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Items: 1 to 50 of 260

1.

Appropriate thiamin pyrophosphate levels are required for acclimation to changes in photoperiod.

Rosado-Souza L, Proost S, Moulin M, Bergmann S, Bocobza S, Aharoni A, Fitzpatrick TB, Mutwil M, Fernie AR, Obata T.

Plant Physiol. 2019 Mar 5. pii: pp.01346.2018. doi: 10.1104/pp.18.01346. [Epub ahead of print]

2.

Indole derivatives maintain the status quo between beneficial biofilms and their plant hosts.

Ganin H, Kemper N, Meir S, Rogachev I, Ely S, Massalha H, Mandabi A, Keren-Paz A, Shanzer A, Meijler M, Malitsky S, Aharoni A, Kolodkin-Gal I.

Mol Plant Microbe Interact. 2019 Feb 27. doi: 10.1094/MPMI-12-18-0327-R. [Epub ahead of print]

PMID:
30811315
3.

A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning.

Battat M, Eitan A, Rogachev I, Hanhineva K, Fernie AR, Tohge T, Beekwilder J, Aharoni A.

Plant Physiol. 2019 Feb 12. pii: pp.00009.2019. doi: 10.1104/pp.19.00009. [Epub ahead of print]

4.

Tissue-specific organic acid metabolism in reproductive and non-reproductive parts of the fig fruit is partially induced by pollination.

Lama K, Peer R, Shlizerman L, Meir S, Doron-Faigenboim A, Sadka A, Aharoni A, Flaishman MA.

Physiol Plant. 2019 Feb 10. doi: 10.1111/ppl.12941. [Epub ahead of print]

PMID:
30740711
5.

Miso: An R Package for Multiple Isotope Labeling Assisted Metabolomics Data Analysis.

Dong Y, Feldberg L, Aharoni A.

Bioinformatics. 2019 Feb 6. doi: 10.1093/bioinformatics/btz092. [Epub ahead of print]

PMID:
30726876
6.

In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids.

Schleyer G, Shahaf N, Ziv C, Dong Y, Meoded RA, Helfrich EJN, Schatz D, Rosenwasser S, Rogachev I, Aharoni A, Piel J, Vardi A.

Nat Microbiol. 2019 Mar;4(3):527-538. doi: 10.1038/s41564-018-0336-y. Epub 2019 Feb 4.

PMID:
30718847
7.

A Multilevel Study of Melon Fruit Reticulation Provides Insight into Skin Ligno-suberization Hallmarks.

Cohen H, Dong Y, Szymanski JJ, Lashbrooke JG, Meir S, Almekias-Siegl E, Zeisler-Diehl VV, Schreiber L, Aharoni A.

Plant Physiol. 2019 Jan 30. pii: pp.01158.2018. doi: 10.1104/pp.18.01158. [Epub ahead of print]

8.

Arabidopsis HSP70-16 is required for flower opening under normal or mild heat stress temperatures.

Chen X, Shi L, Chen Y, Zhu L, Zhang D, Xiao S, Aharoni A, Shi J, Xu J.

Plant Cell Environ. 2019 Apr;42(4):1190-1204. doi: 10.1111/pce.13480. Epub 2018 Dec 10.

PMID:
30426513
9.

Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.

Barak-Gavish N, Frada MJ, Ku C, Lee PA, DiTullio GR, Malitsky S, Aharoni A, Green SJ, Rotkopf R, Kartvelishvily E, Sheyn U, Schatz D, Vardi A.

Sci Adv. 2018 Oct 24;4(10):eaau5716. doi: 10.1126/sciadv.aau5716. eCollection 2018 Oct.

10.

Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures.

Dahan D, Tsirkas I, Dovrat D, Sparks MA, Singh SP, Galletto R, Aharoni A.

Nucleic Acids Res. 2018 Dec 14;46(22):11847-11857. doi: 10.1093/nar/gky1065.

11.

DLEMMA-MS-Imaging for Identification of Spatially Localized Metabolites and Metabolic Network Map Reconstruction.

Feldberg L, Dong Y, Heinig U, Rogachev I, Aharoni A.

Anal Chem. 2018 Sep 4;90(17):10231-10238. doi: 10.1021/acs.analchem.8b01644. Epub 2018 Aug 16.

PMID:
30063330
12.

Insights into Tissue-specific Specialized Metabolism in Tieguanyin Tea Cultivar by Untargeted Metabolomics.

Chen S, Lin J, Liu H, Gong Z, Wang X, Li M, Aharoni A, Yang Z, Yu X.

Molecules. 2018 Jul 21;23(7). pii: E1817. doi: 10.3390/molecules23071817.

13.

A bi-specific inhibitor targeting IL-17A and MMP-9 reduces invasion and motility in MDA-MB-231 cells.

Koslawsky D, Zaretsky M, Alcalay R, Mazor O, Aharoni A, Papo N.

Oncotarget. 2018 Jun 19;9(47):28500-28513. doi: 10.18632/oncotarget.25526. eCollection 2018 Jun 19.

14.

The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes.

Tzfadia O, Bocobza S, Defoort J, Almekias-Siegl E, Panda S, Levy M, Storme V, Rombauts S, Jaitin DA, Keren-Shaul H, Van de Peer Y, Aharoni A.

Plant J. 2018 Oct;96(1):223-232. doi: 10.1111/tpj.14015. Epub 2018 Jul 29.

PMID:
29979480
15.

A Live-Cell Imaging Approach for Measuring DNA Replication Rates.

Dovrat D, Dahan D, Sherman S, Tsirkas I, Elia N, Aharoni A.

Cell Rep. 2018 Jul 3;24(1):252-258. doi: 10.1016/j.celrep.2018.06.018.

16.

Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems.

Saper G, Kallmann D, Conzuelo F, Zhao F, Tóth TN, Liveanu V, Meir S, Szymanski J, Aharoni A, Schuhmann W, Rothschild A, Schuster G, Adir N.

Nat Commun. 2018 Jun 4;9(1):2168. doi: 10.1038/s41467-018-04613-x.

17.

Short-chain dehydrogenase/reductase governs steroidal specialized metabolites structural diversity and toxicity in the genus Solanum.

Sonawane PD, Heinig U, Panda S, Gilboa NS, Yona M, Kumar SP, Alkan N, Unger T, Bocobza S, Pliner M, Malitsky S, Tkachev M, Meir S, Rogachev I, Aharoni A.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):E5419-E5428. doi: 10.1073/pnas.1804835115. Epub 2018 May 21.

18.

Point Mutation of a Non-Elastase-Binding Site in Human α1-Antitrypsin Alters Its Anti-Inflammatory Properties.

Lior Y, Zaretsky M, Ochayon DE, Lotysh D, Baranovski BM, Schuster R, Guttman O, Aharoni A, Lewis EC.

Front Immunol. 2018 May 1;9:759. doi: 10.3389/fimmu.2018.00759. eCollection 2018.

19.

Enhanced PKMT-substrate recognition through non active-site interactions.

Kublanovsky M, Aharoni A, Levy D.

Biochem Biophys Res Commun. 2018 Jul 2;501(4):1029-1033. doi: 10.1016/j.bbrc.2018.05.103. Epub 2018 May 24.

PMID:
29778536
20.

Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges.

Töpfer N, Seaver SMD, Aharoni A.

Methods Mol Biol. 2018;1778:297-310. doi: 10.1007/978-1-4939-7819-9_21.

PMID:
29761447
21.

A Complete Pipeline for Generating a High-Resolution LC-MS-Based Reference Mass Spectra Library.

Shahaf N, Aharoni A, Rogachev I.

Methods Mol Biol. 2018;1778:193-206. doi: 10.1007/978-1-4939-7819-9_14.

PMID:
29761440
22.

Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.

Goldenzweig A, Goldsmith M, Hill SE, Gertman O, Laurino P, Ashani Y, Dym O, Unger T, Albeck S, Prilusky J, Lieberman RL, Aharoni A, Silman I, Sussman JL, Tawfik DS, Fleishman SJ.

Mol Cell. 2018 Apr 19;70(2):380. doi: 10.1016/j.molcel.2018.03.035. No abstract available.

23.

Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system.

Dahan-Meir T, Filler-Hayut S, Melamed-Bessudo C, Bocobza S, Czosnek H, Aharoni A, Levy AA.

Plant J. 2018 Jul;95(1):5-16. doi: 10.1111/tpj.13932. Epub 2018 May 21.

PMID:
29668111
24.

Marker-free genetic manipulations in yeast using CRISPR/CAS9 system.

Soreanu I, Hendler A, Dahan D, Dovrat D, Aharoni A.

Curr Genet. 2018 Oct;64(5):1129-1139. doi: 10.1007/s00294-018-0831-y. Epub 2018 Apr 6.

PMID:
29626221
25.

Directed evolution of SIRT6 for improved deacylation and glucose homeostasis maintenance.

Gertman O, Omer D, Hendler A, Stein D, Onn L, Khukhin Y, Portillo M, Zarivach R, Cohen HY, Toiber D, Aharoni A.

Sci Rep. 2018 Feb 23;8(1):3538. doi: 10.1038/s41598-018-21887-9.

26.

Proteasome accessory factor A (PafA) transferase activity makes sense in the light of its homology with glutamine synthetase.

Hecht N, Regev O, Dovrat D, Aharoni A, Gur E.

J Mol Biol. 2018 Mar 2;430(5):668-681. doi: 10.1016/j.jmb.2018.01.009. Epub 2018 Feb 2.

PMID:
29397952
27.

WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta.

Shinde BA, Dholakia BB, Hussain K, Aharoni A, Giri AP, Kamble AC.

Plant Biotechnol J. 2018 Aug;16(8):1502-1513. doi: 10.1111/pbi.12892. Epub 2018 May 24.

28.

Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.

Polturak G, Heinig U, Grossman N, Battat M, Leshkowitz D, Malitsky S, Rogachev I, Aharoni A.

Mol Plant. 2018 Jan 8;11(1):189-204. doi: 10.1016/j.molp.2017.12.002. Epub 2017 Dec 14.

29.

Mining Plants for Bacterial Quorum Sensing Modulators.

David S, Mandabi A, Uzi S, Aharoni A, Meijler MM.

ACS Chem Biol. 2018 Jan 19;13(1):247-252. doi: 10.1021/acschembio.7b00859. Epub 2017 Dec 27.

PMID:
29215859
30.

The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.

Nir I, Shohat H, Panizel I, Olszewski N, Aharoni A, Weiss D.

Plant Cell. 2017 Dec;29(12):3186-3197. doi: 10.1105/tpc.17.00542. Epub 2017 Nov 17.

31.

"La Vie en Rose": Biosynthesis, Sources, and Applications of Betalain Pigments.

Polturak G, Aharoni A.

Mol Plant. 2018 Jan 8;11(1):7-22. doi: 10.1016/j.molp.2017.10.008. Epub 2017 Dec 26. Review.

32.

Assimilation of 'omics' strategies to study the cuticle layer and suberin lamellae in plants.

Cohen H, Szymanski J, Aharoni A, Dominguez E.

J Exp Bot. 2017 Nov 9;68(19):5389-5400. doi: 10.1093/jxb/erx348. Review.

PMID:
29040673
33.

Dynamic metabolic reprogramming of steroidal glycol-alkaloid and phenylpropanoid biosynthesis may impart early blight resistance in wild tomato (Solanum arcanum Peralta).

Shinde BA, Dholakia BB, Hussain K, Panda S, Meir S, Rogachev I, Aharoni A, Giri AP, Kamble AC.

Plant Mol Biol. 2017 Nov;95(4-5):411-423. doi: 10.1007/s11103-017-0660-2. Epub 2017 Oct 4.

PMID:
28980117
34.

Increased Potency of a Bi-specific TL1A-ADAM17 (TACE) Inhibitor by Cell Surface Targeting.

Weizman T, Levin I, Zaretsky M, Sagi I, Aharoni A.

Front Mol Biosci. 2017 Aug 22;4:61. doi: 10.3389/fmolb.2017.00061. eCollection 2017.

35.

Metabolic Flexibility Underpins Growth Capabilities of the Fastest Growing Alga.

Treves H, Murik O, Kedem I, Eisenstadt D, Meir S, Rogachev I, Szymanski J, Keren N, Orf I, Tiburcio AF, Alcázar R, Aharoni A, Kopka J, Kaplan A.

Curr Biol. 2017 Aug 21;27(16):2559-2567.e3. doi: 10.1016/j.cub.2017.07.014. Epub 2017 Aug 10.

36.

Pathogen and Pest Responses Are Altered Due to RNAi-Mediated Knockdown of GLYCOALKALOID METABOLISM 4 in Solanum tuberosum.

Paudel JR, Davidson C, Song J, Maxim I, Aharoni A, Tai HH.

Mol Plant Microbe Interact. 2017 Nov;30(11):876-885. doi: 10.1094/MPMI-02-17-0033-R. Epub 2017 Sep 6.

37.

The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.

Zhu X, Yu J, Shi J, Tohge T, Fernie AR, Meir S, Aharoni A, Xu D, Zhang D, Liang W.

J Integr Plant Biol. 2017 Sep;59(9):612-628. doi: 10.1111/jipb.12574.

PMID:
28783252
38.

Engineered gray mold resistance, antioxidant capacity, and pigmentation in betalain-producing crops and ornamentals.

Polturak G, Grossman N, Vela-Corcia D, Dong Y, Nudel A, Pliner M, Levy M, Rogachev I, Aharoni A.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9062-9067. doi: 10.1073/pnas.1707176114. Epub 2017 Jul 31.

39.

The evolution of a G1/S transcriptional network in yeasts.

Hendler A, Medina EM, Buchler NE, de Bruin RAM, Aharoni A.

Curr Genet. 2018 Feb;64(1):81-86. doi: 10.1007/s00294-017-0726-3. Epub 2017 Jul 25. Review.

PMID:
28744706
40.

Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism.

Sonawane PD, Pollier J, Panda S, Szymanski J, Massalha H, Yona M, Unger T, Malitsky S, Arendt P, Pauwels L, Almekias-Siegl E, Rogachev I, Meir S, Cárdenas PD, Masri A, Petrikov M, Schaller H, Schaffer AA, Kamble A, Giri AP, Goossens A, Aharoni A.

Nat Plants. 2017 Jun 12;3:17101. doi: 10.1038/nplants.2017.101.

PMID:
28604681
41.

Repression of CYSTATHIONINE γ-SYNTHASE in Seeds Recruits the S-Methylmethionine Cycle.

Cohen H, Hacham Y, Panizel I, Rogachev I, Aharoni A, Amir R.

Plant Physiol. 2017 Jul;174(3):1322-1333. doi: 10.1104/pp.17.00579. Epub 2017 May 23.

42.

Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness.

Hendler A, Medina EM, Kishkevich A, Abu-Qarn M, Klier S, Buchler NE, de Bruin RAM, Aharoni A.

PLoS Genet. 2017 May 15;13(5):e1006778. doi: 10.1371/journal.pgen.1006778. eCollection 2017 May.

43.

The PhytoClust tool for metabolic gene clusters discovery in plant genomes.

Töpfer N, Fuchs LM, Aharoni A.

Nucleic Acids Res. 2017 Jul 7;45(12):7049-7063. doi: 10.1093/nar/gkx404.

44.

Uncovering tomato quantitative trait loci and candidate genes for fruit cuticular lipid composition using the Solanum pennellii introgression line population.

Fernandez-Moreno JP, Levy-Samoha D, Malitsky S, Monforte AJ, Orzaez D, Aharoni A, Granell A.

J Exp Bot. 2017 May 17;68(11):2703-2716. doi: 10.1093/jxb/erx134.

45.

Live imaging of root-bacteria interactions in a microfluidics setup.

Massalha H, Korenblum E, Malitsky S, Shapiro OH, Aharoni A.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4549-4554. doi: 10.1073/pnas.1618584114. Epub 2017 Mar 27.

46.

Small molecules below-ground: the role of specialized metabolites in the rhizosphere.

Massalha H, Korenblum E, Tholl D, Aharoni A.

Plant J. 2017 May;90(4):788-807. doi: 10.1111/tpj.13543. Epub 2017 Apr 22.

47.

Directed evolution of a soluble human DR3 receptor for the inhibition of TL1A induced cytokine secretion.

Levin I, Zaretsky M, Aharoni A.

PLoS One. 2017 Mar 9;12(3):e0173460. doi: 10.1371/journal.pone.0173460. eCollection 2017.

48.

The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis.

Miettinen K, Pollier J, Buyst D, Arendt P, Csuk R, Sommerwerk S, Moses T, Mertens J, Sonawane PD, Pauwels L, Aharoni A, Martins J, Nelson DR, Goossens A.

Nat Commun. 2017 Feb 6;8:14153. doi: 10.1038/ncomms14153.

49.

Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development.

Szymanski J, Levin Y, Savidor A, Breitel D, Chappell-Maor L, Heinig U, Töpfer N, Aharoni A.

Plant J. 2017 Apr;90(2):396-417. doi: 10.1111/tpj.13490. Epub 2017 Mar 22.

50.

Silicon promotes cytokinin biosynthesis and delays senescence in Arabidopsis and Sorghum.

Markovich O, Steiner E, Kouřil Š, Tarkowski P, Aharoni A, Elbaum R.

Plant Cell Environ. 2017 Jul;40(7):1189-1196. doi: 10.1111/pce.12913. Epub 2017 Apr 12.

PMID:
28102542

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