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Items: 25

1.

Niche-specific metabolic adaptation in biotrophic and necrotrophic oomycetes is manifested in differential use of nutrients, variation in gene content, and enzyme evolution.

Ah-Fong AMV, Kagda MS, Abrahamian M, Judelson HS.

PLoS Pathog. 2019 Apr 19;15(4):e1007729. doi: 10.1371/journal.ppat.1007729. eCollection 2019 Apr.

2.

Defining Transgene Insertion Sites and Off-Target Effects of Homology-Based Gene Silencing Informs the Application of Functional Genomics Tools in Phytophthora infestans.

Vu AL, Leesutthiphonchai W, Ah-Fong AMV, Judelson HS.

Mol Plant Microbe Interact. 2019 Aug;32(8):915-927. doi: 10.1094/MPMI-09-18-0265-TA. Epub 2019 Jun 25.

PMID:
30811313
3.

Exchanges at the Plant-Oomycete Interface That Influence Disease.

Judelson HS, Ah-Fong AMV.

Plant Physiol. 2019 Apr;179(4):1198-1211. doi: 10.1104/pp.18.00979. Epub 2018 Dec 11. Review. No abstract available.

4.

Illuminating Phytophthora Biology with Fluorescent Protein Tags.

Ah-Fong AMV, Kagda M, Judelson HS.

Methods Mol Biol. 2018;1848:119-129. doi: 10.1007/978-1-4939-8724-5_10.

PMID:
30182233
5.

Phosphagen kinase function in flagellated spores of the oomycete Phytophthora infestans integrates transcriptional regulation, metabolic dynamics and protein retargeting.

Kagda MS, Vu AL, Ah-Fong AMV, Judelson HS.

Mol Microbiol. 2018 Oct;110(2):296-308. doi: 10.1111/mmi.14108. Epub 2018 Oct 3.

PMID:
30137656
6.

How Does Phytophthora infestans Evade Control Efforts? Modern Insight Into the Late Blight Disease.

Leesutthiphonchai W, Vu AL, Ah-Fong AMV, Judelson HS.

Phytopathology. 2018 Aug;108(8):916-924. doi: 10.1094/PHYTO-04-18-0130-IA. Epub 2018 Jul 6. Review.

PMID:
29979126
7.

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps.

Pan W, Wanamaker SI, Ah-Fong AMV, Judelson HS, Lonardi S.

Bioinformatics. 2018 Jul 1;34(13):i43-i51. doi: 10.1093/bioinformatics/bty255.

8.

Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development.

Niu X, Ah-Fong AMV, Lopez LA, Judelson HS.

PLoS One. 2018 Jun 13;13(6):e0198186. doi: 10.1371/journal.pone.0198186. eCollection 2018.

9.

Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria.

Abrahamian M, Kagda M, Ah-Fong AMV, Judelson HS.

BMC Evol Biol. 2017 Dec 4;17(1):241. doi: 10.1186/s12862-017-1087-8.

10.
12.

Gene Expression and Silencing Studies in Phytophthora infestans Reveal Infection-Specific Nutrient Transporters and a Role for the Nitrate Reductase Pathway in Plant Pathogenesis.

Abrahamian M, Ah-Fong AM, Davis C, Andreeva K, Judelson HS.

PLoS Pathog. 2016 Dec 9;12(12):e1006097. doi: 10.1371/journal.ppat.1006097. eCollection 2016 Dec.

13.

Vectors for fluorescent protein tagging in Phytophthora: tools for functional genomics and cell biology.

Ah-Fong AM, Judelson HS.

Fungal Biol. 2011 Sep;115(9):882-90. doi: 10.1016/j.funbio.2011.07.001. Epub 2011 Jul 18.

PMID:
21872185
14.
15.

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome.

Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI, Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RHY, Judelson H, Kamoun S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JDG, McDowell JM, Beynon J, Tyler BM.

Science. 2010 Dec 10;330(6010):1549-1551. doi: 10.1126/science.1195203.

16.

The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups.

Judelson HS, Ah-Fong AM.

BMC Genomics. 2010 Dec 9;11:700. doi: 10.1186/1471-2164-11-700.

17.

An RNA symbiont enhances heat tolerance and secondary homothallism in the oomycete Phytophthora infestans.

Judelson HS, Ah-Fong AM, Fabritius AL.

Microbiology. 2010 Jul;156(Pt 7):2026-34. doi: 10.1099/mic.0.039305-0. Epub 2010 Apr 1.

PMID:
20360179
18.

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C.

Nature. 2009 Sep 17;461(7262):393-8. doi: 10.1038/nature08358. Epub 2009 Sep 9.

PMID:
19741609
19.

Gene expression changes during asexual sporulation by the late blight agent Phytophthora infestans occur in discrete temporal stages.

Judelson HS, Narayan RD, Ah-Fong AM, Kim KS.

Mol Genet Genomics. 2009 Feb;281(2):193-206. doi: 10.1007/s00438-008-0407-5. Epub 2008 Dec 3.

PMID:
19050928
20.

Optimization of transgene-mediated silencing in Phytophthora infestans and its association with small-interfering RNAs.

Ah-Fong AM, Bormann-Chung CA, Judelson HS.

Fungal Genet Biol. 2008 Aug;45(8):1197-205. doi: 10.1016/j.fgb.2008.05.009. Epub 2008 May 29.

PMID:
18599326
21.

Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome.

Judelson HS, Ah-Fong AM, Aux G, Avrova AO, Bruce C, Cakir C, da Cunha L, Grenville-Briggs L, Latijnhouwers M, Ligterink W, Meijer HJ, Roberts S, Thurber CS, Whisson SC, Birch PR, Govers F, Kamoun S, van West P, Windass J.

Mol Plant Microbe Interact. 2008 Apr;21(4):433-47. doi: 10.1094/MPMI-21-4-0433.

22.

Architecture of the sporulation-specific Cdc14 promoter from the oomycete Phytophthora infestans.

Ah-Fong AM, Xiang Q, Judelson HS.

Eukaryot Cell. 2007 Dec;6(12):2222-30. Epub 2007 Oct 19.

23.

The hAT -like DNA transposon DodoPi resides in a cluster of retro- and DNA transposons in the stramenopile Phytophthora infestans.

Ah Fong AM, Judelson HS.

Mol Genet Genomics. 2004 Jun;271(5):577-85. Epub 2004 Apr 20.

PMID:
15098122
25.

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