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Items: 8

1.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz091. doi: 10.1093/database/baz091. No abstract available.

2.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz041. doi: 10.1093/database/baz041. Erratum in: Database (Oxford). 2019 Jan 1;2019:.

3.

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken.

Bush SJ, Freem L, MacCallum AJ, O'Dell J, Wu C, Afrasiabi C, Psifidi A, Stevens MP, Smith J, Summers KM, Hume DA.

BMC Genomics. 2018 Aug 7;19(1):594. doi: 10.1186/s12864-018-4972-7.

4.

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.

Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C.

BMC Bioinformatics. 2018 Feb 1;19(1):30. doi: 10.1186/s12859-018-2041-5.

5.

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA.

PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997. eCollection 2017 Sep.

6.

High-performance web services for querying gene and variant annotation.

Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C.

Genome Biol. 2016 May 6;17(1):91. doi: 10.1186/s13059-016-0953-9.

7.

BioGPS: building your own mash-up of gene annotations and expression profiles.

Wu C, Jin X, Tsueng G, Afrasiabi C, Su AI.

Nucleic Acids Res. 2016 Jan 4;44(D1):D313-6. doi: 10.1093/nar/gkv1104. Epub 2015 Nov 17.

8.

The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification.

Afrasiabi C, Samad B, Dineen D, Meacham C, Sjölander K.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W242-8. doi: 10.1093/nar/gkt399. Epub 2013 May 18.

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