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Plasma Heating due to Cyclic Diffusion across a Separatrix.

Anderegg F, Affolter M, Dubin DHE, Driscoll CF.

Phys Rev Lett. 2019 Sep 6;123(10):105002. doi: 10.1103/PhysRevLett.123.105002.


Using Nanobodies to Study Protein Function in Developing Organisms.

Aguilar G, Matsuda S, Vigano MA, Affolter M.

Antibodies (Basel). 2019 Feb 12;8(1). pii: E16. doi: 10.3390/antib8010016. Review.


Longitudinal Changes of Mineral Concentrations in Preterm and Term Human Milk from Lactating Swiss Women.

Sabatier M, Garcia-Rodenas CL, Castro CA, Kastenmayer P, Vigo M, Dubascoux S, Andrey D, Nicolas M, Payot JR, Bordier V, Thakkar SK, Beauport L, Tolsa JF, Fumeaux CJF, Affolter M.

Nutrients. 2019 Aug 9;11(8). pii: E1855. doi: 10.3390/nu11081855.


Longitudinal Analysis of Macronutrient Composition in Preterm and Term Human Milk: A Prospective Cohort Study.

Fischer Fumeaux CJ, Garcia-Rodenas CL, De Castro CA, Courtet-Compondu MC, Thakkar SK, Beauport L, Tolsa JF, Affolter M.

Nutrients. 2019 Jul 4;11(7). pii: E1525. doi: 10.3390/nu11071525.


Reflections on the use of protein binders to study protein function in developmental biology.

Aguilar G, Vigano MA, Affolter M, Matsuda S.

Wiley Interdiscip Rev Dev Biol. 2019 Nov;8(6):e356. doi: 10.1002/wdev.356. Epub 2019 Jul 2. Review.


Human Milk Oligosaccharides in the Milk of Mothers Delivering Term versus Preterm Infants.

Austin S, De Castro CA, Sprenger N, Binia A, Affolter M, Garcia-Rodenas CL, Beauport L, Tolsa JF, Fischer Fumeaux CJ.

Nutrients. 2019 Jun 5;11(6). pii: E1282. doi: 10.3390/nu11061282.


Extensively hydrolysed infant formulas: Need for aligned definition of peptide size characteristics and standardisation of analytical methods.

Nutten S, Kuslys M, Maynard F, Affolter M, Heine RG, Levin ME, Blackhurst DM, Kirstein F, Kok D, Van der Watt GF, Marais AD.

S Afr Med J. 2018 Oct 26;108(11):887-888. doi: 10.7196/SAMJ.2018.v108i11.13616.


Temporal Progression of Fatty Acids in Preterm and Term Human Milk of Mothers from Switzerland.

Thakkar SK, De Castro CA, Beauport L, Tolsa JF, Fischer Fumeaux CJ, Affolter M, Giuffrida F.

Nutrients. 2019 Jan 8;11(1). pii: E112. doi: 10.3390/nu11010112.


Trapped Particle Effects in the Parametric Instability of Near-Acoustic Plasma Waves.

Affolter M, Anderegg F, Dubin DHE, Valentini F, Driscoll CF.

Phys Rev Lett. 2018 Dec 7;121(23):235004. doi: 10.1103/PhysRevLett.121.235004.


Analytical Method for Lactoferrin in Milk-Based Infant Formulas by Signature Peptide Quantification with Ultra-High Performance LC-Tandem Mass Spectrometry.

Ellingson DJ, Shippar JJ, Vennard TR, Moloney C, O'Connor D, O'Regan J, McMahon A, Affolter M.

J AOAC Int. 2019 May 1;102(3):915-925. doi: 10.5740/jaoacint.18-0226. Epub 2018 Dec 17.


Comparison of macronutrient content in human milk measured by mid-infrared human milk analyzer and reference methods.

Giuffrida F, Austin S, Cuany D, Sanchez-Bridge B, Longet K, Bertschy E, Sauser J, Thakkar SK, Lee LY, Affolter M.

J Perinatol. 2019 Mar;39(3):497-503. doi: 10.1038/s41372-018-0291-8. Epub 2018 Dec 14.


Correction: DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations (doi:10.1242/bio.036749).

Vigano MA, Bieli D, Schaefer JV, Jakob RP, Matsuda S, Maier T, Plückthun A, Affolter M.

Biol Open. 2018 Dec 13;7(12). pii: bio040832. doi: 10.1242/bio.040832. No abstract available.


Boundaries mediate long-distance interactions between enhancers and promoters in the Drosophila Bithorax complex.

Postika N, Metzler M, Affolter M, Müller M, Schedl P, Georgiev P, Kyrchanova O.

PLoS Genet. 2018 Dec 12;14(12):e1007702. doi: 10.1371/journal.pgen.1007702. eCollection 2018 Dec.


Wnt/β-catenin signaling regulates VE-cadherin-mediated anastomosis of brain capillaries by counteracting S1pr1 signaling.

Hübner K, Cabochette P, Diéguez-Hurtado R, Wiesner C, Wakayama Y, Grassme KS, Hubert M, Guenther S, Belting HG, Affolter M, Adams RH, Vanhollebeke B, Herzog W.

Nat Commun. 2018 Nov 19;9(1):4860. doi: 10.1038/s41467-018-07302-x.


Endothelial cell rearrangements during vascular patterning require PI3-kinase-mediated inhibition of actomyosin contractility.

Angulo-Urarte A, Casado P, Castillo SD, Kobialka P, Kotini MP, Figueiredo AM, Castel P, Rajeeve V, Milà-Guasch M, Millan J, Wiesner C, Serra H, Muixi L, Casanovas O, Viñals F, Affolter M, Gerhardt H, Huveneers S, Belting HG, Cutillas PR, Graupera M.

Nat Commun. 2018 Nov 16;9(1):4826. doi: 10.1038/s41467-018-07172-3.


Sprouting and anastomosis in the Drosophila trachea and the vertebrate vasculature: Similarities and differences in cell behaviour.

Kotini MP, Mäe MA, Belting HG, Betsholtz C, Affolter M.

Vascul Pharmacol. 2019 Jan;112:8-16. doi: 10.1016/j.vph.2018.11.002. Epub 2018 Nov 10. Review.


DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations.

Vigano MA, Bieli D, Schaefer JV, Jakob RP, Matsuda S, Maier T, Plückthun A, Affolter M.

Biol Open. 2018 Oct 29;7(11). pii: bio036749. doi: 10.1242/bio.036749. Erratum in: Biol Open. 2018 Dec 13;7(12):.


Junction-based lamellipodia drive endothelial cell rearrangements in vivo via a VE-cadherin-F-actin based oscillatory cell-cell interaction.

Paatero I, Sauteur L, Lee M, Lagendijk AK, Heutschi D, Wiesner C, Guzmán C, Bieli D, Hogan BM, Affolter M, Belting HG.

Nat Commun. 2018 Aug 31;9(1):3545. doi: 10.1038/s41467-018-05851-9.


Temporal changes of major protein concentrations in preterm and term human milk. A prospective cohort study.

Garcia-Rodenas CL, De Castro CA, Jenni R, Thakkar SK, Beauport L, Tolsa JF, Fischer-Fumeaux CJ, Affolter M.

Clin Nutr. 2019 Aug;38(4):1844-1852. doi: 10.1016/j.clnu.2018.07.016. Epub 2018 Jul 26.


Protein binders and their applications in developmental biology.

Harmansa S, Affolter M.

Development. 2018 Jan 26;145(2). pii: dev148874. doi: 10.1242/dev.148874. Review.


Spatio-temporally separated cortical flows and spindle geometry establish physical asymmetry in fly neural stem cells.

Roubinet C, Tsankova A, Pham TT, Monnard A, Caussinus E, Affolter M, Cabernard C.

Nat Commun. 2017 Nov 9;8(1):1383. doi: 10.1038/s41467-017-01391-w.


Live imaging molecular changes in junctional tension upon VE-cadherin in zebrafish.

Lagendijk AK, Gomez GA, Baek S, Hesselson D, Hughes WE, Paterson S, Conway DE, Belting HG, Affolter M, Smith KA, Schwartz MA, Yap AS, Hogan BM.

Nat Commun. 2017 Nov 10;8(1):1402. doi: 10.1038/s41467-017-01325-6.


Myosin II is not required for Drosophila tracheal branch elongation and cell intercalation.

Ochoa-Espinosa A, Harmansa S, Caussinus E, Affolter M.

Development. 2017 Aug 15;144(16):2961-2968. doi: 10.1242/dev.148940.


Dpp from the anterior stripe of cells is crucial for the growth of the Drosophila wing disc.

Matsuda S, Affolter M.

Elife. 2017 Jul 4;6. pii: e22319. doi: 10.7554/eLife.22319.


A nanobody-based toolset to investigate the role of protein localization and dispersal in Drosophila.

Harmansa S, Alborelli I, Bieli D, Caussinus E, Affolter M.

Elife. 2017 Apr 11;6. pii: e22549. doi: 10.7554/eLife.22549.


Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance.

Nakajima H, Yamamoto K, Agarwala S, Terai K, Fukui H, Fukuhara S, Ando K, Miyazaki T, Yokota Y, Schmelzer E, Belting HG, Affolter M, Lecaudey V, Mochizuki N.

Dev Cell. 2017 Mar 27;40(6):523-536.e6. doi: 10.1016/j.devcel.2017.02.019.


Distinct and redundant functions of Esama and VE-cadherin during vascular morphogenesis.

Sauteur L, Affolter M, Belting HG.

Development. 2017 Apr 15;144(8):1554-1565. doi: 10.1242/dev.140038. Epub 2017 Mar 6.


Absence of 11-keto reduction of cortisone and 11-ketotestosterone in the model organism zebrafish.

Tsachaki M, Meyer A, Weger B, Kratschmar DV, Tokarz J, Adamski J, Belting HG, Affolter M, Dickmeis T, Odermatt A.

J Endocrinol. 2017 Feb;232(2):323-335. doi: 10.1530/JOE-16-0495. Epub 2016 Dec 7.


Amnioserosa cell constriction but not epidermal actin cable tension autonomously drives dorsal closure.

Pasakarnis L, Frei E, Caussinus E, Affolter M, Brunner D.

Nat Cell Biol. 2016 Nov;18(11):1161-1172. doi: 10.1038/ncb3420. Epub 2016 Oct 17.


First Test of Long-Range Collisional Drag via Plasma Wave Damping.

Affolter M, Anderegg F, Dubin DH, Driscoll CF.

Phys Rev Lett. 2016 Oct 7;117(15):155001. Epub 2016 Oct 4.


deGradFP: A System to Knockdown GFP-Tagged Proteins.

Caussinus E, Affolter M.

Methods Mol Biol. 2016;1478:177-187. Review.


Amino Acid Composition of Breast Milk from Urban Chinese Mothers.

Garcia-Rodenas CL, Affolter M, Vinyes-Pares G, De Castro CA, Karagounis LG, Zhang Y, Wang P, Thakkar SK.

Nutrients. 2016 Sep 28;8(10). pii: E606.


Temporal Changes of Protein Composition in Breast Milk of Chinese Urban Mothers and Impact of Caesarean Section Delivery.

Affolter M, Garcia-Rodenas CL, Vinyes-Pares G, Jenni R, Roggero I, Avanti-Nigro O, de Castro CA, Zhao A, Zhang Y, Wang P, Thakkar SK, Favre L.

Nutrients. 2016 Aug 17;8(8). pii: E504. doi: 10.3390/nu8080504.


Cell behaviors and dynamics during angiogenesis.

Betz C, Lenard A, Belting HG, Affolter M.

Development. 2016 Jul 1;143(13):2249-60. doi: 10.1242/dev.135616. Review.


Mapping the molecular steps of secretory-lysosome-driven tracheal tube fusion.

Aydogan V, Belting HG, Affolter M.

Nat Cell Biol. 2016 Jun 28;18(7):720-2. doi: 10.1038/ncb3383.


Development and Application of Functionalized Protein Binders in Multicellular Organisms.

Bieli D, Alborelli I, Harmansa S, Matsuda S, Caussinus E, Affolter M.

Int Rev Cell Mol Biol. 2016;325:181-213. doi: 10.1016/bs.ircmb.2016.02.006. Epub 2016 Mar 19. Review.


Seeing is Believing, or How GFP Changed My Approach to Science.

Affolter M.

Curr Top Dev Biol. 2016;116:1-16. doi: 10.1016/bs.ctdb.2015.12.001. Epub 2016 Jan 21.


BMP morphogen gradients in flies.

Matsuda S, Harmansa S, Affolter M.

Cytokine Growth Factor Rev. 2016 Feb;27:119-27. doi: 10.1016/j.cytogfr.2015.11.003. Epub 2015 Nov 24.


A bacterial type III secretion-based protein delivery tool for broad applications in cell biology.

Ittig SJ, Schmutz C, Kasper CA, Amstutz M, Schmidt A, Sauteur L, Vigano MA, Low SH, Affolter M, Cornelis GR, Nigg EA, Arrieumerlou C.

J Cell Biol. 2015 Nov 23;211(4):913-31. doi: 10.1083/jcb.201502074.


Dpp spreading is required for medial but not for lateral wing disc growth.

Harmansa S, Hamaratoglu F, Affolter M, Caussinus E.

Nature. 2015 Nov 19;527(7578):317-22. doi: 10.1038/nature15712. Epub 2015 Nov 9.


Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules.

Bieli D, Kanca O, Requena D, Hamaratoglu F, Gohl D, Schedl P, Affolter M, Slattery M, Müller M, Estella C.

PLoS Genet. 2015 Oct 15;11(10):e1005376. doi: 10.1371/journal.pgen.1005376. eCollection 2015 Oct.


Homeodomain proteins: an update.

Bürglin TR, Affolter M.

Chromosoma. 2016 Jun;125(3):497-521. doi: 10.1007/s00412-015-0543-8. Epub 2015 Oct 13. Review.


Endothelial cell division in angiogenic sprouts of differing cellular architecture.

Aydogan V, Lenard A, Denes AS, Sauteur L, Belting HG, Affolter M.

Biol Open. 2015 Sep 14;4(10):1259-69. doi: 10.1242/bio.012740.


In vitro activity of commercial probiotic Lactobacillus strains against uropathogenic Escherichia coli.

Delley M, Bruttin A, Richard M, Affolter M, Rezzonico E, Brück WM.

FEMS Microbiol Lett. 2015 Jul;362(13):fnv096. doi: 10.1093/femsle/fnv096. Epub 2015 Jun 14.


In memoriam--Walter J. Gehring.

Affolter M, Nigg EA.

Chromosoma. 2015 Sep;124(3):291. doi: 10.1007/s00412-015-0523-z. Epub 2015 May 30. No abstract available.


A cellular process that includes asymmetric cytokinesis remodels the dorsal tracheal branches in Drosophila larvae.

Denes AS, Kanca O, Affolter M.

Development. 2015 May 15;142(10):1794-805. doi: 10.1242/dev.118372.


Endothelial cell self-fusion during vascular pruning.

Lenard A, Daetwyler S, Betz C, Ellertsdottir E, Belting HG, Huisken J, Affolter M.

PLoS Biol. 2015 Apr 17;13(4):e1002126. doi: 10.1371/journal.pbio.1002126. eCollection 2015 Apr.


The Drosophila melanogaster Mutants apblot and apXasta Affect an Essential apterous Wing Enhancer.

Bieli D, Kanca O, Gohl D, Denes A, Schedl P, Affolter M, Müller M.

G3 (Bethesda). 2015 Apr 2;5(6):1129-43. doi: 10.1534/g3.115.017707.


Formin-mediated actin polymerization at endothelial junctions is required for vessel lumen formation and stabilization.

Phng LK, Gebala V, Bentley K, Philippides A, Wacker A, Mathivet T, Sauteur L, Stanchi F, Belting HG, Affolter M, Gerhardt H.

Dev Cell. 2015 Jan 12;32(1):123-32. doi: 10.1016/j.devcel.2014.11.017.


Space charge frequency shifts of the cyclotron modes in multi-species ion plasmas.

Affolter M, Anderegg F, Driscoll CF.

J Am Soc Mass Spectrom. 2015 Feb;26(2):330-6. doi: 10.1007/s13361-014-1030-9. Epub 2014 Dec 2.


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