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Items: 8

1.

Automatically Fixing Errors in Glycoprotein Structures with Rosetta.

Frenz B, Rämisch S, Borst AJ, Walls AC, Adolf-Bryfogle J, Schief WR, Veesler D, DiMaio F.

Structure. 2019 Jan 2;27(1):134-139.e3. doi: 10.1016/j.str.2018.09.006. Epub 2018 Oct 18.

PMID:
30344107
2.

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL Jr.

PLoS Comput Biol. 2018 Apr 27;14(4):e1006112. doi: 10.1371/journal.pcbi.1006112. eCollection 2018 Apr.

3.

Modeling and docking of antibody structures with Rosetta.

Weitzner BD, Jeliazkov JR, Lyskov S, Marze N, Kuroda D, Frick R, Adolf-Bryfogle J, Biswas N, Dunbrack RL Jr, Gray JJ.

Nat Protoc. 2017 Feb;12(2):401-416. doi: 10.1038/nprot.2016.180. Epub 2017 Jan 26.

4.

Residue-centric modeling and design of saccharide and glycoconjugate structures.

Labonte JW, Adolf-Bryfogle J, Schief WR, Gray JJ.

J Comput Chem. 2017 Feb 15;38(5):276-287. doi: 10.1002/jcc.24679. Epub 2016 Nov 30. Erratum in: J Comput Chem. 2017 May 15;38(13):1015.

5.

PyIgClassify: a database of antibody CDR structural classifications.

Adolf-Bryfogle J, Xu Q, North B, Lehmann A, Dunbrack RL Jr.

Nucleic Acids Res. 2015 Jan;43(Database issue):D432-8. doi: 10.1093/nar/gku1106. Epub 2014 Nov 11.

6.

Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation.

Thomas CJ, Kotova E, Andrake M, Adolf-Bryfogle J, Glaser R, Regnard C, Tulin AV.

Mol Cell. 2014 Mar 6;53(5):831-42. doi: 10.1016/j.molcel.2014.01.005. Epub 2014 Feb 6.

7.

The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.

Adolf-Bryfogle J, Dunbrack RL Jr.

PLoS One. 2013 Jul 9;8(7):e66856. doi: 10.1371/journal.pone.0066856. Print 2013.

8.

Human Alzheimer's disease synaptic O-GlcNAc site mapping and iTRAQ expression proteomics with ion trap mass spectrometry.

Skorobogatko YV, Deuso J, Adolf-Bryfogle J, Nowak MG, Gong Y, Lippa CF, Vosseller K.

Amino Acids. 2011 Mar;40(3):765-79. doi: 10.1007/s00726-010-0645-9. Epub 2010 Jun 19. Erratum in: Amino Acids. 2012 Jun;42(6):2529. Adolf-Bergfoyle, Jared [corrected to Adolf-Bryfogle, Jared].

PMID:
20563614

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