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Items: 1 to 50 of 55

1.

The M-band: The underestimated part of the sarcomere.

Lange S, Pinotsis N, Agarkova I, Ehler E.

Biochim Biophys Acta Mol Cell Res. 2019 Feb 7. pii: S0167-4889(18)30342-2. doi: 10.1016/j.bbamcr.2019.02.003. [Epub ahead of print] Review.

2.

The N-glycan structures of the antigenic variants of chlorovirus PBCV-1 major capsid protein help to identify the virus-encoded glycosyltransferases.

Speciale I, Duncan GA, Unione L, Agarkova IV, Garozzo D, Jimenez-Barbero J, Lin S, Lowary TL, Molinaro A, Noel E, Laugieri ME, Tonetti MG, Van Etten JL, De Castro C.

J Biol Chem. 2019 Apr 5;294(14):5688-5699. doi: 10.1074/jbc.RA118.007182. Epub 2019 Feb 8.

PMID:
30737276
3.

Near-atomic structure of a giant virus.

Fang Q, Zhu D, Agarkova I, Adhikari J, Klose T, Liu Y, Chen Z, Sun Y, Gross ML, Van Etten JL, Zhang X, Rossmann MG.

Nat Commun. 2019 Jan 23;10(1):388. doi: 10.1038/s41467-019-08319-6.

4.

Chloroviruses Lure Hosts through Long-Distance Chemical Signaling.

Dunigan DD, Al-Sammak M, Al-Ameeli Z, Agarkova IV, DeLong JP, Van Etten JL.

J Virol. 2019 Mar 21;93(7). pii: e01688-18. doi: 10.1128/JVI.01688-18. Print 2019 Apr 1.

5.

Chloroviruses Have a Sweet Tooth.

Van Etten JL, Agarkova I, Dunigan DD, Tonetti M, De Castro C, Duncan GA.

Viruses. 2017 Apr 22;9(4). pii: E88. doi: 10.3390/v9040088. Review.

6.

Structure of the N-glycans from the chlorovirus NE-JV-1.

Speciale I, Agarkova I, Duncan GA, Van Etten JL, De Castro C.

Antonie Van Leeuwenhoek. 2017 Nov;110(11):1391-1399. doi: 10.1007/s10482-017-0861-3. Epub 2017 Mar 22.

PMID:
28331984
7.

A novel three-dimensional heterotypic spheroid model for the assessment of the activity of cancer immunotherapy agents.

Herter S, Morra L, Schlenker R, Sulcova J, Fahrni L, Waldhauer I, Lehmann S, Reisländer T, Agarkova I, Kelm JM, Klein C, Umana P, Bacac M.

Cancer Immunol Immunother. 2017 Jan;66(1):129-140. doi: 10.1007/s00262-016-1927-1. Epub 2016 Nov 17.

8.

Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains.

Quispe CF, Esmael A, Sonderman O, McQuinn M, Agarkova I, Battah M, Duncan GA, Dunigan DD, Smith TPL, De Castro C, Speciale I, Ma F, Van Etten JL.

Virology. 2017 Jan;500:103-113. doi: 10.1016/j.virol.2016.10.013. Epub 2016 Oct 27.

9.

Genome Analysis and Development of a Multiplex TaqMan Real-Time PCR for Specific Identification and Detection of Clavibacter michiganensis subsp. nebraskensis.

Tambong JT, Xu R, Daayf F, Brière S, Bilodeau GJ, Tropiano R, Hartke A, Reid LM, Cott M, Cote T, Agarkova I.

Phytopathology. 2016 Dec;106(12):1473-1485. Epub 2016 Oct 4.

10.

Effect of Chlorovirus ATCV-1 infection on behavior of C57Bl/6 mice.

Petro MS, Agarkova IV, Petro TM.

J Neuroimmunol. 2016 Aug 15;297:46-55. doi: 10.1016/j.jneuroim.2016.05.009. Epub 2016 May 11.

PMID:
27397075
11.

N-Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent.

De Castro C, Speciale I, Duncan G, Dunigan DD, Agarkova I, Lanzetta R, Sturiale L, Palmigiano A, Garozzo D, Molinaro A, Tonetti M, Van Etten JL.

Angew Chem Int Ed Engl. 2016 Jan 11;55(2):654-8. doi: 10.1002/anie.201509150. Epub 2015 Nov 19.

12.

Response of Mammalian Macrophages to Challenge with the Chlorovirus Acanthocystis turfacea Chlorella Virus 1.

Petro TM, Agarkova IV, Zhou Y, Yolken RH, Van Etten JL, Dunigan DD.

J Virol. 2015 Dec;89(23):12096-107. doi: 10.1128/JVI.01254-15. Epub 2015 Sep 23.

13.

Reply to Kjartansdóttir et al.: Chlorovirus ATCV-1 findings not explained by contamination.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E927. doi: 10.1073/pnas.1424665112. Epub 2015 Feb 5. No abstract available.

14.

Development and Characterization of a Scaffold-Free 3D Spheroid Model of Induced Pluripotent Stem Cell-Derived Human Cardiomyocytes.

Beauchamp P, Moritz W, Kelm JM, Ullrich ND, Agarkova I, Anson BD, Suter TM, Zuppinger C.

Tissue Eng Part C Methods. 2015 Aug;21(8):852-61. doi: 10.1089/ten.TEC.2014.0376. Epub 2015 Mar 16.

PMID:
25654582
15.

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16106-11. doi: 10.1073/pnas.1418895111. Epub 2014 Oct 27.

16.

Dynamic attachment of Chlorovirus PBCV-1 to Chlorella variabilis.

Agarkova I, Hertel B, Zhang X, Lane L, Tchourbanov A, Dunigan DD, Thiel G, Rossmann MG, Van Etten JL.

Virology. 2014 Oct;466-467:95-102. doi: 10.1016/j.virol.2014.07.002. Epub 2014 Sep 18.

17.

3D cell culture systems modeling tumor growth determinants in cancer target discovery.

Thoma CR, Zimmermann M, Agarkova I, Kelm JM, Krek W.

Adv Drug Deliv Rev. 2014 Apr;69-70:29-41. doi: 10.1016/j.addr.2014.03.001. Epub 2014 Mar 15. Review.

PMID:
24636868
18.

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1.

Blanc G, Mozar M, Agarkova IV, Gurnon JR, Yanai-Balser G, Rowe JM, Xia Y, Riethoven JJ, Dunigan DD, Van Etten JL.

PLoS One. 2014 Mar 7;9(3):e90989. doi: 10.1371/journal.pone.0090989. eCollection 2014.

19.

Cardiomyocyte growth and sarcomerogenesis at the intercalated disc.

Wilson AJ, Schoenauer R, Ehler E, Agarkova I, Bennett PM.

Cell Mol Life Sci. 2014 Jan;71(1):165-81. doi: 10.1007/s00018-013-1374-5. Epub 2013 May 26.

20.

Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.

Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G.

BMC Genomics. 2013 Mar 8;14:158. doi: 10.1186/1471-2164-14-158.

21.

Multi-cell type human liver microtissues for hepatotoxicity testing.

Messner S, Agarkova I, Moritz W, Kelm JM.

Arch Toxicol. 2013 Jan;87(1):209-13. doi: 10.1007/s00204-012-0968-2. Epub 2012 Nov 11.

22.

Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus.

Dunigan DD, Cerny RL, Bauman AT, Roach JC, Lane LC, Agarkova IV, Wulser K, Yanai-Balser GM, Gurnon JR, Vitek JC, Kronschnabel BJ, Jeanniard A, Blanc G, Upton C, Duncan GA, McClung OW, Ma F, Van Etten JL.

J Virol. 2012 Aug;86(16):8821-34. doi: 10.1128/JVI.00907-12. Epub 2012 Jun 13.

23.

Genetic diversity among Curtobacterium flaccumfaciens pv. flaccumfaciens populations in the American high plains.

Agarkova IV, Lambrecht PA, Vidaver AK, Harveson RM.

Can J Microbiol. 2012 Jun;58(6):788-801. doi: 10.1139/w2012-052. Epub 2012 May 29.

PMID:
22642843
24.

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.

Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S, Pangilinan J, Pröschold T, Salamov A, Schmutz J, Weeks D, Yamada T, Lomsadze A, Borodovsky M, Claverie JM, Grigoriev IV, Van Etten JL.

Genome Biol. 2012 May 25;13(5):R39. doi: 10.1186/gb-2012-13-5-r39.

25.

3D microtissue formation of undifferentiated bone marrow mesenchymal stem cells leads to elevated apoptosis.

Kelm JM, Breitbach M, Fischer G, Odermatt B, Agarkova I, Fleischmann BK, Hoerstrup SP.

Tissue Eng Part A. 2012 Apr;18(7-8):692-702. doi: 10.1089/ten.TEA.2011.0281. Epub 2011 Dec 13.

26.

Engineering of living autologous human umbilical cord cell-based septal occluder membranes using composite PGA-P4HB matrices.

Weber B, Schoenauer R, Papadopulos F, Modregger P, Peter S, Stampanoni M, Mauri A, Mazza E, Gorelik J, Agarkova I, Frese L, Breymann C, Kretschmar O, Hoerstrup SP.

Biomaterials. 2011 Dec;32(36):9630-41. doi: 10.1016/j.biomaterials.2011.07.070. Epub 2011 Oct 5.

PMID:
21978890
27.

Genetic diversity and population structure of Clavibacter michiganensis subsp. nebraskensis.

Agarkova IV, Lambrecht PA, Vidaver AK.

Can J Microbiol. 2011 May;57(5):366-74. doi: 10.1139/W11-016. Epub 2011 Apr 21.

PMID:
21510777
28.

Injectable living marrow stromal cell-based autologous tissue engineered heart valves: first experiences with a one-step intervention in primates.

Weber B, Scherman J, Emmert MY, Gruenenfelder J, Verbeek R, Bracher M, Black M, Kortsmit J, Franz T, Schoenauer R, Baumgartner L, Brokopp C, Agarkova I, Wolint P, Zund G, Falk V, Zilla P, Hoerstrup SP.

Eur Heart J. 2011 Nov;32(22):2830-40. doi: 10.1093/eurheartj/ehr059. Epub 2011 Mar 17.

29.

[Age and gender features of tobacco smoking].

Babanov SA, Agarkova IA, Gaĭlis PV.

Adv Gerontol. 2010;23(3):357-63. Russian.

PMID:
21137205
30.

EH-myomesin splice isoform is a novel marker for dilated cardiomyopathy.

Schoenauer R, Emmert MY, Felley A, Ehler E, Brokopp C, Weber B, Nemir M, Faggian GG, Pedrazzini T, Falk V, Hoerstrup SP, Agarkova I.

Basic Res Cardiol. 2011 Mar;106(2):233-47. doi: 10.1007/s00395-010-0131-2. Epub 2010 Nov 11.

31.

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.

Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL.

Plant Cell. 2010 Sep;22(9):2943-55. doi: 10.1105/tpc.110.076406. Epub 2010 Sep 17.

32.

Upregulation of transmembrane endothelial junction proteins in human cerebral cavernous malformations.

Burkhardt JK, Schmidt D, Schoenauer R, Brokopp C, Agarkova I, Bozinov O, Bertalanffy H, Hoerstrup SP.

Neurosurg Focus. 2010 Sep;29(3):E3. doi: 10.3171/2010.6.FOCUS10125.

33.

Effects of small pulsed nanocurrents on cell viability in vitro and in vivo: implications for biomedical electrodes.

Gabi M, Bullen ME, Agarkova I, Schmidt D, Schoenauer R, Brokopp C, Emmert MY, Larmagnac A, Sannomiya T, Weber B, Wilhelm MJ, Vörös J, Hoerstrup SP.

Biomaterials. 2010 Nov;31(33):8666-73. doi: 10.1016/j.biomaterials.2010.07.092. Epub 2010 Aug 30.

34.

Stabilised beta-catenin in postnatal ventricular myocardium leads to dilated cardiomyopathy and premature death.

Hirschy A, Croquelois A, Perriard E, Schoenauer R, Agarkova I, Hoerstrup SP, Taketo MM, Pedrazzini T, Perriard JC, Ehler E.

Basic Res Cardiol. 2010 Sep;105(5):597-608. doi: 10.1007/s00395-010-0101-8. Epub 2010 Apr 8.

35.

Microarray analysis of Paramecium bursaria chlorella virus 1 transcription.

Yanai-Balser GM, Duncan GA, Eudy JD, Wang D, Li X, Agarkova IV, Dunigan DD, Van Etten JL.

J Virol. 2010 Jan;84(1):532-42. doi: 10.1128/JVI.01698-09.

36.

Reclassification of subspecies of Acidovorax avenae as A. Avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al., 1978) comb. nov., and proposal of A. oryzae sp. nov.

Schaad NW, Postnikova E, Sechler A, Claflin LE, Vidaver AK, Jones JB, Agarkova I, Ignatov A, Dickstein E, Ramundo BA.

Syst Appl Microbiol. 2008 Dec;31(6-8):434-46. doi: 10.1016/j.syapm.2008.09.003. Epub 2008 Nov 6.

PMID:
18993005
37.

Genetic Characterization and Diversity of Rathayibacter toxicus.

Agarkova IV, Vidaver AK, Postnikova EN, Riley IT, Schaad NW.

Phytopathology. 2006 Nov;96(11):1270-7. doi: 10.1094/PHYTO-96-1270.

38.

Genetic Diversity in Populations of Xanthomonas campestris pv. campestris in Cruciferous Weeds in Central Coastal California.

Ignatov A, Sechler A, Schuenzel EL, Agarkova I, Oliver B, Vidaver AK, Schaad NW.

Phytopathology. 2007 Jul;97(7):803-12. doi: 10.1094/PHYTO-97-7-0803.

39.

Chlorovirus-mediated membrane depolarization of Chlorella alters secondary active transport of solutes.

Agarkova I, Dunigan D, Gurnon J, Greiner T, Barres J, Thiel G, Van Etten JL.

J Virol. 2008 Dec;82(24):12181-90. doi: 10.1128/JVI.01687-08. Epub 2008 Oct 8.

40.

Myomesin 3, a novel structural component of the M-band in striated muscle.

Schoenauer R, Lange S, Hirschy A, Ehler E, Perriard JC, Agarkova I.

J Mol Biol. 2008 Feb 15;376(2):338-51. doi: 10.1016/j.jmb.2007.11.048. Epub 2007 Nov 22.

PMID:
18177667
41.

Identification and characterization of layer-specific differences in extraocular muscle m-bands.

Wiesen MH, Bogdanovich S, Agarkova I, Perriard JC, Khurana TS.

Invest Ophthalmol Vis Sci. 2007 Mar;48(3):1119-27.

PMID:
17325154
42.

Nkx2.5 cell-autonomous gene function is required for the postnatal formation of the peripheral ventricular conduction system.

Meysen S, Marger L, Hewett KW, Jarry-Guichard T, Agarkova I, Chauvin JP, Perriard JC, Izumo S, Gourdie RG, Mangoni ME, Nargeot J, Gros D, Miquerol L.

Dev Biol. 2007 Mar 15;303(2):740-53. Epub 2006 Dec 23.

43.

Emended classification of xanthomonad pathogens on citrus.

Schaad NW, Postnikova E, Lacy G, Sechler A, Agarkova I, Stromberg PE, Stromberg VK, Vidaver AK.

Syst Appl Microbiol. 2006 Dec;29(8):690-5. No abstract available.

PMID:
17183629
44.

Virion-associated restriction endonucleases of chloroviruses.

Agarkova IV, Dunigan DD, Van Etten JL.

J Virol. 2006 Aug;80(16):8114-23.

45.

The sarcomeric M-band during development and in disease.

Lange S, Agarkova I, Perriard JC, Ehler E.

J Muscle Res Cell Motil. 2005;26(6-8):375-9.

PMID:
16470337
47.

The M-band: an elastic web that crosslinks thick filaments in the center of the sarcomere.

Agarkova I, Perriard JC.

Trends Cell Biol. 2005 Sep;15(9):477-85. Review.

PMID:
16061384
48.

Myomesin is a molecular spring with adaptable elasticity.

Schoenauer R, Bertoncini P, Machaidze G, Aebi U, Perriard JC, Hegner M, Agarkova I.

J Mol Biol. 2005 Jun 3;349(2):367-79. Epub 2005 Apr 7.

PMID:
15890201
49.

Study of the mechanical properties of myomesin proteins using dynamic force spectroscopy.

Bertoncini P, Schoenauer R, Agarkova I, Hegner M, Perriard JC, Güntherodt HJ.

J Mol Biol. 2005 May 20;348(5):1127-37. Epub 2005 Apr 7.

PMID:
15854649
50.

Bacterial cell penetration by beta3-oligohomoarginines: indications for passive transfer through the lipid bilayer.

Geueke B, Namoto K, Agarkova I, Perriard JC, Kohler HP, Seebach D.

Chembiochem. 2005 Jun;6(6):982-5. No abstract available.

PMID:
15852334

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