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Items: 18

1.

An Atlas of Vagal Sensory Neurons and Their Molecular Specialization.

Kupari J, Häring M, Agirre E, Castelo-Branco G, Ernfors P.

Cell Rep. 2019 May 21;27(8):2508-2523.e4. doi: 10.1016/j.celrep.2019.04.096.

2.

SETDB1-dependent heterochromatin stimulates alternative lengthening of telomeres.

Gauchier M, Kan S, Barral A, Sauzet S, Agirre E, Bonnell E, Saksouk N, Barth TK, Ide S, Urbach S, Wellinger RJ, Luco RF, Imhof A, Déjardin J.

Sci Adv. 2019 May 8;5(5):eaav3673. doi: 10.1126/sciadv.aav3673. eCollection 2019 May.

3.

Bilateral interstitial pneumonia after recent trip to Peru.

Agirre E, Osorio A, Casas Fernández de Tejerina JM, Rodríguez-Arrondo F, Salicio Bermejo Y.

Enferm Infecc Microbiol Clin. 2019 Apr 24. pii: S0213-005X(19)30150-8. doi: 10.1016/j.eimc.2019.03.002. [Epub ahead of print] English, Spanish. No abstract available.

PMID:
31029485
4.

PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination.

Falcão AM, Meijer M, Scaglione A, Rinwa P, Agirre E, Liang J, Larsen SC, Heskol A, Frawley R, Klingener M, Varas-Godoy M, Raposo AASF, Ernfors P, Castro DS, Nielsen ML, Casaccia P, Castelo-Branco G.

Cell Rep. 2019 Apr 23;27(4):1090-1102.e10. doi: 10.1016/j.celrep.2019.03.108.

5.

Altered human oligodendrocyte heterogeneity in multiple sclerosis.

Jäkel S, Agirre E, Mendanha Falcão A, van Bruggen D, Lee KW, Knuesel I, Malhotra D, Ffrench-Constant C, Williams A, Castelo-Branco G.

Nature. 2019 Feb;566(7745):543-547. doi: 10.1038/s41586-019-0903-2. Epub 2019 Jan 23.

6.

Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis.

Falcão AM, van Bruggen D, Marques S, Meijer M, Jäkel S, Agirre E, Samudyata, Floriddia EM, Vanichkina DP, Ffrench-Constant C, Williams A, Guerreiro-Cacais AO, Castelo-Branco G.

Nat Med. 2018 Dec;24(12):1837-1844. doi: 10.1038/s41591-018-0236-y. Epub 2018 Nov 12.

7.

Single-cell transcriptomic analysis of oligodendrocyte lineage cells.

van Bruggen D, Agirre E, Castelo-Branco G.

Curr Opin Neurobiol. 2017 Dec;47:168-175. doi: 10.1016/j.conb.2017.10.005. Epub 2017 Nov 7. Review.

8.

A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins.

Agirre E, Bellora N, Alló M, Pagès A, Bertucci P, Kornblihtt AR, Eyras E.

BMC Biol. 2015 May 2;13:31. doi: 10.1186/s12915-015-0141-5.

9.

A lncRNA regulates alternative splicing via establishment of a splicing-specific chromatin signature.

Gonzalez I, Munita R, Agirre E, Dittmer TA, Gysling K, Misteli T, Luco RF.

Nat Struct Mol Biol. 2015 May;22(5):370-6. doi: 10.1038/nsmb.3005. Epub 2015 Apr 6.

10.

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.

Alló M, Agirre E, Bessonov S, Bertucci P, Gómez Acuña L, Buggiano V, Bellora N, Singh B, Petrillo E, Blaustein M, Miñana B, Dujardin G, Pozzi B, Pelisch F, Bechara E, Agafonov DE, Srebrow A, Lührmann R, Valcárcel J, Eyras E, Kornblihtt AR.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15622-9. doi: 10.1073/pnas.1416858111. Epub 2014 Oct 13.

11.

Improving search over Electronic Health Records using UMLS-based query expansion through random walks.

Martinez D, Otegi A, Soroa A, Agirre E.

J Biomed Inform. 2014 Oct;51:100-6. doi: 10.1016/j.jbi.2014.04.013. Epub 2014 Apr 21.

12.

Methods to study splicing from high-throughput RNA sequencing data.

Alamancos GP, Agirre E, Eyras E.

Methods Mol Biol. 2014;1126:357-97. doi: 10.1007/978-1-62703-980-2_26.

PMID:
24549677
13.

Exploiting domain information for Word Sense Disambiguation of medical documents.

Stevenson M, Agirre E, Soroa A.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):235-40. doi: 10.1136/amiajnl-2011-000415. Epub 2011 Sep 7.

14.

Databases and resources for human small non-coding RNAs.

Agirre E, Eyras E.

Hum Genomics. 2011 Mar;5(3):192-9. Review.

15.

Chromatin and alternative splicing.

Alló M, Schor IE, Muñoz MJ, de la Mata M, Agirre E, Valcárcel J, Eyras E, Kornblihtt AR.

Cold Spring Harb Symp Quant Biol. 2010;75:103-11. doi: 10.1101/sqb.2010.75.023. Epub 2011 Feb 2.

PMID:
21289049
16.

Graph-based word sense disambiguation of biomedical documents.

Agirre E, Soroa A, Stevenson M.

Bioinformatics. 2010 Nov 15;26(22):2889-96. doi: 10.1093/bioinformatics/btq555. Epub 2010 Oct 7.

PMID:
20934991
17.

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

Alló M, Buggiano V, Fededa JP, Petrillo E, Schor I, de la Mata M, Agirre E, Plass M, Eyras E, Elela SA, Klinck R, Chabot B, Kornblihtt AR.

Nat Struct Mol Biol. 2009 Jul;16(7):717-24. doi: 10.1038/nsmb.1620. Epub 2009 Jun 21.

PMID:
19543290
18.

Co-evolution of the branch site and SR proteins in eukaryotes.

Plass M, Agirre E, Reyes D, Camara F, Eyras E.

Trends Genet. 2008 Dec;24(12):590-4. doi: 10.1016/j.tig.2008.10.004. Epub 2008 Nov 5.

PMID:
18992956

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