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Items: 18

1.

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C.

Muller H, Scolari VF, Agier N, Piazza A, Thierry A, Mercy G, Descorps-Declere S, Lazar-Stefanita L, Espeli O, Llorente B, Fischer G, Mozziconacci J, Koszul R.

Mol Syst Biol. 2018 Jul 16;14(7):e8293. doi: 10.15252/msb.20188293.

2.

The evolution of the temporal program of genome replication.

Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino-Lagomarsino M, Fischer G.

Nat Commun. 2018 Jun 6;9(1):2199. doi: 10.1038/s41467-018-04628-4.

3.

Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G.

Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116. Epub 2016 May 31.

4.

A Versatile Procedure to Generate Genome-Wide Spatiotemporal Program of Replication in Yeast Species.

Agier N, Fischer G.

Methods Mol Biol. 2016;1361:247-64. doi: 10.1007/978-1-4939-3079-1_14.

PMID:
26483026
5.

An integrated "omics" approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase.

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Quilleré I, Tercé-Laforgue T, Dargel-Graffin C, Hirel B.

BMC Genomics. 2014 Nov 20;15:1005. doi: 10.1186/1471-2164-15-1005.

6.

Total synthesis of a functional designer eukaryotic chromosome.

Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, Martin JA, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJ, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CY, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WC, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WR, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, Chandrasegaran S.

Science. 2014 Apr 4;344(6179):55-8. doi: 10.1126/science.1249252. Epub 2014 Mar 27. Erratum in: Science. 2014 May 23;344(6186):816.

7.

The spatiotemporal program of replication in the genome of Lachancea kluyveri.

Agier N, Romano OM, Touzain F, Cosentino Lagomarsino M, Fischer G.

Genome Biol Evol. 2013;5(2):370-88. doi: 10.1093/gbe/evt014.

8.

A head and neck cancer tumor response-specific gene signature for cisplatin, 5-fluorouracil induction chemotherapy fails with added taxanes.

Tomkiewicz C, Hans S, Mucchielli MH, Agier N, Delacroix H, Marisa L, Brasnu D, Aggerbeck LP, Badoual C, Barouki R, Aggerbeck M.

PLoS One. 2012;7(10):e47170. doi: 10.1371/journal.pone.0047170. Epub 2012 Oct 9.

9.

The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize.

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Armengaud P, Quilleré I, Cañas R, Tercet-Laforgue T, Hirel B.

J Exp Bot. 2012 Sep;63(14):5017-33. doi: 10.1093/jxb/ers186.

PMID:
22936829
10.

The mutational profile of the yeast genome is shaped by replication.

Agier N, Fischer G.

Mol Biol Evol. 2012 Mar;29(3):905-13. doi: 10.1093/molbev/msr280. Epub 2011 Nov 22.

PMID:
22114361
11.

Functional study of genes essential for autogamy and nuclear reorganization in Paramecium.

Nowak JK, Gromadka R, Juszczuk M, Jerka-Dziadosz M, Maliszewska K, Mucchielli MH, Gout JF, Arnaiz O, Agier N, Tang T, Aggerbeck LP, Cohen J, Delacroix H, Sperling L, Herbert CJ, Zagulski M, Bétermier M.

Eukaryot Cell. 2011 Mar;10(3):363-72. doi: 10.1128/EC.00258-10. Epub 2011 Jan 21.

12.

Differentiation of symbiotic cells and endosymbionts in Medicago truncatula nodulation are coupled to two transcriptome-switches.

Maunoury N, Redondo-Nieto M, Bourcy M, Van de Velde W, Alunni B, Laporte P, Durand P, Agier N, Marisa L, Vaubert D, Delacroix H, Duc G, Ratet P, Aggerbeck L, Kondorosi E, Mergaert P.

PLoS One. 2010 Mar 4;5(3):e9519. doi: 10.1371/journal.pone.0009519.

13.

Assessing the impact of transgenerational epigenetic variation on complex traits.

Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, Bulski A, Albuisson J, Heredia F, Audigier P, Bouchez D, Dillmann C, Guerche P, Hospital F, Colot V.

PLoS Genet. 2009 Jun;5(6):e1000530. doi: 10.1371/journal.pgen.1000530. Epub 2009 Jun 26.

14.

DYRK1A interacts with the REST/NRSF-SWI/SNF chromatin remodelling complex to deregulate gene clusters involved in the neuronal phenotypic traits of Down syndrome.

Lepagnol-Bestel AM, Zvara A, Maussion G, Quignon F, Ngimbous B, Ramoz N, Imbeaud S, Loe-Mie Y, Benihoud K, Agier N, Salin PA, Cardona A, Khung-Savatovsky S, Kallunki P, Delabar JM, Puskas LG, Delacroix H, Aggerbeck L, Delezoide AL, Delattre O, Gorwood P, Moalic JM, Simonneau M.

Hum Mol Genet. 2009 Apr 15;18(8):1405-14. doi: 10.1093/hmg/ddp047. Epub 2009 Feb 12.

PMID:
19218269
15.

Response of human renal tubular cells to cyclosporine and sirolimus: a toxicogenomic study.

Pallet N, Rabant M, Xu-Dubois YC, Lecorre D, Mucchielli MH, Imbeaud S, Agier N, Hertig A, Thervet E, Legendre C, Beaune P, Anglicheau D.

Toxicol Appl Pharmacol. 2008 Jun 1;229(2):184-96. doi: 10.1016/j.taap.2008.01.019. Epub 2008 Feb 1.

PMID:
18331748
16.

Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment.

Tang T, François N, Glatigny A, Agier N, Mucchielli MH, Aggerbeck L, Delacroix H.

Bioinformatics. 2007 Oct 15;23(20):2686-91. Epub 2007 Aug 12.

PMID:
17698492
17.

Epigenetic natural variation in Arabidopsis thaliana.

Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA.

PLoS Biol. 2007 Jul;5(7):e174. Epub 2007 Jun 19.

18.

Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp.

Matsunaga F, Glatigny A, Mucchielli-Giorgi MH, Agier N, Delacroix H, Marisa L, Durosay P, Ishino Y, Aggerbeck L, Forterre P.

Nucleic Acids Res. 2007;35(10):3214-22. Epub 2007 Apr 22.

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