJ, Ahrens MB, Tickle JJ, Heatherton TF.

Lancet. 2003 Jul 26;362(9380):281-5.

PMID:
12892958
36.

Adolescent exposure to extremely violent movies.

Sargent JD, Heatherton TF, Ahrens MB, Dalton MA, Tickle JJ, Beach ML.

J Adolesc Health. 2002 Dec;31(6):449-54.

PMID:
12457577
37.

The incidence and context of tobacco use in popular movies from 1988 to 1997.

Dalton MA, Tickle JJ, Sargent JD, Beach ML, Ahrens MB, Heatherton TF.

Prev Med. 2002 May;34(5):516-23.

PMID:
11969352
38.

Viewing tobacco use in movies: does it shape attitudes that mediate adolescent smoking?

Sargent JD, Dalton MA, Beach ML, Mott LA, Tickle JJ, Ahrens MB, Heatherton TF.

Am J Prev Med. 2002 Apr;22(3):137-45.

PMID:
11897456
39.

Relation between parental restrictions on movies and adolescent use of tobacco and alcohol.

Dalton MA, Ahrens MB, Sargent JD, Mott LA, Beach ML, Tickle JJ, Heatherton TF.

Eff Clin Pract. 2002 Jan-Feb;5(1):1-10.

PMID:
11874190
40.

Effect of seeing tobacco use in films on trying smoking among adolescents: cross sectional study.

Sargent JD, Beach ML, Dalton MA, Mott LA, Tickle JJ, Ahrens MB, Heatherton TF.

BMJ. 2001 Dec 15;323(7326):1394-7.

41.

Children and guns in a well child cohort.

Stevens MM, Gaffney CA, Tosteson TD, Mott LA, Olson A, Ahrens MB, Konings EK.

Prev Med. 2001 Mar;32(3):201-6.

PMID:
11277675
42.

Brand appearances in contemporary cinema films and contribution to global marketing of cigarettes.

Sargent JD, Tickle JJ, Beach ML, Dalton MA, Ahrens MB, Heatherton TF.

Lancet. 2001 Jan 6;357(9249):29-32.

PMID:
11197357

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