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Items: 45

1.

Universe's Worth of Electrons to Probe Long-Range Interactions of High-Energy Astrophysical Neutrinos.

Bustamante M, Agarwalla SK.

Phys Rev Lett. 2019 Feb 15;122(6):061103. doi: 10.1103/PhysRevLett.122.061103.

PMID:
30822075
2.

Hydrophobicity of graphene as a driving force for inhibiting biofilm formation of pathogenic bacteria and fungi.

Agarwalla SV, Ellepola K, Costa MCFD, Fechine GJM, Morin JLP, Castro Neto AH, Seneviratne CJ, Rosa V.

Dent Mater. 2019 Mar;35(3):403-413. doi: 10.1016/j.dental.2018.09.016. Epub 2019 Jan 21.

PMID:
30679015
3.

Ultra-Bright Rhodamines with Sulfobutylether-β-Cyclodextrin: A Viable Supramolecular Dye Laser in Aqueous Medium.

Khurana R, Agarwalla S, Sridhar G, Barooah N, Bhasikuttan AC, Mohanty J.

Chemphyschem. 2018 Sep 18;19(18):2349-2356. doi: 10.1002/cphc.201800373. Epub 2018 Jun 27.

PMID:
29947036
4.

An Adolescent with Extensive Cutaneous Sarcoidosis without Lung Involvement.

Mishra P, Mishra S, Agarwalla SK, Mohanty N, Das RR.

Indian J Pediatr. 2017 Jun;84(6):479-480. doi: 10.1007/s12098-017-2309-1. Epub 2017 Feb 18. No abstract available.

PMID:
28213883
5.

A Rare Association of Pentalogy of Fallot with Situs Inversus Totalis Complicated by Brain Abscess in an Adolescent-Case Report.

Basheer M, Agarwalla SK.

J Clin Diagn Res. 2016 Dec;10(12):SD06-SD07. doi: 10.7860/JCDR/2016/23712.9098. Epub 2016 Dec 1.

6.

Octant of θ_{23} in Danger with a Light Sterile Neutrino.

Agarwalla SK, Chatterjee SS, Palazzo A.

Phys Rev Lett. 2017 Jan 20;118(3):031804. doi: 10.1103/PhysRevLett.118.031804. Epub 2017 Jan 20.

PMID:
28157374
7.

Reliability, failure probability, and strength of resin-based materials for CAD/CAM restorations.

Lim K, Yap AU, Agarwalla SV, Tan KB, Rosa V.

J Appl Oral Sci. 2016 Sep-Oct;24(5):447-452. doi: 10.1590/1678-775720150561.

8.

Clinical Profile of Dengue Fever in Children: A Study from Southern Odisha, India.

Mishra S, Ramanathan R, Agarwalla SK.

Scientifica (Cairo). 2016;2016:6391594. doi: 10.1155/2016/6391594. Epub 2016 Apr 24.

9.

Robinow Syndrome: A Rare Diagnosis.

Mishra S, Agarwalla SK, Pradhan S.

J Clin Diagn Res. 2015 Dec;9(12):SD04-5. doi: 10.7860/JCDR/2015/15078.6949. Epub 2015 Dec 1.

10.

Machine learning based sample extraction for automatic speech recognition using dialectal Assamese speech.

Agarwalla S, Sarma KK.

Neural Netw. 2016 Jun;78:97-111. doi: 10.1016/j.neunet.2015.12.010. Epub 2015 Dec 30.

PMID:
26783204
11.

Case reports on atypical presentation of Plasmodium falciparum malaria in pediatric patients.

Mishra S, Agarwalla SK, Nanda AK.

J Nat Sci Biol Med. 2015 Jul-Dec;6(2):434-6. doi: 10.4103/0976-9668.160028.

12.

Rubinstein-Taybi syndrome with agenesis of corpus callosum.

Mishra S, Agarwalla SK, Potpalle DR, Dash NN.

J Pediatr Neurosci. 2015 Apr-Jun;10(2):175-7. doi: 10.4103/1817-1745.159207.

13.

Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS.

Venable JD, Steckler C, Ou W, Grünewald J, Agarwalla S, Brock A.

Anal Chem. 2015 Aug 4;87(15):7540-4. doi: 10.1021/acs.analchem.5b01410. Epub 2015 Jul 22.

14.

Identification of novel ROR2 gene mutations in Indian children with Robinow syndrome.

Tamhankar PM, Vasudevan L, Kondurkar S, Yashaswini K, Agarwalla SK, Nair M, Ramkumar TV, Chaubal N, Chennuri VS.

J Clin Res Pediatr Endocrinol. 2014;6(2):79-83. doi: 10.4274/Jcrpe.1233.

15.

Structural and functional characterization of BaiA, an enzyme involved in secondary bile acid synthesis in human gut microbe.

Bhowmik S, Jones DH, Chiu HP, Park IH, Chiu HJ, Axelrod HL, Farr CL, Tien HJ, Agarwalla S, Lesley SA.

Proteins. 2014 Feb;82(2):216-29. doi: 10.1002/prot.24353. Epub 2013 Oct 17.

16.

Subzero temperature chromatography for reduced back-exchange and improved dynamic range in amide hydrogen/deuterium exchange mass spectrometry.

Venable JD, Okach L, Agarwalla S, Brock A.

Anal Chem. 2012 Nov 6;84(21):9601-8. doi: 10.1021/ac302488h. Epub 2012 Oct 19.

17.

Analysis of temporal jitter in a copper vapor laser system.

Durga Praveen Kumar D, Gantayet LM, Singh S, Rawat AS, Rana P, Rajasree V, Agarwalla SK, Chakravarthy DP.

Rev Sci Instrum. 2012 Feb;83(2):025105. doi: 10.1063/1.3680581.

PMID:
22380123
18.

Overexpression of TRIB2 in human lung cancers contributes to tumorigenesis through downregulation of C/EBPα.

Grandinetti KB, Stevens TA, Ha S, Salamone RJ, Walker JR, Zhang J, Agarwalla S, Tenen DG, Peters EC, Reddy VA.

Oncogene. 2011 Jul 28;30(30):3328-35. doi: 10.1038/onc.2011.57. Epub 2011 Mar 14.

19.

A chemical genetic screen in Mycobacterium tuberculosis identifies carbon-source-dependent growth inhibitors devoid of in vivo efficacy.

Pethe K, Sequeira PC, Agarwalla S, Rhee K, Kuhen K, Phong WY, Patel V, Beer D, Walker JR, Duraiswamy J, Jiricek J, Keller TH, Chatterjee A, Tan MP, Ujjini M, Rao SP, Camacho L, Bifani P, Mak PA, Ma I, Barnes SW, Chen Z, Plouffe D, Thayalan P, Ng SH, Au M, Lee BH, Tan BH, Ravindran S, Nanjundappa M, Lin X, Goh A, Lakshminarayana SB, Shoen C, Cynamon M, Kreiswirth B, Dartois V, Peters EC, Glynne R, Brenner S, Dick T.

Nat Commun. 2010 Aug 24;1:57. doi: 10.1038/ncomms1060.

20.

Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 angstroms resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.

Xu Q, Saikatendu KS, Krishna SS, McMullan D, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Miller MD, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Schwarzenbacher R, van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2007 Nov 1;69(2):433-9. No abstract available.

PMID:
17654724
21.

Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 A resolution.

Zubieta C, Krishna SS, McMullan D, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, Deller M, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Nigoghossian E, Oommachen S, Reyes R, Rife CL, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2007 Sep 1;68(4):999-1005. No abstract available.

PMID:
17546672
22.

Experimental and computational assessment of conditionally essential genes in Escherichia coli.

Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BØ, Agarwalla S.

J Bacteriol. 2006 Dec;188(23):8259-71. Epub 2006 Sep 29.

23.

Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 A resolution.

Kosloff M, Han GW, Krishna SS, Schwarzenbacher R, Fasnacht M, Elsliger MA, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Feuerhelm J, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Johnson H, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Levin I, McMullan D, Miller MD, Morse AT, Moy K, Nigoghossian E, Okach L, Oommachen S, Page R, Paulsen J, Quijano K, Reyes R, Rife CL, Sims E, Spraggon G, Sridhar V, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2006 Nov 15;65(3):527-37.

PMID:
16988933
24.

Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 A resolution reveals a fold similar to the Ran-binding protein Mog1p.

Xu Q, Krishna SS, McMullan D, Schwarzenbacher R, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2006 Nov 15;65(3):777-82. No abstract available.

PMID:
16948158
25.

Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 A resolution reveals a new fold with a novel active site.

DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Agarwalla S, Brittain SM, Miller MD, Abdubek P, Ambing E, Axelrod HL, Canaves JM, Chiu HJ, Deacon AM, Duan L, Elsliger MA, Godzik A, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.

Proteins. 2006 Nov 15;65(3):771-6. No abstract available.

PMID:
16927339
26.

Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 A resolution.

Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Haugen J, Jin KK, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2006 Oct 1;65(1):249-54. No abstract available.

PMID:
16865708
27.

Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution.

Xu Q, Schwarzenbacher R, Krishna SS, McMullan D, Agarwalla S, Quijano K, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Elsliger MA, Grittini C, Grzechnik SK, DiDonato M, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Moy K, Nigoghossian E, Paulsen J, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2006 Aug 15;64(3):808-13. No abstract available.

PMID:
16783794
28.

Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution.

Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod H, Canaves JM, Chiu HJ, DiDonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2006 Sep 1;64(4):1083-90. No abstract available.

PMID:
16779835
29.

Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.

Jin KK, Krishna SS, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife C, Stevens RC, Spraggon G, van den Bedem H, Velasquez J, White A, Wolf G, Han GW, Xu Q, Hodgson KO, Wooley J, Wilson IA.

Proteins. 2006 Jun 1;63(4):1112-8. No abstract available.

PMID:
16544291
30.

Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution.

DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Chiu HJ, Deacon AM, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Moy K, Nigoghossian E, Okach L, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.

Proteins. 2006 Apr 1;63(1):256-60. No abstract available.

PMID:
16435371
31.

Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold.

Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Wilson IA.

Proteins. 2006 Jan 1;62(1):292-6. No abstract available.

PMID:
16287129
32.

Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 A resolution.

Jaroszewski L, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.

Proteins. 2005 Nov 15;61(3):669-73. No abstract available.

PMID:
16167343
33.
34.

Redox reactions of the iron-sulfur cluster in a ribosomal RNA methyltransferase, RumA: optical and EPR studies.

Agarwalla S, Stroud RM, Gaffney BJ.

J Biol Chem. 2004 Aug 13;279(33):34123-9. Epub 2004 Jun 4.

35.
36.

Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit.

Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12648-53. Epub 2003 Oct 17.

37.

Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.

Mathews II, Deacon AM, Canaves JM, McMullan D, Lesley SA, Agarwalla S, Kuhn P.

Structure. 2003 Jun;11(6):677-90.

38.

Characterization of the 23 S ribosomal RNA m5U1939 methyltransferase from Escherichia coli.

Agarwalla S, Kealey JT, Santi DV, Stroud RM.

J Biol Chem. 2002 Mar 15;277(11):8835-40. Epub 2002 Jan 4.

39.

A novel dCMP methylase by engineering thymidylate synthase.

Agarwalla S, LaPorte S, Liu L, Finer-Moore J, Stroud RM, Santi DV.

Biochemistry. 1997 Dec 16;36(50):15909-17.

PMID:
9398324
40.
41.

Covalent tethering of the dimer interface annuls aggregation in thymidylate synthase.

Agarwalla S, Gokhale RS, Santi DV, Balaram P.

Protein Sci. 1996 Feb;5(2):270-7.

42.

Conformation of the flexible bent helix of Leu1-zervamicin in crystal C and a possible gating action for ion passage.

Karle IL, Flippen-Anderson JL, Agarwalla S, Balaram P.

Biopolymers. 1994 Jun;34(6):721-35.

PMID:
8025219
43.

Thermal stabilization of thymidylate synthase by engineering two disulfide bridges across the dimer interface.

Gokhale RS, Agarwalla S, Francis VS, Santi DV, Balaram P.

J Mol Biol. 1994 Jan 7;235(1):89-94.

PMID:
7904654
44.

Zervamicins, a structurally characterised peptide model for membrane ion channels.

Agarwalla S, Mellor IR, Sansom MS, Karle IL, Flippen-Anderson JL, Uma K, Krishna K, Sukumar M, Balaram P.

Biochem Biophys Res Commun. 1992 Jul 15;186(1):8-15.

PMID:
1378732
45.

Crystal structure of [Leu1]zervamicin, a membrane ion-channel peptide: implications for gating mechanisms.

Karle IL, Flippen-Anderson JL, Agarwalla S, Balaram P.

Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5307-11.

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