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Items: 19

1.

Plasma N-glycans in colorectal cancer risk.

Doherty M, Theodoratou E, Walsh I, Adamczyk B, Stöckmann H, Agakov F, Timofeeva M, Trbojević-Akmačić I, Vučković F, Duffy F, McManus CA, Farrington SM, Dunlop MG, Perola M, Lauc G, Campbell H, Rudd PM.

Sci Rep. 2018 Jun 5;8(1):8655. doi: 10.1038/s41598-018-26805-7.

2.

Genome-wide association study of response to methotrexate in early rheumatoid arthritis patients.

Taylor JC, Bongartz T, Massey J, Mifsud B, Spiliopoulou A, Scott IC, Wang J, Morgan M, Plant D, Colombo M, Orchard P, Twigg S, McInnes IB, Porter D, Freeston JE, Nam JL, Cordell HJ, Isaacs JD, Strathdee JL, Arnett D, de Hair MJH, Tak PP, Aslibekyan S, van Vollenhoven RF, Padyukov L, Bridges SL, Pitzalis C, Cope AP, Verstappen SMM, Emery P, Barnes MR, Agakov F, McKeigue P, Mushiroda T, Kubo M, Weinshilboum R, Barton A, Morgan AW, Barrett JH; MATURA; and PAMERA; Consortia.

Pharmacogenomics J. 2018 Jul;18(4):528-538. doi: 10.1038/s41397-018-0025-5. Epub 2018 May 25. Review.

PMID:
29795407
3.

Apolipoprotein CIII and N-terminal prohormone b-type natriuretic peptide as independent predictors for cardiovascular disease in type 2 diabetes.

Colombo M, Looker HC, Farran B, Agakov F, Brosnan MJ, Welsh P, Sattar N, Livingstone S, Durrington PN, Betteridge DJ, McKeigue PM, Colhoun HM.

Atherosclerosis. 2018 Jul;274:182-190. doi: 10.1016/j.atherosclerosis.2018.05.014. Epub 2018 May 25.

4.

N-Glycan Profile and Kidney Disease in Type 1 Diabetes.

Bermingham ML, Colombo M, McGurnaghan SJ, Blackbourn LAK, Vučković F, Pučić Baković M, Trbojević-Akmačić I, Lauc G, Agakov F, Agakova AS, Hayward C, Klarić L, Palmer CNA, Petrie JR, Chalmers J, Collier A, Green F, Lindsay RS, Macrury S, McKnight JA, Patrick AW, Thekkepat S, Gornik O, McKeigue PM, Colhoun HM; SDRN Type 1 Bioresource Investigators.

Diabetes Care. 2018 Jan;41(1):79-87. doi: 10.2337/dc17-1042. Epub 2017 Nov 16.

PMID:
29146600
5.

IgG glycan patterns are associated with type 2 diabetes in independent European populations.

Lemmers RFH, Vilaj M, Urda D, Agakov F, Šimurina M, Klaric L, Rudan I, Campbell H, Hayward C, Wilson JF, Lieverse AG, Gornik O, Sijbrands EJG, Lauc G, van Hoek M.

Biochim Biophys Acta Gen Subj. 2017 Sep;1861(9):2240-2249. doi: 10.1016/j.bbagen.2017.06.020. Epub 2017 Jun 28.

PMID:
28668296
6.

Automated pathway and reaction prediction facilitates in silico identification of unknown metabolites in human cohort studies.

Quell JD, Römisch-Margl W, Colombo M, Krumsiek J, Evans AM, Mohney R, Salomaa V, de Faire U, Groop LC, Agakov F, Looker HC, McKeigue P, Colhoun HM, Kastenmüller G.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Dec 15;1071:58-67. doi: 10.1016/j.jchromb.2017.04.002. Epub 2017 Apr 4.

PMID:
28479069
7.

GeneImp: Fast Imputation to Large Reference Panels Using Genotype Likelihoods from Ultralow Coverage Sequencing.

Spiliopoulou A, Colombo M, Orchard P, Agakov F, McKeigue P.

Genetics. 2017 May;206(1):91-104. doi: 10.1534/genetics.117.200063. Epub 2017 Mar 27.

8.

Automated Integration of a UPLC Glycomic Profile.

Agakova A, Vučković F, Klarić L, Lauc G, Agakov F.

Methods Mol Biol. 2017;1503:217-233.

PMID:
27743370
9.

Glycosylation of plasma IgG in colorectal cancer prognosis.

Theodoratou E, Thaçi K, Agakov F, Timofeeva MN, Štambuk J, Pučić-Baković M, Vučković F, Orchard P, Agakova A, Din FV, Brown E, Rudd PM, Farrington SM, Dunlop MG, Campbell H, Lauc G.

Sci Rep. 2016 Jun 15;6:28098. doi: 10.1038/srep28098.

10.

Biomarkers of rapid chronic kidney disease progression in type 2 diabetes.

Looker HC, Colombo M, Hess S, Brosnan MJ, Farran B, Dalton RN, Wong MC, Turner C, Palmer CN, Nogoceke E, Groop L, Salomaa V, Dunger DB, Agakov F, McKeigue PM, Colhoun HM; SUMMIT Investigators.

Kidney Int. 2015 Oct;88(4):888-96. doi: 10.1038/ki.2015.199. Epub 2015 Jul 22.

PMID:
26200946
11.

Application of high-dimensional feature selection: evaluation for genomic prediction in man.

Bermingham ML, Pong-Wong R, Spiliopoulou A, Hayward C, Rudan I, Campbell H, Wright AF, Wilson JF, Agakov F, Navarro P, Haley CS.

Sci Rep. 2015 May 19;5:10312. doi: 10.1038/srep10312.

12.

Genomic prediction of complex human traits: relatedness, trait architecture and predictive meta-models.

Spiliopoulou A, Nagy R, Bermingham ML, Huffman JE, Hayward C, Vitart V, Rudan I, Campbell H, Wright AF, Wilson JF, Pong-Wong R, Agakov F, Navarro P, Haley CS.

Hum Mol Genet. 2015 Jul 15;24(14):4167-82. doi: 10.1093/hmg/ddv145. Epub 2015 Apr 26.

13.

Protein biomarkers for the prediction of cardiovascular disease in type 2 diabetes.

Looker HC, Colombo M, Agakov F, Zeller T, Groop L, Thorand B, Palmer CN, Hamsten A, de Faire U, Nogoceke E, Livingstone SJ, Salomaa V, Leander K, Barbarini N, Bellazzi R, van Zuydam N, McKeigue PM, Colhoun HM; SUMMIT Investigators.

Diabetologia. 2015 Jun;58(6):1363-71. doi: 10.1007/s00125-015-3535-6. Epub 2015 Mar 5.

PMID:
25740695
14.

Model selection approach suggests causal association between 25-hydroxyvitamin D and colorectal cancer.

Zgaga L, Agakov F, Theodoratou E, Farrington SM, Tenesa A, Dunlop MG, McKeigue P, Campbell H.

PLoS One. 2013 May 24;8(5):e63475. doi: 10.1371/journal.pone.0063475. Print 2013.

15.

Extending admixture mapping to nuclear pedigrees: application to sarcoidosis.

McKeigue PM, Colombo M, Agakov F, Datta I, Levin A, Favro D, Gray-Montgomery C, Iannuzzi MC, Rybicki BA.

Genet Epidemiol. 2013 Apr;37(3):256-66. doi: 10.1002/gepi.21710. Epub 2013 Jan 31.

16.

The association of dietary intake of purine-rich vegetables, sugar-sweetened beverages and dairy with plasma urate, in a cross-sectional study.

Zgaga L, Theodoratou E, Kyle J, Farrington SM, Agakov F, Tenesa A, Walker M, McNeill G, Wright AF, Rudan I, Dunlop MG, Campbell H.

PLoS One. 2012;7(6):e38123. doi: 10.1371/journal.pone.0038123. Epub 2012 Jun 6.

17.

Abundant pleiotropy in human complex diseases and traits.

Sivakumaran S, Agakov F, Theodoratou E, Prendergast JG, Zgaga L, Manolio T, Rudan I, McKeigue P, Wilson JF, Campbell H.

Am J Hum Genet. 2011 Nov 11;89(5):607-18. doi: 10.1016/j.ajhg.2011.10.004. Review.

18.

Diet, environmental factors, and lifestyle underlie the high prevalence of vitamin D deficiency in healthy adults in Scotland, and supplementation reduces the proportion that are severely deficient.

Zgaga L, Theodoratou E, Farrington SM, Agakov F, Tenesa A, Walker M, Knox S, Wallace AM, Cetnarskyj R, McNeill G, Kyle J, Porteous ME, Dunlop MG, Campbell H.

J Nutr. 2011 Aug;141(8):1535-42. doi: 10.3945/jn.111.140012. Epub 2011 Jun 22.

19.

Products of gaussians and probabilistic minor component analysis.

Williams CK, Agakov FV.

Neural Comput. 2002 May;14(5):1169-82.

PMID:
11972912

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