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Items: 13

1.

CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases.

Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, Jiang Y, Joseph T, Katsonis P, Kotte S, Kundu K, Lichtarge O, Martelli PL, Mooney SD, Moult J, Pal LR, Poitras J, Radivojac P, Rao A, Sivadasan N, Sunderam U, Saipradeep VG, Yin Y, Zaucha J, Brenner SE, Meyn MS.

Hum Mutat. 2019 Sep;40(9):1373-1391. doi: 10.1002/humu.23874. Epub 2019 Sep 3.

PMID:
31322791
2.

VIPdb, a genetic Variant Impact Predictor Database.

Hu Z, Yu C, Furutsuki M, Andreoletti G, Ly M, Hoskins R, Adhikari AN, Brenner SE.

Hum Mutat. 2019 Sep;40(9):1202-1214. doi: 10.1002/humu.23858. Epub 2019 Aug 17.

PMID:
31283070
3.

Gene-specific features enhance interpretation of mutational impact on acid α-glucosidase enzyme activity.

Adhikari AN.

Hum Mutat. 2019 Sep;40(9):1507-1518. doi: 10.1002/humu.23846. Epub 2019 Aug 7.

PMID:
31228295
4.

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.

Shigaki D, Adato O, Adhikari AN, Dong S, Hawkins-Hooker A, Inoue F, Juven-Gershon T, Kenlay H, Martin B, Patra A, Penzar DD, Schubach M, Xiong C, Yan Z, Boyle AP, Kreimer A, Kulakovskiy IV, Reid J, Unger R, Yosef N, Shendure J, Ahituv N, Kircher M, Beer MA.

Hum Mutat. 2019 Sep;40(9):1280-1291. doi: 10.1002/humu.23797. Epub 2019 Jun 23.

PMID:
31106481
5.

Multisystem Anomalies in Severe Combined Immunodeficiency with Mutant BCL11B.

Punwani D, Zhang Y, Yu J, Cowan MJ, Rana S, Kwan A, Adhikari AN, Lizama CO, Mendelsohn BA, Fahl SP, Chellappan A, Srinivasan R, Brenner SE, Wiest DL, Puck JM.

N Engl J Med. 2016 Dec 1;375(22):2165-2176.

6.

Aromatic claw: A new fold with high aromatic content that evades structural prediction.

Sachleben JR, Adhikari AN, Gawlak G, Hoey RJ, Liu G, Joachimiak A, Montelione GT, Sosnick TR, Koide S.

Protein Sci. 2017 Feb;26(2):208-217. doi: 10.1002/pro.3069. Epub 2016 Nov 10.

7.

Infant Mandibular Distraction for Upper Airway Obstruction: A Clinical Audit.

Adhikari AN, Heggie AA, Shand JM, Bordbar P, Pellicano A, Kilpatrick N.

Plast Reconstr Surg Glob Open. 2016 Jul 20;4(7):e812. doi: 10.1097/GOX.0000000000000822. eCollection 2016 Jul.

8.

Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar.

Baxa MC, Yu W, Adhikari AN, Ge L, Xia Z, Zhou R, Freed KF, Sosnick TR.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8302-7. doi: 10.1073/pnas.1503613112. Epub 2015 Jun 22.

9.

Simplified protein models: predicting folding pathways and structure using amino acid sequences.

Adhikari AN, Freed KF, Sosnick TR.

Phys Rev Lett. 2013 Jul 12;111(2):028103. Epub 2013 Jul 11.

10.

De novo prediction of protein folding pathways and structure using the principle of sequential stabilization.

Adhikari AN, Freed KF, Sosnick TR.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17442-7. doi: 10.1073/pnas.1209000109. Epub 2012 Oct 8.

11.

Inadequacy of the risk factor based approach to detect gestational diabetes mellitus.

Dahanayaka NJ, Agampodi SB, Ranasinghe OR, Jayaweera PM, Wickramasinghe WA, Adhikari AN, Chathurani HK, Dissanayaka UT.

Ceylon Med J. 2012 Mar;57(1):5-9. doi: 10.4038/cmj.v57i1.4193.

12.

Modeling large regions in proteins: applications to loops, termini, and folding.

Adhikari AN, Peng J, Wilde M, Xu J, Freed KF, Sosnick TR.

Protein Sci. 2012 Jan;21(1):107-21. doi: 10.1002/pro.767. Epub 2011 Dec 5.

13.

Heterogeneous dynamics and dynamic heterogeneities at the glass transition probed with single molecule spectroscopy.

Adhikari AN, Capurso NA, Bingemann D.

J Chem Phys. 2007 Sep 21;127(11):114508.

PMID:
17887858

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