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SUBERMAN Regulates Developmental Suberization of the Arabidopsis Root Endodermis.

Cohen H, Fedyuk V, Wang C, Wu S, Aharoni A.

Plant J. 2020 Feb 6. doi: 10.1111/tpj.14711. [Epub ahead of print]


Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling.

Korenblum E, Dong Y, Szymanski J, Panda S, Jozwiak A, Massalha H, Meir S, Rogachev I, Aharoni A.

Proc Natl Acad Sci U S A. 2020 Feb 18;117(7):3874-3883. doi: 10.1073/pnas.1912130117. Epub 2020 Feb 3.


Metabolomics should be deployed in identification and characterization of gene-edited crops.

Fraser PD, Aharoni A, Hall RD, Huang S, Giovannoni JJ, Sonnewald U, Fernie AR.

Plant J. 2020 Jan 10. doi: 10.1111/tpj.14679. [Epub ahead of print]


Pathways to defense metabolites and evading fruit bitterness in genus Solanum evolved through 2-oxoglutarate-dependent dioxygenases.

Cárdenas PD, Sonawane PD, Heinig U, Jozwiak A, Panda S, Abebie B, Kazachkova Y, Pliner M, Unger T, Wolf D, Ofner I, Vilaprinyo E, Meir S, Davydov O, Gal-On A, Burdman S, Giri A, Zamir D, Scherf T, Szymanski J, Rogachev I, Aharoni A.

Nat Commun. 2019 Nov 14;10(1):5169. doi: 10.1038/s41467-019-13211-4.


Pan-Genomic Illumination of Tomato Identifies Novel Gene-Trait Interactions.

Fernie AR, Aharoni A.

Trends Plant Sci. 2019 Oct;24(10):882-884. doi: 10.1016/j.tplants.2019.08.001. Epub 2019 Aug 29.


A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution.

Barchi L, Pietrella M, Venturini L, Minio A, Toppino L, Acquadro A, Andolfo G, Aprea G, Avanzato C, Bassolino L, Comino C, Molin AD, Ferrarini A, Maor LC, Portis E, Reyes-Chin-Wo S, Rinaldi R, Sala T, Scaglione D, Sonawane P, Tononi P, Almekias-Siegl E, Zago E, Ercolano MR, Aharoni A, Delledonne M, Giuliano G, Lanteri S, Rotino GL.

Sci Rep. 2019 Aug 13;9(1):11769. doi: 10.1038/s41598-019-47985-w.


Advances and future directions in betalain metabolic engineering.

Polturak G, Aharoni A.

New Phytol. 2019 Dec;224(4):1472-1478. doi: 10.1111/nph.15973. Epub 2019 Jul 11. Review.


The Transcription Factor Deaf1 Modulates Engrailed-1 Expression to Regulate Skin Appendage Fate.

Aldea D, Kokalari B, Luckhart C, Aharoni A, Albert PR, Kamberov YG.

J Invest Dermatol. 2019 Nov;139(11):2378-2381.e4. doi: 10.1016/j.jid.2019.05.007. Epub 2019 May 28. No abstract available.


Phytobiome metabolism: beneficial soil microbes steer crop plants' secondary metabolism.

Korenblum E, Aharoni A.

Pest Manag Sci. 2019 Sep;75(9):2378-2384. doi: 10.1002/ps.5440. Epub 2019 May 13. Review.


Chance and pleiotropy dominate genetic diversity in complex bacterial environments.

Noda-García L, Davidi D, Korenblum E, Elazar A, Putintseva E, Aharoni A, Tawfik DS.

Nat Microbiol. 2019 Jul;4(7):1221-1230. doi: 10.1038/s41564-019-0412-y. Epub 2019 Apr 1.


Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod.

Rosado-Souza L, Proost S, Moulin M, Bergmann S, Bocobza SE, Aharoni A, Fitzpatrick TB, Mutwil M, Fernie AR, Obata T.

Plant Physiol. 2019 May;180(1):185-197. doi: 10.1104/pp.18.01346. Epub 2019 Mar 5.


Indole Derivatives Maintain the Status Quo Between Beneficial Biofilms and Their Plant Hosts.

Ganin H, Kemper N, Meir S, Rogachev I, Ely S, Massalha H, Mandaby A, Shanzer A, Keren-Paz A, Meijler MM, Malitsky S, Aharoni A, Kolodkin-Gal I.

Mol Plant Microbe Interact. 2019 Aug;32(8):1013-1025. doi: 10.1094/MPMI-12-18-0327-R. Epub 2019 Jul 2.


A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning.

Battat M, Eitan A, Rogachev I, Hanhineva K, Fernie A, Tohge T, Beekwilder J, Aharoni A.

Plant Physiol. 2019 May;180(1):87-108. doi: 10.1104/pp.19.00009. Epub 2019 Feb 12.


Tissue-specific organic acid metabolism in reproductive and non-reproductive parts of the fig fruit is partially induced by pollination.

Lama K, Peer R, Shlizerman L, Meir S, Doron-Faigenboim A, Sadka A, Aharoni A, Flaishman MA.

Physiol Plant. 2020 Jan;168(1):133-147. doi: 10.1111/ppl.12941. Epub 2019 Mar 27.


Miso: an R package for multiple isotope labeling assisted metabolomics data analysis.

Dong Y, Feldberg L, Aharoni A.

Bioinformatics. 2019 Sep 15;35(18):3524-3526. doi: 10.1093/bioinformatics/btz092.


In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids.

Schleyer G, Shahaf N, Ziv C, Dong Y, Meoded RA, Helfrich EJN, Schatz D, Rosenwasser S, Rogachev I, Aharoni A, Piel J, Vardi A.

Nat Microbiol. 2019 Mar;4(3):527-538. doi: 10.1038/s41564-018-0336-y. Epub 2019 Feb 4.


A Multilevel Study of Melon Fruit Reticulation Provides Insight into Skin Ligno-Suberization Hallmarks.

Cohen H, Dong Y, Szymanski J, Lashbrooke J, Meir S, Almekias-Siegl E, Zeisler-Diehl VV, Schreiber L, Aharoni A.

Plant Physiol. 2019 Apr;179(4):1486-1501. doi: 10.1104/pp.18.01158. Epub 2019 Jan 30.


Arabidopsis HSP70-16 is required for flower opening under normal or mild heat stress temperatures.

Chen X, Shi L, Chen Y, Zhu L, Zhang D, Xiao S, Aharoni A, Shi J, Xu J.

Plant Cell Environ. 2019 Apr;42(4):1190-1204. doi: 10.1111/pce.13480. Epub 2018 Dec 10.


Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.

Barak-Gavish N, Frada MJ, Ku C, Lee PA, DiTullio GR, Malitsky S, Aharoni A, Green SJ, Rotkopf R, Kartvelishvily E, Sheyn U, Schatz D, Vardi A.

Sci Adv. 2018 Oct 24;4(10):eaau5716. doi: 10.1126/sciadv.aau5716. eCollection 2018 Oct.


Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures.

Dahan D, Tsirkas I, Dovrat D, Sparks MA, Singh SP, Galletto R, Aharoni A.

Nucleic Acids Res. 2018 Dec 14;46(22):11847-11857. doi: 10.1093/nar/gky1065.


DLEMMA-MS-Imaging for Identification of Spatially Localized Metabolites and Metabolic Network Map Reconstruction.

Feldberg L, Dong Y, Heinig U, Rogachev I, Aharoni A.

Anal Chem. 2018 Sep 4;90(17):10231-10238. doi: 10.1021/acs.analchem.8b01644. Epub 2018 Aug 16.


Insights into Tissue-specific Specialized Metabolism in Tieguanyin Tea Cultivar by Untargeted Metabolomics.

Chen S, Lin J, Liu H, Gong Z, Wang X, Li M, Aharoni A, Yang Z, Yu X.

Molecules. 2018 Jul 21;23(7). pii: E1817. doi: 10.3390/molecules23071817.


A bi-specific inhibitor targeting IL-17A and MMP-9 reduces invasion and motility in MDA-MB-231 cells.

Koslawsky D, Zaretsky M, Alcalay R, Mazor O, Aharoni A, Papo N.

Oncotarget. 2018 Jun 19;9(47):28500-28513. doi: 10.18632/oncotarget.25526. eCollection 2018 Jun 19.


The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes.

Tzfadia O, Bocobza S, Defoort J, Almekias-Siegl E, Panda S, Levy M, Storme V, Rombauts S, Jaitin DA, Keren-Shaul H, Van de Peer Y, Aharoni A.

Plant J. 2018 Oct;96(1):223-232. doi: 10.1111/tpj.14015. Epub 2018 Jul 29.


A Live-Cell Imaging Approach for Measuring DNA Replication Rates.

Dovrat D, Dahan D, Sherman S, Tsirkas I, Elia N, Aharoni A.

Cell Rep. 2018 Jul 3;24(1):252-258. doi: 10.1016/j.celrep.2018.06.018.


Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems.

Saper G, Kallmann D, Conzuelo F, Zhao F, Tóth TN, Liveanu V, Meir S, Szymanski J, Aharoni A, Schuhmann W, Rothschild A, Schuster G, Adir N.

Nat Commun. 2018 Jun 4;9(1):2168. doi: 10.1038/s41467-018-04613-x.


Short-chain dehydrogenase/reductase governs steroidal specialized metabolites structural diversity and toxicity in the genus Solanum.

Sonawane PD, Heinig U, Panda S, Gilboa NS, Yona M, Kumar SP, Alkan N, Unger T, Bocobza S, Pliner M, Malitsky S, Tkachev M, Meir S, Rogachev I, Aharoni A.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):E5419-E5428. doi: 10.1073/pnas.1804835115. Epub 2018 May 21.


Point Mutation of a Non-Elastase-Binding Site in Human α1-Antitrypsin Alters Its Anti-Inflammatory Properties.

Lior Y, Zaretsky M, Ochayon DE, Lotysh D, Baranovski BM, Schuster R, Guttman O, Aharoni A, Lewis EC.

Front Immunol. 2018 May 1;9:759. doi: 10.3389/fimmu.2018.00759. eCollection 2018.


Enhanced PKMT-substrate recognition through non active-site interactions.

Kublanovsky M, Aharoni A, Levy D.

Biochem Biophys Res Commun. 2018 Jul 2;501(4):1029-1033. doi: 10.1016/j.bbrc.2018.05.103. Epub 2018 May 24.


Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges.

Töpfer N, Seaver SMD, Aharoni A.

Methods Mol Biol. 2018;1778:297-310. doi: 10.1007/978-1-4939-7819-9_21.


A Complete Pipeline for Generating a High-Resolution LC-MS-Based Reference Mass Spectra Library.

Shahaf N, Aharoni A, Rogachev I.

Methods Mol Biol. 2018;1778:193-206. doi: 10.1007/978-1-4939-7819-9_14.


Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.

Goldenzweig A, Goldsmith M, Hill SE, Gertman O, Laurino P, Ashani Y, Dym O, Unger T, Albeck S, Prilusky J, Lieberman RL, Aharoni A, Silman I, Sussman JL, Tawfik DS, Fleishman SJ.

Mol Cell. 2018 Apr 19;70(2):380. doi: 10.1016/j.molcel.2018.03.035. No abstract available.


Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system.

Dahan-Meir T, Filler-Hayut S, Melamed-Bessudo C, Bocobza S, Czosnek H, Aharoni A, Levy AA.

Plant J. 2018 Jul;95(1):5-16. doi: 10.1111/tpj.13932. Epub 2018 May 21.


Marker-free genetic manipulations in yeast using CRISPR/CAS9 system.

Soreanu I, Hendler A, Dahan D, Dovrat D, Aharoni A.

Curr Genet. 2018 Oct;64(5):1129-1139. doi: 10.1007/s00294-018-0831-y. Epub 2018 Apr 6.


Directed evolution of SIRT6 for improved deacylation and glucose homeostasis maintenance.

Gertman O, Omer D, Hendler A, Stein D, Onn L, Khukhin Y, Portillo M, Zarivach R, Cohen HY, Toiber D, Aharoni A.

Sci Rep. 2018 Feb 23;8(1):3538. doi: 10.1038/s41598-018-21887-9.


Proteasome accessory factor A (PafA) transferase activity makes sense in the light of its homology with glutamine synthetase.

Hecht N, Regev O, Dovrat D, Aharoni A, Gur E.

J Mol Biol. 2018 Mar 2;430(5):668-681. doi: 10.1016/j.jmb.2018.01.009. Epub 2018 Feb 2.


WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta.

Shinde BA, Dholakia BB, Hussain K, Aharoni A, Giri AP, Kamble AC.

Plant Biotechnol J. 2018 Aug;16(8):1502-1513. doi: 10.1111/pbi.12892. Epub 2018 May 24.


Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.

Polturak G, Heinig U, Grossman N, Battat M, Leshkowitz D, Malitsky S, Rogachev I, Aharoni A.

Mol Plant. 2018 Jan 8;11(1):189-204. doi: 10.1016/j.molp.2017.12.002. Epub 2017 Dec 14.


Mining Plants for Bacterial Quorum Sensing Modulators.

David S, Mandabi A, Uzi S, Aharoni A, Meijler MM.

ACS Chem Biol. 2018 Jan 19;13(1):247-252. doi: 10.1021/acschembio.7b00859. Epub 2017 Dec 27.


The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.

Nir I, Shohat H, Panizel I, Olszewski N, Aharoni A, Weiss D.

Plant Cell. 2017 Dec;29(12):3186-3197. doi: 10.1105/tpc.17.00542. Epub 2017 Nov 17.


"La Vie en Rose": Biosynthesis, Sources, and Applications of Betalain Pigments.

Polturak G, Aharoni A.

Mol Plant. 2018 Jan 8;11(1):7-22. doi: 10.1016/j.molp.2017.10.008. Epub 2017 Dec 26. Review.


Assimilation of 'omics' strategies to study the cuticle layer and suberin lamellae in plants.

Cohen H, Szymanski J, Aharoni A, Dominguez E.

J Exp Bot. 2017 Nov 9;68(19):5389-5400. doi: 10.1093/jxb/erx348. Review.


Dynamic metabolic reprogramming of steroidal glycol-alkaloid and phenylpropanoid biosynthesis may impart early blight resistance in wild tomato (Solanum arcanum Peralta).

Shinde BA, Dholakia BB, Hussain K, Panda S, Meir S, Rogachev I, Aharoni A, Giri AP, Kamble AC.

Plant Mol Biol. 2017 Nov;95(4-5):411-423. doi: 10.1007/s11103-017-0660-2. Epub 2017 Oct 4.


Increased Potency of a Bi-specific TL1A-ADAM17 (TACE) Inhibitor by Cell Surface Targeting.

Weizman T, Levin I, Zaretsky M, Sagi I, Aharoni A.

Front Mol Biosci. 2017 Aug 22;4:61. doi: 10.3389/fmolb.2017.00061. eCollection 2017.


Metabolic Flexibility Underpins Growth Capabilities of the Fastest Growing Alga.

Treves H, Murik O, Kedem I, Eisenstadt D, Meir S, Rogachev I, Szymanski J, Keren N, Orf I, Tiburcio AF, Alcázar R, Aharoni A, Kopka J, Kaplan A.

Curr Biol. 2017 Aug 21;27(16):2559-2567.e3. doi: 10.1016/j.cub.2017.07.014. Epub 2017 Aug 10.


Pathogen and Pest Responses Are Altered Due to RNAi-Mediated Knockdown of GLYCOALKALOID METABOLISM 4 in Solanum tuberosum.

Paudel JR, Davidson C, Song J, Maxim I, Aharoni A, Tai HH.

Mol Plant Microbe Interact. 2017 Nov;30(11):876-885. doi: 10.1094/MPMI-02-17-0033-R. Epub 2017 Sep 6.


The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.

Zhu X, Yu J, Shi J, Tohge T, Fernie AR, Meir S, Aharoni A, Xu D, Zhang D, Liang W.

J Integr Plant Biol. 2017 Sep;59(9):612-628. doi: 10.1111/jipb.12574.


Engineered gray mold resistance, antioxidant capacity, and pigmentation in betalain-producing crops and ornamentals.

Polturak G, Grossman N, Vela-Corcia D, Dong Y, Nudel A, Pliner M, Levy M, Rogachev I, Aharoni A.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9062-9067. doi: 10.1073/pnas.1707176114. Epub 2017 Jul 31.


The evolution of a G1/S transcriptional network in yeasts.

Hendler A, Medina EM, Buchler NE, de Bruin RAM, Aharoni A.

Curr Genet. 2018 Feb;64(1):81-86. doi: 10.1007/s00294-017-0726-3. Epub 2017 Jul 25. Review.


Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism.

Sonawane PD, Pollier J, Panda S, Szymanski J, Massalha H, Yona M, Unger T, Malitsky S, Arendt P, Pauwels L, Almekias-Siegl E, Rogachev I, Meir S, Cárdenas PD, Masri A, Petrikov M, Schaller H, Schaffer AA, Kamble A, Giri AP, Goossens A, Aharoni A.

Nat Plants. 2017 Jun 12;3:17101. doi: 10.1038/nplants.2017.101.


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