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Items: 27

1.

Towards global data products of Essential Biodiversity Variables on species traits.

Kissling WD, Walls R, Bowser A, Jones MO, Kattge J, Agosti D, Amengual J, Basset A, van Bodegom PM, Cornelissen JHC, Denny EG, Deudero S, Egloff W, Elmendorf SC, Alonso García E, Jones KD, Jones OR, Lavorel S, Lear D, Navarro LM, Pawar S, Pirzl R, Rüger N, Sal S, Salguero-Gómez R, Schigel D, Schulz KS, Skidmore A, Guralnick RP.

Nat Ecol Evol. 2018 Oct;2(10):1531-1540. doi: 10.1038/s41559-018-0667-3. Epub 2018 Sep 17. Review.

PMID:
30224814
2.

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.

Senderov V, Simov K, Franz N, Stoev P, Catapano T, Agosti D, Sautter G, Morris RA, Penev L.

J Biomed Semantics. 2018 Jan 18;9(1):5. doi: 10.1186/s13326-017-0174-5.

3.

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale.

Kissling WD, Ahumada JA, Bowser A, Fernandez M, Fernández N, García EA, Guralnick RP, Isaac NJB, Kelling S, Los W, McRae L, Mihoub JB, Obst M, Santamaria M, Skidmore AK, Williams KJ, Agosti D, Amariles D, Arvanitidis C, Bastin L, De Leo F, Egloff W, Elith J, Hobern D, Martin D, Pereira HM, Pesole G, Peterseil J, Saarenmaa H, Schigel D, Schmeller DS, Segata N, Turak E, Uhlir PF, Wee B, Hardisty AR.

Biol Rev Camb Philos Soc. 2018 Feb;93(1):600-625. doi: 10.1111/brv.12359. Epub 2017 Aug 2.

PMID:
28766908
4.

A global database of ant species abundances.

Gibb H, Dunn RR, Sanders NJ, Grossman BF, Photakis M, Abril S, Agosti D, Andersen AN, Angulo E, Armbrecht I, Arnan X, Baccaro FB, Bishop TR, Boulay R, Brühl C, Castracani C, Cerda X, Del Toro I, Delsinne T, Diaz M, Donoso DA, Ellison AM, Enriquez ML, Fayle TM, Feener DH Jr, Fisher BL, Fisher RN, Fitzpatrick MC, Gómez C, Gotelli NJ, Gove A, Grasso DA, Groc S, Guenard B, Gunawardene N, Heterick B, Hoffmann B, Janda M, Jenkins C, Kaspari M, Klimes P, Lach L, Laeger T, Lattke J, Leponce M, Lessard JP, Longino J, Lucky A, Luke SH, Majer J, McGlynn TP, Menke S, Mezger D, Mori A, Moses J, Munyai TC, Pacheco R, Paknia O, Pearce-Duvet J, Pfeiffer M, Philpott SM, Resasco J, Retana J, Silva RR, Sorger MD, Souza J, Suarez A, Tista M, Vasconcelos HL, Vonshak M, Weiser MD, Yates M, Parr CL.

Ecology. 2017 Mar;98(3):883-884. doi: 10.1002/ecy.1682.

5.

Utilizing online resources for taxonomy: a cybercatalog of Afrotropical apiocerid flies (Insecta: Diptera: Apioceridae).

Dikow T, Agosti D.

Biodivers Data J. 2015 Oct 6;(3):e5707. doi: 10.3897/BDJ.3.e5707. eCollection 2015.

6.

Integrating and visualizing primary data from prospective and legacy taxonomic literature.

Miller JA, Agosti D, Penev L, Sautter G, Georgiev T, Catapano T, Patterson D, King D, Pereira S, Vos RA, Sierra S.

Biodivers Data J. 2015 May 12;(3):e5063. doi: 10.3897/BDJ.3.e5063. eCollection 2015.

7.

Community next steps for making globally unique identifiers work for biocollections data.

Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD.

Zookeys. 2015 Apr 6;(494):133-54. doi: 10.3897/zookeys.494.9352. eCollection 2015.

8.

Open exchange of scientific knowledge and European copyright: The case of biodiversity information.

Egloff W, Patterson DJ, Agosti D, Hagedorn G.

Zookeys. 2014 Jun 6;(414):109-35. doi: 10.3897/zookeys.414.7717. eCollection 2014.

9.

Scientific names of organisms: attribution, rights, and licensing.

Patterson DJ, Egloff W, Agosti D, Eades D, Franz N, Hagedorn G, Rees JA, Remsen DP.

BMC Res Notes. 2014 Feb 4;7:79. doi: 10.1186/1756-0500-7-79.

10.

A decadal view of biodiversity informatics: challenges and priorities.

Hardisty A, Roberts D; Biodiversity Informatics Community, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N, Belbin L, Berendsohn W, Bertrand N, Caithness N, Campbell D, Cochrane G, Conruyt N, Culham A, Damgaard C, Davies N, Fady B, Faulwetter S, Feest A, Field D, Garnier E, Geser G, Gilbert J, Grosche, Grosser D, Hardisty A, Herbinet B, Hobern D, Jones A, de Jong Y, King D, Knapp S, Koivula H, Los W, Meyer C, Morris RA, Morrison N, Morse D, Obst M, Pafilis E, Page LM, Page R, Pape T, Parr C, Paton A, Patterson D, Paymal E, Penev L, Pollet M, Pyle R, von Raab-Straube E, Robert V, Roberts D, Robertson T, Rovellotti O, Saarenmaa H, Schalk P, Schaminee J, Schofield P, Sier A, Sierra S, Smith V, van Spronsen E, Thornton-Wood S, van Tienderen P, van Tol J, Tuama ÉÓ, Uetz P, Vaas L, Vignes Lebbe R, Vision T, Vu D, De Wever A, White R, Willis K, Young F.

BMC Ecol. 2013 Apr 15;13:16. doi: 10.1186/1472-6785-13-16. Review.

11.

Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal.

Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur TL, Mueller G, Dikow T, Helgen KM, Frank J, Agosti D, Roberts D, Penev L.

Biodivers Data J. 2013 Sep 16;(1):e995. doi: 10.3897/BDJ.1.e995. eCollection 2013. No abstract available.

12.

From taxonomic literature to cybertaxonomic content.

Miller J, Dikow T, Agosti D, Sautter G, Catapano T, Penev L, Zhang ZQ, Pentcheff D, Pyle R, Blum S, Parr C, Freeland C, Garnett T, Ford LS, Muller B, Smith L, Strader G, Georgiev T, Bénichou L.

BMC Biol. 2012 Oct 31;10:87. doi: 10.1186/1741-7007-10-87. No abstract available.

13.

Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group.

Moritz T, Krishnan S, Roberts D, Ingwersen P, Agosti D, Penev L, Cockerill M, Chavan V; Data Publishing Framework Task Group.

BMC Bioinformatics. 2011;12 Suppl 15:S1. doi: 10.1186/1471-2105-12-S15-S1. Epub 2011 Dec 15.

14.

Creative Commons licenses and the non-commercial condition: Implications for the re-use of biodiversity information.

Hagedorn G, Mietchen D, Morris RA, Agosti D, Penev L, Berendsohn WG, Hobern D.

Zookeys. 2011;(150):127-49. doi: 10.3897/zookeys.150.2189. Epub 2011 Nov 28.

15.

XML schemas and mark-up practices of taxonomic literature.

Penev L, Lyal CH, Weitzman A, Morse DR, King D, Sautter G, Georgiev T, Morris RA, Catapano T, Agosti D.

Zookeys. 2011;(150):89-116. doi: 10.3897/zookeys.150.2213. Epub 2011 Nov 28.

16.

Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID.

Penev L, Hagedorn G, Mietchen D, Georgiev T, Stoev P, Sautter G, Agosti D, Plank A, Balke M, Hendrich L, Erwin T.

Zookeys. 2011 Apr 14;(90):1-12. doi: 10.3897/zookeys.90.1369.

17.

Canopy and litter ant assemblages share similar climate-species density relationships.

Weiser MD, Sanders NJ, Agosti D, Andersen AN, Ellison AM, Fisher BL, Gibb H, Gotelli NJ, Gove AD, Gross K, Guénard B, Janda M, Kaspari M, Lessard JP, Longino JT, Majer JD, Menke SB, McGlynn TP, Parr CL, Philpott SM, Retana J, Suarez AV, Vasconcelos HL, Yanoviak SP, Dunn RR.

Biol Lett. 2010 Dec 23;6(6):769-72. doi: 10.1098/rsbl.2010.0151. Epub 2010 May 12.

18.

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys.

Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith VS.

Zookeys. 2010 Jun 30;(50):17-28. doi: 10.3897/zookeys.50.539.

19.

Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith VS, Brake I, Ryrcroft S, Scott B, Johnson NF, Morris RA, Sautter G, Chavan V, Robertson T, Remsen D, Stoev P, Parr C, Knapp S, Kress WJ, Thompson CF, Erwin T.

Zookeys. 2010 Jun 30;(50):1-16. doi: 10.3897/zookeys.50.538.

20.

Taxonomic information exchange and copyright: the Plazi approach.

Agosti D, Egloff W.

BMC Res Notes. 2009 Mar 30;2:53. doi: 10.1186/1756-0500-2-53.

21.

Climatic drivers of hemispheric asymmetry in global patterns of ant species richness.

Dunn RR, Agosti D, Andersen AN, Arnan X, Bruhl CA, Cerdá X, Ellison AM, Fisher BL, Fitzpatrick MC, Gibb H, Gotelli NJ, Gove AD, Guenard B, Janda M, Kaspari M, Laurent EJ, Lessard JP, Longino JT, Majer JD, Menke SB, McGlynn TP, Parr CL, Philpott SM, Pfeiffer M, Retana J, Suarez AV, Vasconcelos HL, Weiser MD, Sanders NJ.

Ecol Lett. 2009 Apr;12(4):324-33. doi: 10.1111/j.1461-0248.2009.01291.x.

PMID:
19292793
22.

Putting ant-acacia mutualisms to the fire.

Cochard R, Agosti D.

Science. 2008 Mar 28;319(5871):1759-61; author reply 1759-61. doi: 10.1126/science.319.5871.1759d. No abstract available.

PMID:
18369124
23.

Semi-automated XML markup of biosystematic legacy literature with the GoldenGATE editor.

Sautter G, Böhm K, Agosti D.

Pac Symp Biocomput. 2007:391-402.

24.

Biodiversity data are out of local taxonomists' reach.

Agosti D.

Nature. 2006 Jan 26;439(7075):392. No abstract available.

PMID:
16437089
25.

Switzerland's role as a hotspot of type specimens.

Agosti D, Linder P, Burckhardt D, Martinez S, Löbl I, Loizeau PA.

Nature. 2003 Feb 27;421(6926):889. No abstract available.

PMID:
12606969
26.

Taxonomists need better access to published data.

Agosti D, Johnson NF.

Nature. 2002 May 16;417(6886):222. No abstract available.

PMID:
12015570
27.

Dufour gland contents of ants of the Cataglyphis bicolor group.

Gökçen OA, Morgan ED, Dani FR, Agosti D, Wehner R.

J Chem Ecol. 2002 Jan;28(1):71-87.

PMID:
11868680

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