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Items: 15

1.

The human gut pan-microbiome presents a compositional core formed by discrete phylogenetic units.

Aguirre de Cárcer D.

Sci Rep. 2018 Sep 19;8(1):14069. doi: 10.1038/s41598-018-32221-8.

2.

Infection with diverse immune-modulating poxviruses elicits different compositional shifts in the mouse gut microbiome.

Aguirre de Cárcer D, Hernáez B, Rastrojo A, Alcamí A.

PLoS One. 2017 Mar 10;12(3):e0173697. doi: 10.1371/journal.pone.0173697. eCollection 2017.

3.

Colonic microbiota can promote rapid local improvement of murine colitis by thioguanine independently of T lymphocytes and host metabolism.

Oancea I, Movva R, Das I, Aguirre de Cárcer D, Schreiber V, Yang Y, Purdon A, Harrington B, Proctor M, Wang R, Sheng Y, Lobb M, Lourie R, Ó Cuív P, Duley JA, Begun J, Florin TH.

Gut. 2017 Jan;66(1):59-69. doi: 10.1136/gutjnl-2015-310874. Epub 2016 Jul 13.

4.

Metagenomic analysis of lacustrine viral diversity along a latitudinal transect of the Antarctic Peninsula.

Aguirre de Cárcer D, López-Bueno A, Alonso-Lobo JM, Quesada A, Alcamí A.

FEMS Microbiol Ecol. 2016 Jun;92(6):fiw074. doi: 10.1093/femsec/fiw074. Epub 2016 Apr 7.

PMID:
27059864
5.

Ecosystem function decays by fungal outbreaks in Antarctic microbial mats.

Velázquez D, López-Bueno A, Aguirre de Cárcer D, de los Ríos A, Alcamí A, Quesada A.

Sci Rep. 2016 Mar 14;6:22954. doi: 10.1038/srep22954.

6.

Biodiversity and distribution of polar freshwater DNA viruses.

Aguirre de Cárcer D, López-Bueno A, Pearce DA, Alcamí A.

Sci Adv. 2015 Jun 19;1(5):e1400127. doi: 10.1126/sciadv.1400127. eCollection 2015 Jun.

7.

Evaluation of viral genome assembly and diversity estimation in deep metagenomes.

Aguirre de Cárcer D, Angly FE, Alcamí A.

BMC Genomics. 2014 Nov 18;15:989. doi: 10.1186/1471-2164-15-989.

8.

ZAP-70 genotype disrupts the relationship between microbiota and host, leading to spondyloarthritis and ileitis in SKG mice.

Rehaume LM, Mondot S, Aguirre de Cárcer D, Velasco J, Benham H, Hasnain SZ, Bowman J, Ruutu M, Hansbro PM, McGuckin MA, Morrison M, Thomas R.

Arthritis Rheumatol. 2014 Oct;66(10):2780-92. doi: 10.1002/art.38773.

9.

Considering external information to improve the phylogenetic comparison of microbial communities: a new approach based on constrained Double Principal Coordinates Analysis (cDPCoA).

Dray S, Pavoine S, Aguirre de Cárcer D.

Mol Ecol Resour. 2015 Mar;15(2):242-9. doi: 10.1111/1755-0998.12300. Epub 2014 Jul 18.

10.

The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue.

Ó Cuív P, Aguirre de Cárcer D, Jones M, Klaassens ES, Worthley DL, Whitehall VL, Kang S, McSweeney CS, Leggett BA, Morrison M.

Microb Ecol. 2011 Feb;61(2):353-62. doi: 10.1007/s00248-010-9771-x. Epub 2010 Dec 14.

PMID:
21153634
11.

Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon.

Aguirre de Cárcer D, Cuív PO, Wang T, Kang S, Worthley D, Whitehall V, Gordon I, McSweeney C, Leggett B, Morrison M.

ISME J. 2011 May;5(5):801-9. doi: 10.1038/ismej.2010.177. Epub 2010 Dec 2.

12.

Highlighting new phylogenetic specificities of Crohn's disease microbiota.

Mondot S, Kang S, Furet JP, Aguirre de Carcer D, McSweeney C, Morrison M, Marteau P, Doré J, Leclerc M.

Inflamm Bowel Dis. 2011 Jan;17(1):185-92. doi: 10.1002/ibd.21436. Epub 2010 Aug 18.

PMID:
20722058
13.

Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation.

Pope PB, Totsika M, Aguirre de Carcer D, Schembri MA, Morrison M.

ISME J. 2011 Feb;5(2):341-50. doi: 10.1038/ismej.2010.116. Epub 2010 Jul 29.

14.

Efficient rhizosphere colonization by Pseudomonas fluorescens f113 mutants unable to form biofilms on abiotic surfaces.

Barahona E, Navazo A, Yousef-Coronado F, Aguirre de Cárcer D, Martínez-Granero F, Espinosa-Urgel M, Martín M, Rivilla R.

Environ Microbiol. 2010 Dec;12(12):3185-95. doi: 10.1111/j.1462-2920.2010.02291.x.

PMID:
20626456
15.

Polychlorinated biphenyl rhizoremediation by Pseudomonas fluorescens F113 derivatives, using a Sinorhizobium meliloti nod system to drive bph gene expression.

Villacieros M, Whelan C, Mackova M, Molgaard J, Sánchez-Contreras M, Lloret J, Aguirre de Cárcer D, Oruezábal RI, Bolaños L, Macek T, Karlson U, Dowling DN, Martín M, Rivilla R.

Appl Environ Microbiol. 2005 May;71(5):2687-94.

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