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Genetic characterization and pathogenesis of the first H9N2 low pathogenic avian influenza viruses isolated from chickens in Kenyan live bird markets.

Kariithi HM, Welch CN, Ferreira HL, Pusch EA, Ateya LO, Binepal YS, Apopo AA, Dulu TD, Afonso CL, Suarez DL.

Infect Genet Evol. 2019 Oct 18:104074. doi: 10.1016/j.meegid.2019.104074. [Epub ahead of print]


Chalcone derivatives targeting mitosis: synthesis, evaluation of antitumor activity and lipophilicity.

Pinto P, Machado CM, Moreira J, Almeida JDP, Silva PMA, Henriques AC, Soares JX, Salvador JAR, Afonso C, Pinto M, Bousbaa H, Cidade H.

Eur J Med Chem. 2019 Oct 3;184:111752. doi: 10.1016/j.ejmech.2019.111752. [Epub ahead of print]


Are hypohydrated older adults at increased risk of exhaustion?

Anjo I, Amaral TF, Afonso C, Borges N, Santos A, Moreira P, Padrão P.

J Hum Nutr Diet. 2019 Oct 2. doi: 10.1111/jhn.12702. [Epub ahead of print]


Effect of Thermomechanical Treatments on the Phases, Microstructure, Microhardness and Young's Modulus of Ti-25Ta-Zr Alloys.

Kuroda PAB, Quadros FF, Araújo RO, Afonso CRM, Grandini CR.

Materials (Basel). 2019 Sep 30;12(19). pii: E3210. doi: 10.3390/ma12193210.


Creating Diversity from Biomass: A Tandem Bio/Metal-Catalysis towards Chemoselective Synthesis of Densely Substituted Furans.

Ravasco JMJM, Monteiro CM, Siopa F, Trindade AF, Oble J, Poli G, Simeonov SP, Afonso CAM.

ChemSusChem. 2019 Oct 21;12(20):4629-4635. doi: 10.1002/cssc.201902051. Epub 2019 Sep 18.


Baked egg tolerance: is it possible to predict?

Vilar LK, Rolins Neto PR, Abdo MA, Cheik MFA, Afonso CPES, Segundo GRS.

J Pediatr (Rio J). 2019 Sep 9. pii: S0021-7557(19)30287-6. doi: 10.1016/j.jped.2019.08.002. [Epub ahead of print]


Rapid evolution of Mexican H7N3 highly pathogenic avian influenza viruses in poultry.

Youk S, Lee DH, Ferreira HL, Afonso CL, Absalon AE, Swayne DE, Suarez DL, Pantin-Jackwood MJ.

PLoS One. 2019 Sep 12;14(9):e0222457. doi: 10.1371/journal.pone.0222457. eCollection 2019.


A retrospective study of Newcastle disease in Kenya.

Apopo AA, Kariithi HM, Ateya LO, Binepal YS, Sirya JH, Dulu TD, Welch CN, Hernandez SM, Afonso CL.

Trop Anim Health Prod. 2019 Sep 10. doi: 10.1007/s11250-019-02059-x. [Epub ahead of print]


Tropism of Newcastle disease virus strains for chicken neurons, astrocytes, oligodendrocytes, and microglia.

Butt SL, Moura VMBD, Susta L, Miller PJ, Hutcheson JM, Cardenas-Garcia S, Brown CC, West FD, Afonso CL, Stanton JB.

BMC Vet Res. 2019 Sep 4;15(1):317. doi: 10.1186/s12917-019-2053-z.


Epitope Mapping by NMR of a Novel Anti-Aβ Antibody (STAB-MAb).

Posado-Fernández A, Afonso CF, Dória G, Flores O, Cabrita EJ.

Sci Rep. 2019 Aug 22;9(1):12241. doi: 10.1038/s41598-019-47626-2.


First Complete Genome Sequence of Currently Circulating Infectious Bronchitis Virus Strain DMV/1639 of the GI-17 Lineage.

Goraichuk IV, Kulkarni AB, Williams-Coplin D, Suarez DL, Afonso CL.

Microbiol Resour Announc. 2019 Aug 22;8(34). pii: e00840-19. doi: 10.1128/MRA.00840-19.


Elemental composition and bioaccessibility of farmed oysters (Crassostrea gigas) fed different ratios of dietary seaweed and microalgae during broodstock conditioning.

Cardoso C, Gomes R, Rato A, Joaquim S, Machado J, Gonçalves JF, Vaz-Pires P, Magnoni L, Matias D, Coelho I, Delgado I, Castanheira I, Matos J, Ozório R, Bandarra N, Afonso C.

Food Sci Nutr. 2019 Jun 28;7(8):2495-2504. doi: 10.1002/fsn3.1044. eCollection 2019 Aug.


Dealing with complexity: general discussion.

Afonso C, Barrow MP, Bell NGA, Davies AN, Duca D, Focsa C, Gauchotte-Lindsay C, Giusti P, Godfrey R, Goodacre R, Hawkes JA, Hertkorn N, Jansen JJ, Jones D, Kew W, Le Guennec A, Lubben A, Paša-Tolić L, Rodgers RP, Rüger CP, Schmitt-Kopplin P, Schoenmakers PJ, Sciarrone D, Summerfield S, Uhrín D, van Zelst FHM.

Faraday Discuss. 2019 Aug 15;218(0):138-156. doi: 10.1039/C9FD90055A. No abstract available.


Handgrip Strength and Its Association With Hydration Status and Urinary Sodium-to-Potassium Ratio in Older Adults.

Mendes J, Padrão P, Moreira P, Santos A, Borges N, Afonso C, Negrão R, Amaral TF.

J Am Coll Nutr. 2019 Aug 5:1-8. doi: 10.1080/07315724.2019.1633439. [Epub ahead of print]


Future challenges and new approaches: general discussion.

Afonso C, Chaux C, Davies AN, Delsuc MA, Fernandez Lima F, Gauchotte-Lindsay C, Giusti P, Goodacre R, Hawkes JA, Hertkorn N, Jansen JJ, Kew W, Kuhn S, Lubben A, McGill D, Nilsson M, Parkinson J, Rodgers RP, Rogers S, Schmitt-Kopplin P, Schoenmakers PJ, Shintu L, Soong R, Summerfield S, Surman A, Uhrín D, van der Hooft JJJ.

Faraday Discuss. 2019 Aug 15;218(0):505-523. doi: 10.1039/c9fd90046b. No abstract available.


Multi-residue method for enantioseparation of psychoactive substances and beta blockers by gas chromatography-mass spectrometry.

Gonçalves R, Ribeiro C, Cravo S, Cunha SC, Pereira JA, Fernandes JO, Afonso C, Tiritan ME.

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Sep 1;1125:121731. doi: 10.1016/j.jchromb.2019.121731. Epub 2019 Jul 24.


Data mining and visualisation: general discussion.

Afonso C, Barrow MP, Davies AN, Delsuc MA, Ebbels T, Fernandez-Lima F, Gauchotte-Lindsay C, Giusti P, Goodacre R, Hertkorn N, Jansen JJ, Jones D, Kew W, Kuhn S, Le Guennec A, Lubben A, Parkinson J, Paša-Tolić L, Rogers S, Rudd TR, Schoenmakers PJ, Sidebottom P, Summerfield S, Tinnevelt GH, Trifirò G, Trygg J, van der Hooft JJJ.

Faraday Discuss. 2019 Aug 15;218(0):354-371. doi: 10.1039/C9FD90044F. No abstract available.


High resolution techniques: general discussion.

Adair E, Afonso C, Bell NGA, Davies AN, Delsuc MA, Godfrey R, Goodacre R, Hawkes JA, Hertkorn N, Jones D, Lameiras P, Le Guennec A, Lubben A, Nilsson M, Paša-Tolić L, Richards J, Rodgers RP, Rüger CP, Schmitt-Kopplin P, Schoenmakers PJ, Sidebottom P, Staerk D, Summerfield S, Uhrín D, van Delft P, van der Hooft JJJ, van Zelst FHM, Zherebker A.

Faraday Discuss. 2019 Aug 15;218(0):247-267. doi: 10.1039/c9fd90045d. No abstract available.


The relationship between health self-perception, food consumption and nutritional status among Portuguese older adults.

Babo M, Poínhos R, Franchini B, Afonso C, Oliveira BMPM, Vaz de Almeida MD.

Eur J Clin Nutr. 2019 Jul 29. doi: 10.1038/s41430-019-0473-2. [Epub ahead of print]


Fatty Acid Profile of Pacific Oyster, Crassostrea gigas, Fed Different Ratios of Dietary Seaweed and Microalgae during Broodstock Conditioning.

Rato A, Pereira LF, Joaquim S, Gomes R, Afonso C, Cardoso C, Machado J, Gonçalves JFM, Vaz-Pires P, Magnoni LJ, Matias AM, Matias D, Bandarra NM, Ozório ROA.

Lipids. 2019 Sep;54(9):531-542. doi: 10.1002/lipd.12177. Epub 2019 Jul 17.


Enantioseparation, recognition mechanisms and binding of xanthones on human serum albumin by liquid chromatography.

do Carmo JP, Phyo YZ, Palmeira A, Tiritan ME, Afonso C, Kijjoa A, M Pinto MM, Fernandes C.

Bioanalysis. 2019 Jun;11(13):1255-1274. doi: 10.4155/bio-2019-0074. Epub 2019 Jul 12.


Virulent Newcastle disease viruses from chicken origin are more pathogenic and transmissible to chickens than viruses normally maintained in wild birds.

Ferreira HL, Taylor TL, Dimitrov KM, Sabra M, Afonso CL, Suarez DL.

Vet Microbiol. 2019 Aug;235:25-34. doi: 10.1016/j.vetmic.2019.06.004. Epub 2019 Jun 5.


First Complete Genome Sequence of a Subgenotype Vd Newcastle Disease Virus Isolate.

Goraichuk IV, Msoffe PLM, Chiwanga GH, Dimitrov KM, Afonso CL, Suarez DL.

Microbiol Resour Announc. 2019 Jul 3;8(27). pii: e00436-19. doi: 10.1128/MRA.00436-19.


Intravenous human immunoglobulin for the treatment of recurrent focal myositis.

Santos-Faria D, Sousa-Neves J, Leite Silva J, Ramos Rodrigues J, Azevedo S, Alcino S, Afonso C, Teixeira F.

Acta Reumatol Port. 2019 Jan-Mar;44(1):88-89.


Tocilizumab and rituximab have similar effectiveness and are both superior to a second tumour necrosis factor inhibitor in rheumatoid arthritis patients who discontinued a first TNF inhibitor.

Santos-Faria D, Tavares-Costa J, Eusébio M, Leite Silva J, Ramos Rodrigues J, Sousa-Neves J, Duarte AC, Lopes C, Valido A, Dinis J, Freitas J, Santiago M, Ferreira R, Ganhão S, Miranda L, Peixoto D, Teixeira F, Alcino S, Afonso C, Santos MJ.

Acta Reumatol Port. 2019 Apr-Jun;44(2):103-113.


Evaluation of air oxidized PAPC: A multi laboratory study by LC-MS/MS.

Ni Z, Sousa BC, Colombo S, Afonso CB, Melo T, Pitt AR, Spickett CM, Domingues P, Domingues MR, Fedorova M, Criscuolo A.

Free Radic Biol Med. 2019 Jun 15. pii: S0891-5849(19)30347-8. doi: 10.1016/j.freeradbiomed.2019.06.013. [Epub ahead of print]


Splenomesenteric bypass as revascularisation technique after iatrogenic injury of the superior mesenteric artery during radical nephrectomy: A case report.

Afonso C, Pereira J, Eufrásio P, Constantino J, Rebelo P.

Int J Surg Case Rep. 2019;60:34-37. doi: 10.1016/j.ijscr.2019.05.026. Epub 2019 May 30.


Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus.

Dimitrov KM, Abolnik C, Afonso CL, Albina E, Bahl J, Berg M, Briand FX, Brown IH, Choi KS, Chvala I, Diel DG, Durr PA, Ferreira HL, Fusaro A, Gil P, Goujgoulova GV, Grund C, Hicks JT, Joannis TM, Torchetti MK, Kolosov S, Lambrecht B, Lewis NS, Liu H, Liu H, McCullough S, Miller PJ, Monne I, Muller CP, Munir M, Reischak D, Sabra M, Samal SK, Servan de Almeida R, Shittu I, Snoeck CJ, Suarez DL, Van Borm S, Wang Z, Wong FYK.

Infect Genet Evol. 2019 Oct;74:103917. doi: 10.1016/j.meegid.2019.103917. Epub 2019 Jun 11.


Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion.

Hicks JT, Dimitrov KM, Afonso CL, Ramey AM, Bahl J.

BMC Evol Biol. 2019 May 24;19(1):108. doi: 10.1186/s12862-019-1431-2.


Genomic comparison of Newcastle disease viruses isolated in Nigeria between 2002 and 2015 reveals circulation of highly diverse genotypes and spillover into wild birds.

Welch CN, Shittu I, Abolnik C, Solomon P, Dimitrov KM, Taylor TL, Williams-Coplin D, Goraichuk IV, Meseko CA, Ibu JO, Gado DA, Joannis TM, Afonso CL.

Arch Virol. 2019 Aug;164(8):2031-2047. doi: 10.1007/s00705-019-04288-9. Epub 2019 May 23.


Structural analysis of heavy oil fractions after hydrodenitrogenation by high-resolution tandem mass spectrometry and ion mobility spectrometry.

Le Maître J, Hubert-Roux M, Paupy B, Marceau S, Rüger CP, Afonso C, Giusti P.

Faraday Discuss. 2019 Aug 15;218(0):417-430. doi: 10.1039/c8fd00239h.


A new optimization strategy for MALDI FTICR MS tissue analysis for untargeted metabolomics using experimental design and data modeling.

Ferey J, Marguet F, Laquerrière A, Marret S, Schmitz-Afonso I, Bekri S, Afonso C, Tebani A.

Anal Bioanal Chem. 2019 Jul;411(17):3891-3903. doi: 10.1007/s00216-019-01863-6. Epub 2019 May 15.


Enhanced phylogenetic resolution of Newcastle disease outbreaks using complete viral genome sequences from formalin-fixed paraffin-embedded tissue samples.

Butt SL, Dimitrov KM, Zhang J, Wajid A, Bibi T, Basharat A, Brown CC, Rehmani SF, Stanton JB, Afonso CL.

Virus Genes. 2019 Aug;55(4):502-512. doi: 10.1007/s11262-019-01669-9. Epub 2019 May 14.


Factors associated with sarcopenia and undernutrition in older adults.

Sousa-Santos AR, Afonso C, Borges N, Santos A, Padrão P, Moreira P, Amaral TF.

Nutr Diet. 2019 May 13. doi: 10.1111/1747-0080.12542. [Epub ahead of print]


Adherence to a Mediterranean Dietary Pattern status and associated factors among Portuguese older adults: Results from the Nutrition UP 65 cross-sectional study.

Teixeira B, Afonso C, Sousa AS, Guerra RS, Santos A, Borges N, Moreira P, Padrão P, Amaral TF.

Nutrition. 2019 Sep;65:91-96. doi: 10.1016/j.nut.2019.03.005. Epub 2019 Mar 23.


Structural Study of Analogues of Titan's Haze by Trapped Ion Mobility Coupled with a Fourier Transform Ion Cyclotron Mass Spectrometer.

Rüger CP, Maillard J, Le Maître J, Ridgeway M, Thompson CJ, Schmitz-Afonso I, Gautier T, Carrasco N, Park MA, Giusti P, Afonso C.

J Am Soc Mass Spectrom. 2019 Jul;30(7):1169-1173. doi: 10.1007/s13361-019-02205-7. Epub 2019 May 7.


Comparison of fish and oil supplements for a better understanding of the role of fat level and other food constituents in determining bioaccessibility.

Gomes R, Martins S, Afonso C, Bandarra NM, Cardoso C.

Food Sci Nutr. 2019 Mar 13;7(4):1179-1189. doi: 10.1002/fsn3.894. eCollection 2019 Apr.


Biodegradable antioxidant chitosan films useful as an anti-aging skin mask.

Afonso CR, Hirano RS, Gaspar AL, Chagas EGL, Carvalho RA, Silva FV, Leonardi GR, Lopes PS, Silva CF, Yoshida CMP.

Int J Biol Macromol. 2019 Jul 1;132:1262-1273. doi: 10.1016/j.ijbiomac.2019.04.052. Epub 2019 Apr 10.


Presence of Newcastle disease viruses of sub-genotypes Vc and VIn in backyard chickens and in apparently healthy wild birds from Mexico in 2017.

Ferreira HL, Taylor TL, Absalon AE, Dimitrov KM, Cortés-Espinosa DV, Butt SL, Marín-Cruz JL, Goraichuk IV, Volkening JD, Suarez DL, Afonso CL.

Virus Genes. 2019 Aug;55(4):479-489. doi: 10.1007/s11262-019-01663-1. Epub 2019 Apr 12.


Multiple myeloma in elderly patients-a Portuguese multicentric real-life study.

João C, Bergantim R, Neves M, Chacim S, Afonso C, Barradas J, Bernardo M, Coelho H, Esteves G, Fraga C, Geraldes C, Gonçalves C, Jorge A, Macedo A, Mendonça T, Moreira A, Roque A, Sarmento AB, Trigo F, Vitória H, Esteves S, Lúcio P.

Ann Hematol. 2019 Jul;98(7):1689-1701. doi: 10.1007/s00277-019-03640-y. Epub 2019 Apr 8.


Pathogenicity and transmission of virulent Newcastle disease virus from the 2018-2019 California outbreak and related viruses in young and adult chickens.

Dimitrov KM, Ferreira HL, Pantin-Jackwood MJ, Taylor TL, Goraichuk IV, Crossley BM, Killian ML, Bergeson NH, Torchetti MK, Afonso CL, Suarez DL.

Virology. 2019 May;531:203-218. doi: 10.1016/j.virol.2019.03.010. Epub 2019 Mar 22.


Epidemiology, control, and prevention of Newcastle disease in endemic regions: Latin America.

Absalón AE, Cortés-Espinosa DV, Lucio E, Miller PJ, Afonso CL.

Trop Anim Health Prod. 2019 Jun;51(5):1033-1048. doi: 10.1007/s11250-019-01843-z. Epub 2019 Mar 15. Review.


Progressive Myoclonic Epilepsy Type 8 Due to CERS1 Deficiency: A Novel Mutation with Prominent Ataxia.

Godeiro Junior CO, Vale TC, Afonso COM, Kok F, Pedroso JL, Barsottini OG.

Mov Disord Clin Pract. 2018 Mar 30;5(3):330-332. doi: 10.1002/mdc3.12610. eCollection 2018 May-Jun. No abstract available.


MinION sequencing to genotype US strains of infectious laryngotracheitis virus.

Spatz SJ, Garcia M, Riblet S, Ross TA, Volkening JD, Taylor TL, Kim T, Afonso CL.

Avian Pathol. 2019 Jun;48(3):255-269. doi: 10.1080/03079457.2019.1579298. Epub 2019 Mar 11.


Recommendations for reporting ion mobility Mass Spectrometry measurements.

Gabelica V, Shvartsburg AA, Afonso C, Barran P, Benesch JLP, Bleiholder C, Bowers MT, Bilbao A, Bush MF, Campbell JL, Campuzano IDG, Causon T, Clowers BH, Creaser CS, De Pauw E, Far J, Fernandez-Lima F, Fjeldsted JC, Giles K, Groessl M, Hogan CJ Jr, Hann S, Kim HI, Kurulugama RT, May JC, McLean JA, Pagel K, Richardson K, Ridgeway ME, Rosu F, Sobott F, Thalassinos K, Valentine SJ, Wyttenbach T.

Mass Spectrom Rev. 2019 May;38(3):291-320. doi: 10.1002/mas.21585. Epub 2019 Feb 1. Review.


Isolation and Potential Biological Applications of Haloaryl Secondary Metabolites from Macroalgae.

Jesus A, Correia-da-Silva M, Afonso C, Pinto M, Cidade H.

Mar Drugs. 2019 Jan 22;17(2). pii: E73. doi: 10.3390/md17020073. Review.


Analysis of Mucopolysaccharidosis Type VI through Integrative Functional Metabolomics.

Tebani A, Abily-Donval L, Schmitz-Afonso I, Piraud M, Ausseil J, Zerimech F, Pilon C, Pereira T, Marret S, Afonso C, Bekri S.

Int J Mol Sci. 2019 Jan 21;20(2). pii: E446. doi: 10.3390/ijms20020446.


Systemic sclerosis and myositis as a paraneoplastic syndrome secondary to multiple myeloma.

Santos-Faria D, Leite Silva J, Sousa-Neves J, Ramos Rodrigues J, Afonso C, Peixoto D.

Acta Reumatol Port. 2018 Oct-Dec;43(4):316-317.


The implications of following dietary advice regarding fish consumption frequency and meal size for the benefit (EPA + DHA and Se) versus risk (MeHg) assessment.

Afonso C, Bernardo I, Bandarra NM, Martins LL, Cardoso C.

Int J Food Sci Nutr. 2019 Aug;70(5):623-637. doi: 10.1080/09637486.2018.1551334. Epub 2019 Jan 14.


Structures, Activities and Drug-Likeness of Anti-Infective Xanthone Derivatives Isolated from the Marine Environment: A Review.

Loureiro DRP, Soares JX, Costa JC, Magalhães ÁF, Azevedo CMG, Pinto MMM, Afonso CMM.

Molecules. 2019 Jan 10;24(2). pii: E243. doi: 10.3390/molecules24020243. Review.

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