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Items: 30

1.

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.

Barylski J, Enault F, Dutilh BE, Schuller MBP, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM.

Syst Biol. 2019 May 25. pii: syz036. doi: 10.1093/sysbio/syz036. [Epub ahead of print]

PMID:
31127947
2.

Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

Korf IHE, Meier-Kolthoff JP, Adriaenssens EM, Kropinski AM, Nimtz M, Rohde M, van Raaij MJ, Wittmann J.

Viruses. 2019 May 17;11(5). pii: E454. doi: 10.3390/v11050454.

3.

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.

Bin Jang H, Bolduc B, Zablocki O, Kuhn JH, Roux S, Adriaenssens EM, Brister JR, Kropinski AM, Krupovic M, Lavigne R, Turner D, Sullivan MB.

Nat Biotechnol. 2019 Jun;37(6):632-639. doi: 10.1038/s41587-019-0100-8. Epub 2019 May 6.

4.

The Third Annual Meeting of the European Virus Bioinformatics Center.

Hufsky F, Ibrahim B, Modha S, Clokie MRJ, Deinhardt-Emmer S, Dutilh BE, Lycett S, Simmonds P, Thiel V, Abroi A, Adriaenssens EM, Escalera-Zamudio M, Kelly JN, Lamkiewicz K, Lu L, Susat J, Sicheritz T, Robertson DL, Marz M.

Viruses. 2019 May 5;11(5). pii: E420. doi: 10.3390/v11050420.

5.

Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment.

Farkas K, Adriaenssens EM, Walker DI, McDonald JE, Malham SK, Jones DL.

Food Environ Virol. 2019 Jun;11(2):113-119. doi: 10.1007/s12560-019-09369-1. Epub 2019 Feb 13.

6.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
7.

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.

Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P.

J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17.

8.

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses.

Adriaenssens EM, Farkas K, Harrison C, Jones DL, Allison HE, McCarthy AJ.

mSystems. 2018 May 22;3(3). pii: e00025-18. doi: 10.1128/mSystems.00025-18. eCollection 2018 May-Jun.

9.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
10.

Purification of Bacteriophages Using Anion-Exchange Chromatography.

Vandenheuvel D, Rombouts S, Adriaenssens EM.

Methods Mol Biol. 2018;1681:59-69. doi: 10.1007/978-1-4939-7343-9_5.

PMID:
29134587
11.

Environmental drivers of viral community composition in Antarctic soils identified by viromics.

Adriaenssens EM, Kramer R, Van Goethem MW, Makhalanyane TP, Hogg I, Cowan DA.

Microbiome. 2017 Jul 19;5(1):83. doi: 10.1186/s40168-017-0301-7.

12.

Namib Desert Soil Microbial Community Diversity, Assembly, and Function Along a Natural Xeric Gradient.

Scola V, Ramond JB, Frossard A, Zablocki O, Adriaenssens EM, Johnson RM, Seely M, Cowan DA.

Microb Ecol. 2018 Jan;75(1):193-203. doi: 10.1007/s00248-017-1009-8. Epub 2017 Jun 24.

PMID:
28647755
13.

Metaviromes of Extracellular Soil Viruses along a Namib Desert Aridity Gradient.

Zablocki O, Adriaenssens EM, Frossard A, Seely M, Ramond JB, Cowan D.

Genome Announc. 2017 Jan 12;5(2). pii: e01470-16. doi: 10.1128/genomeA.01470-16.

14.

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.

Arch Virol. 2017 Apr;162(4):1153-1157. doi: 10.1007/s00705-016-3173-4. Epub 2016 Dec 31. No abstract available.

PMID:
28040838
15.

Metaviromics of Namib Desert Salt Pans: A Novel Lineage of Haloarchaeal Salterproviruses and a Rich Source of ssDNA Viruses.

Adriaenssens EM, van Zyl LJ, Cowan DA, Trindade MI.

Viruses. 2016 Jan 8;8(1). pii: E14. doi: 10.3390/v8010014.

16.

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.

Krupovic M, Dutilh BE, Adriaenssens EM, Wittmann J, Vogensen FK, Sullivan MB, Rumnieks J, Prangishvili D, Lavigne R, Kropinski AM, Klumpp J, Gillis A, Enault F, Edwards RA, Duffy S, Clokie MR, Barylski J, Ackermann HW, Kuhn JH.

Arch Virol. 2016 Apr;161(4):1095-9. doi: 10.1007/s00705-015-2728-0. Epub 2016 Jan 5. No abstract available.

PMID:
26733293
17.

Diversity and Ecology of Viruses in Hyperarid Desert Soils.

Zablocki O, Adriaenssens EM, Cowan D.

Appl Environ Microbiol. 2015 Nov 20;82(3):770-7. doi: 10.1128/AEM.02651-15. Print 2016 Feb 1. Review.

18.

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.

Adriaenssens EM, Edwards R, Nash JHE, Mahadevan P, Seto D, Ackermann HW, Lavigne R, Kropinski AM.

Virology. 2015 Mar;477:144-154. doi: 10.1016/j.virol.2014.10.016. Epub 2014 Nov 14.

19.

High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils.

Zablocki O, van Zyl L, Adriaenssens EM, Rubagotti E, Tuffin M, Cary SC, Cowan D.

Appl Environ Microbiol. 2014 Nov;80(22):6888-97. doi: 10.1128/AEM.01525-14. Epub 2014 Aug 29.

20.

Metagenomic analysis of the viral community in Namib Desert hypoliths.

Adriaenssens EM, Van Zyl L, De Maayer P, Rubagotti E, Rybicki E, Tuffin M, Cowan DA.

Environ Microbiol. 2015 Feb;17(2):480-95. doi: 10.1111/1462-2920.12528. Epub 2014 Jul 7.

PMID:
24912085
21.

Using signature genes as tools to assess environmental viral ecology and diversity.

Adriaenssens EM, Cowan DA.

Appl Environ Microbiol. 2014 Aug;80(15):4470-80. Review.

22.

Draft Genome Sequence of the Aromatic Hydrocarbon-Degrading Bacterium Sphingobium sp. Strain Ant17, Isolated from Antarctic Soil.

Adriaenssens EM, Guerrero LD, Makhalanyane TP, Aislabie JM, Cowan DA.

Genome Announc. 2014 Apr 10;2(2). pii: e00212-14. doi: 10.1128/genomeA.00212-14.

23.

Niche-dependent genetic diversity in Antarctic metaviromes.

Zablocki O, van Zyl L, Adriaenssens EM, Rubagotti E, Tuffin M, Cary SC, Cowan D.

Bacteriophage. 2014 Dec 16;4(4):e980125. eCollection 2014.

24.

Three proposed new bacteriophage genera of staphylococcal phages: "3alikevirus", "77likevirus" and "Phietalikevirus".

Gutiérrez D, Adriaenssens EM, Martínez B, Rodríguez A, Lavigne R, Kropinski AM, García P.

Arch Virol. 2014 Feb;159(2):389-98.

PMID:
24022640
25.

Complete genome sequence of the novel Escherichia coli phage phAPEC8.

Tsonos J, Adriaenssens EM, Klumpp J, Hernalsteens JP, Lavigne R, De Greve H.

J Virol. 2012 Dec;86(23):13117-8. doi: 10.1128/JVI.02374-12.

26.

CIM(®) monolithic anion-exchange chromatography as a useful alternative to CsCl gradient purification of bacteriophage particles.

Adriaenssens EM, Lehman SM, Vandersteegen K, Vandenheuvel D, Philippe DL, Cornelissen A, Clokie MR, García AJ, De Proft M, Maes M, Lavigne R.

Virology. 2012 Dec 20;434(2):265-70. doi: 10.1016/j.virol.2012.09.018. Epub 2012 Oct 16.

27.

A suggested new bacteriophage genus: "Viunalikevirus".

Adriaenssens EM, Ackermann HW, Anany H, Blasdel B, Connerton IF, Goulding D, Griffiths MW, Hooton SP, Kutter EM, Kropinski AM, Lee JH, Maes M, Pickard D, Ryu S, Sepehrizadeh Z, Shahrbabak SS, Toribio AL, Lavigne R.

Arch Virol. 2012 Oct;157(10):2035-46. Epub 2012 Jun 17.

28.

Complete genome sequence of the giant Pseudomonas phage Lu11.

Adriaenssens EM, Mattheus W, Cornelissen A, Shaburova O, Krylov VN, Kropinski AM, Lavigne R.

J Virol. 2012 Jun;86(11):6369-70. doi: 10.1128/JVI.00641-12.

29.

T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'.

Adriaenssens EM, Van Vaerenbergh J, Vandenheuvel D, Dunon V, Ceyssens PJ, De Proft M, Kropinski AM, Noben JP, Maes M, Lavigne R.

PLoS One. 2012;7(3):e33227. doi: 10.1371/journal.pone.0033227. Epub 2012 Mar 7.

30.

Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, belonging to the "phiKMV-like viruses".

Adriaenssens EM, Ceyssens PJ, Dunon V, Ackermann HW, Van Vaerenbergh J, Maes M, De Proft M, Lavigne R.

Appl Environ Microbiol. 2011 May;77(10):3443-50. doi: 10.1128/AEM.00128-11. Epub 2011 Mar 18.

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