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Items: 1 to 50 of 81

1.

Temperature Dependence of Intramolecular Vibrational Bands in Small Water Clusters.

Samala NR, Agmon N.

J Phys Chem B. 2019 Nov 7;123(44):9428-9442. doi: 10.1021/acs.jpcb.9b07777. Epub 2019 Oct 24.

PMID:
31553613
2.

Hyperemesis gravidarum and adverse pregnancy outcomes.

Agmon N, Sade S, Pariente G, Rotem R, Weintraub AY.

Arch Gynecol Obstet. 2019 Aug;300(2):347-353. doi: 10.1007/s00404-019-05192-y. Epub 2019 May 16.

PMID:
31098820
3.

Author Correction: A scalable peptide-GPCR language for engineering multicellular communication.

Billerbeck S, Brisbois J, Agmon N, Jimenez M, Temple J, Shen M, Boeke JD, Cornish VW.

Nat Commun. 2019 Jan 29;10(1):554. doi: 10.1038/s41467-019-08545-y.

4.

Ionic radii of hydrated sodium cation from QTAIM.

Fifen JJ, Agmon N.

J Chem Phys. 2019 Jan 21;150(3):034304. doi: 10.1063/1.5020150.

PMID:
30660160
5.

A scalable peptide-GPCR language for engineering multicellular communication.

Billerbeck S, Brisbois J, Agmon N, Jimenez M, Temple J, Shen M, Boeke JD, Cornish VW.

Nat Commun. 2018 Nov 29;9(1):5057. doi: 10.1038/s41467-018-07610-2. Erratum in: Nat Commun. 2019 Jan 29;10(1):554.

6.

Depletion of potassium and sodium in mantles of Mars, Moon and Vesta by core formation.

Steenstra ES, Agmon N, Berndt J, Klemme S, Matveev S, van Westrenen W.

Sci Rep. 2018 May 4;8(1):7053. doi: 10.1038/s41598-018-25505-6.

7.

Structure, spectroscopy, and dynamics of the phenol-(water)2 cluster at low and high temperatures.

Samala NR, Agmon N.

J Chem Phys. 2017 Dec 21;147(23):234307. doi: 10.1063/1.5006055.

PMID:
29272937
8.

Rapid and Efficient CRISPR/Cas9-Based Mating-Type Switching of Saccharomyces cerevisiae.

Xie ZX, Mitchell LA, Liu HM, Li BZ, Liu D, Agmon N, Wu Y, Li X, Zhou X, Li B, Xiao WH, Ding MZ, Wang Y, Yuan YJ, Boeke JD.

G3 (Bethesda). 2018 Jan 4;8(1):173-183. doi: 10.1534/g3.117.300347.

9.

Isoelectronic Theory for Cationic Radii.

Agmon N.

J Am Chem Soc. 2017 Oct 25;139(42):15068-15073. doi: 10.1021/jacs.7b07882. Epub 2017 Oct 16.

PMID:
28971669
10.

Molecular Robots Obeying Asimov's Three Laws of Robotics.

Kaminka GA, Spokoini-Stern R, Amir Y, Agmon N, Bachelet I.

Artif Life. 2017 Summer;23(3):343-350. doi: 10.1162/ARTL_a_00235.

PMID:
28786728
11.

Origin of proton affinity to membrane/water interfaces.

Weichselbaum E, Österbauer M, Knyazev DG, Batishchev OV, Akimov SA, Hai Nguyen T, Zhang C, Knör G, Agmon N, Carloni P, Pohl P.

Sci Rep. 2017 Jul 3;7(1):4553. doi: 10.1038/s41598-017-04675-9.

12.

Reinvestigation of the Infrared Spectrum of the Gas-Phase Protonated Water Tetramer.

Wang H, Agmon N.

J Phys Chem A. 2017 Apr 27;121(16):3056-3070. doi: 10.1021/acs.jpca.7b01856. Epub 2017 Apr 14.

PMID:
28351145
13.

Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae.

Agmon N, Tang Z, Yang K, Sutter B, Ikushima S, Cai Y, Caravelli K, Martin JA, Sun X, Choi WJ, Zhang A, Stracquadanio G, Hao H, Tu BP, Fenyo D, Bader JS, Boeke JD.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1470-E1479. doi: 10.1073/pnas.1621250114. Epub 2017 Feb 7.

14.

Proton Wire Dynamics in the Green Fluorescent Protein.

Shinobu A, Agmon N.

J Chem Theory Comput. 2017 Jan 10;13(1):353-369. doi: 10.1021/acs.jctc.6b00939. Epub 2016 Dec 8.

PMID:
28068768
15.

Reversible Excited-State Proton Geminate Recombination: Revisited.

Simkovitch R, Pines D, Agmon N, Pines E, Huppert D.

J Phys Chem B. 2016 Dec 15;120(49):12615-12632. Epub 2016 Dec 1.

PMID:
27973823
16.

Protons and Hydroxide Ions in Aqueous Systems.

Agmon N, Bakker HJ, Campen RK, Henchman RH, Pohl P, Roke S, Thämer M, Hassanali A.

Chem Rev. 2016 Jul 13;116(13):7642-72. doi: 10.1021/acs.chemrev.5b00736. Epub 2016 Jun 17. Review.

PMID:
27314430
17.

Complete Assignment of the Infrared Spectrum of the Gas-Phase Protonated Ammonia Dimer.

Wang H, Agmon N.

J Phys Chem A. 2016 May 19;120(19):3117-35. doi: 10.1021/acs.jpca.5b11062. Epub 2016 May 9.

PMID:
27124704
18.

Structure and Spectroscopy of Hydrated Sodium Ions at Different Temperatures and the Cluster Stability Rules.

Fifen JJ, Agmon N.

J Chem Theory Comput. 2016 Apr 12;12(4):1656-73. doi: 10.1021/acs.jctc.6b00038. Epub 2016 Mar 21.

PMID:
26913993
19.

Infrared spectroscopy: The acid test for water structure.

Agmon N.

Nat Chem. 2016 Mar;8(3):206-7. doi: 10.1038/nchem.2465. No abstract available.

PMID:
26892549
20.

Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae.

Mitchell LA, Chuang J, Agmon N, Khunsriraksakul C, Phillips NA, Cai Y, Truong DM, Veerakumar A, Wang Y, Mayorga M, Blomquist P, Sadda P, Trueheart J, Boeke JD.

Nucleic Acids Res. 2015 Jul 27;43(13):6620-30. doi: 10.1093/nar/gkv466. Epub 2015 May 8.

21.

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units.

Agmon N, Mitchell LA, Cai Y, Ikushima S, Chuang J, Zheng A, Choi WJ, Martin JA, Caravelli K, Stracquadanio G, Boeke JD.

ACS Synth Biol. 2015 Jul 17;4(7):853-9. doi: 10.1021/sb500372z. Epub 2015 Mar 23.

PMID:
25756291
22.

The hole in the barrel: water exchange at the GFP chromophore.

Shinobu A, Agmon N.

J Phys Chem B. 2015 Feb 26;119(8):3464-78. doi: 10.1021/jp5127255. Epub 2015 Feb 13.

PMID:
25635627
23.

Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes.

Cai Y, Agmon N, Choi WJ, Ubide A, Stracquadanio G, Caravelli K, Hao H, Bader JS, Boeke JD.

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):1803-8. doi: 10.1073/pnas.1424704112. Epub 2015 Jan 26.

24.

Protonated water dimer on benzene: standing Eigen or crouching Zundel?

Wang H, Agmon N.

J Phys Chem B. 2015 Feb 12;119(6):2658-67. doi: 10.1021/jp509004j. Epub 2015 Jan 9.

PMID:
25517176
25.

Network analysis of proton transfer in liquid water.

Shevchuk R, Agmon N, Rao F.

J Chem Phys. 2014 Jun 28;140(24):244502. doi: 10.1063/1.4884455.

PMID:
24985649
26.

Total synthesis of a functional designer eukaryotic chromosome.

Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, Martin JA, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJ, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CY, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WC, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WR, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, Chandrasegaran S.

Science. 2014 Apr 4;344(6179):55-8. doi: 10.1126/science.1249252. Epub 2014 Mar 27. Erratum in: Science. 2014 May 23;344(6186):816.

27.

Deciphering the infrared spectrum of the protonated water pentamer and the hybrid Eigen-Zundel cation.

Kulig W, Agmon N.

Phys Chem Chem Phys. 2014 Mar 14;16(10):4933-41. doi: 10.1039/c3cp54029d.

PMID:
24477279
28.

Statistics of language morphology change: from biconsonantal hunters to triconsonantal farmers.

Agmon N, Bloch Y.

PLoS One. 2013 Dec 19;8(12):e83780. doi: 10.1371/journal.pone.0083780. eCollection 2013.

29.

Both Zundel and Eigen isomers contribute to the IR spectrum of the gas-phase H9O4+ cluster.

Kulig W, Agmon N.

J Phys Chem B. 2014 Jan 9;118(1):278-86. doi: 10.1021/jp410446d. Epub 2013 Dec 27.

PMID:
24344636
30.

On the origin of proton mobility suppression in aqueous solutions of amphiphiles.

Xu J, Yamashita T, Agmon N, Voth GA.

J Phys Chem B. 2013 Dec 12;117(49):15426-35. doi: 10.1021/jp4051726. Epub 2013 Jul 22.

PMID:
23822723
31.

Effect of nuclear architecture on the efficiency of double-strand break repair.

Agmon N, Liefshitz B, Zimmer C, Fabre E, Kupiec M.

Nat Cell Biol. 2013 Jun;15(6):694-9. doi: 10.1038/ncb2745. Epub 2013 May 5.

PMID:
23644470
32.

A 'clusters-in-liquid' method for calculating infrared spectra identifies the proton-transfer mode in acidic aqueous solutions.

Kulig W, Agmon N.

Nat Chem. 2013 Jan;5(1):29-35. doi: 10.1038/nchem.1503. Epub 2012 Nov 25.

PMID:
23247174
33.

Green's function for reversible geminate reaction with volume reactivity.

Khokhlova SS, Agmon N.

J Chem Phys. 2012 Nov 14;137(18):184103. doi: 10.1063/1.4764357.

PMID:
23163360
34.

Bioenergetics: Proton fronts on membranes.

Agmon N, Gutman M.

Nat Chem. 2011 Oct 24;3(11):840-2. doi: 10.1038/nchem.1184. No abstract available.

PMID:
22024877
35.

Liquid water: from symmetry distortions to diffusive motion.

Agmon N.

Acc Chem Res. 2012 Jan 17;45(1):63-73. doi: 10.1021/ar200076s. Epub 2011 Oct 6.

PMID:
21978022
36.

The residence probability: single molecule fluorescence correlation spectroscopy and reversible geminate recombination.

Agmon N.

Phys Chem Chem Phys. 2011 Oct 6;13(37):16548-57. doi: 10.1039/c1cp20907h. Epub 2011 Aug 22.

PMID:
21860864
37.

The role of Holliday junction resolvases in the repair of spontaneous and induced DNA damage.

Agmon N, Yovel M, Harari Y, Liefshitz B, Kupiec M.

Nucleic Acids Res. 2011 Sep 1;39(16):7009-19. doi: 10.1093/nar/gkr277. Epub 2011 May 23.

38.

Single molecule diffusion and the solution of the spherically symmetric residence time equation.

Agmon N.

J Phys Chem A. 2011 Jun 16;115(23):5838-46. doi: 10.1021/jp1099877. Epub 2011 Feb 9.

PMID:
21306174
39.

Visualizing proton antenna in a high-resolution green fluorescent protein structure.

Shinobu A, Palm GJ, Schierbeek AJ, Agmon N.

J Am Chem Soc. 2010 Aug 18;132(32):11093-102. doi: 10.1021/ja1010652.

PMID:
20698675
40.

Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells.

Cohen S, Agmon N, Sobol O, Segal D.

Mob DNA. 2010 Mar 8;1(1):11. doi: 10.1186/1759-8753-1-11.

41.

Proteasome nuclear activity affects chromosome stability by controlling the turnover of Mms22, a protein important for DNA repair.

Ben-Aroya S, Agmon N, Yuen K, Kwok T, McManus K, Kupiec M, Hieter P.

PLoS Genet. 2010 Feb 19;6(2):e1000852. doi: 10.1371/journal.pgen.1000852.

42.

Kinetics of proton migration in liquid water.

Chen H, Voth GA, Agmon N.

J Phys Chem B. 2010 Jan 14;114(1):333-9. doi: 10.1021/jp908126a.

PMID:
19961199
43.

Analysis of repair mechanism choice during homologous recombination.

Agmon N, Pur S, Liefshitz B, Kupiec M.

Nucleic Acids Res. 2009 Aug;37(15):5081-92. doi: 10.1093/nar/gkp495. Epub 2009 Jun 23.

44.

Distance-dependent proton transfer along water wires connecting acid-base pairs.

Cox MJ, Timmer RL, Bakker HJ, Park S, Agmon N.

J Phys Chem A. 2009 Jun 18;113(24):6599-606. doi: 10.1021/jp9004778.

PMID:
19449829
45.

Mapping proton wires in proteins: carbonic anhydrase and GFP chromophore biosynthesis.

Shinobu A, Agmon N.

J Phys Chem A. 2009 Jul 2;113(26):7253-66. doi: 10.1021/jp8102047.

PMID:
19388648
46.

Multisite reversible geminate reaction.

Park S, Agmon N.

J Chem Phys. 2009 Feb 21;130(7):074507. doi: 10.1063/1.3074305.

PMID:
19239302
47.

Reversible geminate recombination of hydrogen-bonded water molecule pair.

Markovitch O, Agmon N.

J Chem Phys. 2008 Aug 28;129(8):084505. doi: 10.1063/1.2968608.

PMID:
19044833
48.

Concentration profiles near an activated enzyme.

Park S, Agmon N.

J Phys Chem B. 2008 Sep 25;112(38):12104-14. doi: 10.1021/jp803873p. Epub 2008 Aug 29.

PMID:
18759406
49.

Special pair dance and partner selection: elementary steps in proton transport in liquid water.

Markovitch O, Chen H, Izvekov S, Paesani F, Voth GA, Agmon N.

J Phys Chem B. 2008 Aug 7;112(31):9456-66. doi: 10.1021/jp804018y. Epub 2008 Jul 16.

PMID:
18630857
50.

Theory and simulation of diffusion-controlled Michaelis-Menten kinetics for a static enzyme in solution.

Park S, Agmon N.

J Phys Chem B. 2008 May 15;112(19):5977-87. doi: 10.1021/jp075941d. Epub 2008 Jan 26.

PMID:
18220382

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