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Items: 1 to 50 of 87

1.

Yiqi Chutan Tang Reduces Gefitinib-Induced Drug Resistance in Non-Small-Cell Lung Cancer by Targeting Apoptosis and Autophagy.

Zhang J, Sun L, Cui J, Wang J, Liu X, Aung TN, Qu Z, Chen Z, Adelson DL, Lin L.

Cytometry A. 2019 Aug 14. doi: 10.1002/cyto.a.23869. [Epub ahead of print]

PMID:
31411813
2.

Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection With Transcriptome Analysis.

Shen H, Qu Z, Harata-Lee Y, Aung TN, Cui J, Wang W, Kortschak RD, Adelson DL.

Front Oncol. 2019 Jul 12;9:632. doi: 10.3389/fonc.2019.00632. eCollection 2019.

3.

An effective drug sensitizing agent increases gefitinib treatment by down regulating PI3K/Akt/mTOR pathway and up regulating autophagy in non-small cell lung cancer.

Zhang J, Qu Z, Yao H, Sun L, Harata-Lee Y, Cui J, Aung TN, Liu X, You R, Wang W, Hai L, Adelson DL, Lin L.

Biomed Pharmacother. 2019 Jul 13;118:109169. doi: 10.1016/j.biopha.2019.109169. [Epub ahead of print]

4.

Effect of Compound Kushen Injection, a Natural Compound Mixture, and Its Identified Chemical Components on Migration and Invasion of Colon, Brain, and Breast Cancer Cell Lines.

Nourmohammadi S, Aung TN, Cui J, Pei JV, De Ieso ML, Harata-Lee Y, Qu Z, Adelson DL, Yool AJ.

Front Oncol. 2019 Apr 26;9:314. doi: 10.3389/fonc.2019.00314. eCollection 2019.

5.

Cell cycle, energy metabolism and DNA repair pathways in cancer cells are suppressed by Compound Kushen Injection.

Cui J, Qu Z, Harata-Lee Y, Nwe Aung T, Shen H, Wang W, Adelson DL.

BMC Cancer. 2019 Jan 24;19(1):103. doi: 10.1186/s12885-018-5230-8.

6.

Zuo Gui Wan Alters Expression of Energy Metabolism Genes and Prevents Cell Death in High-Glucose Loaded Mouse Embryos.

Liang Q, Qu Z, Liang Y, Feng Q, Niu X, Bai T, Wang Y, Song Q, Adelson DL.

Evid Based Complement Alternat Med. 2018 Jun 25;2018:2409471. doi: 10.1155/2018/2409471. eCollection 2018.

7.

Horizontal transfer of BovB and L1 retrotransposons in eukaryotes.

Ivancevic AM, Kortschak RD, Bertozzi T, Adelson DL.

Genome Biol. 2018 Jul 9;19(1):85. doi: 10.1186/s13059-018-1456-7.

8.

Transposable elements and gene expression during the evolution of amniotes.

Zeng L, Pederson SM, Kortschak RD, Adelson DL.

Mob DNA. 2018 Jun 12;9:17. doi: 10.1186/s13100-018-0124-5. eCollection 2018.

9.

Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact.

Zeng L, Pederson SM, Cao D, Qu Z, Hu Z, Adelson DL, Wei C.

J Comput Biol. 2018 Jun;25(6):551-562. doi: 10.1089/cmb.2017.0228. Epub 2018 Apr 30.

PMID:
29708779
10.

Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.

Buckley RM, Kortschak RD, Adelson DL.

PLoS Comput Biol. 2018 Apr 20;14(4):e1006091. doi: 10.1371/journal.pcbi.1006091. eCollection 2018 Apr.

11.

Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.

Zeng L, Kortschak RD, Raison JM, Bertozzi T, Adelson DL.

PLoS One. 2018 Mar 14;13(3):e0193588. doi: 10.1371/journal.pone.0193588. eCollection 2018.

12.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2566-E2574. doi: 10.1073/pnas.1720554115. Epub 2018 Feb 26.

13.

Correction to: Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

Alanazi I, Ebrahimie E, Hoffmann P, Adelson DL.

Apoptosis. 2018 Jan;23(1):92. doi: 10.1007/s10495-017-1431-x.

PMID:
29234905
14.

Similar Evolutionary Trajectories for Retrotransposon Accumulation in Mammals.

Buckley RM, Kortschak RD, Raison JM, Adelson DL.

Genome Biol Evol. 2017 Sep 1;9(9):2336-2353. doi: 10.1093/gbe/evx179.

15.

Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis.

Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL.

Cell Discov. 2017 Aug 29;3:17031. doi: 10.1038/celldisc.2017.31. eCollection 2017.

16.

Expression patterns of HENMT1 and PIWIL1 in human testis: implications for transposon expression.

Hempfling AL, Lim SL, Adelson DL, Evans J, O'Connor AE, Qu ZP, Kliesch S, Weidner W, O'Bryan MK, Bergmann M.

Reproduction. 2017 Oct;154(4):363-374. doi: 10.1530/REP-16-0586. Epub 2017 Jul 4.

PMID:
28676534
17.

Seed weight differences between wild and domesticated soybeans are associated with specific changes in gene expression.

Yu C, Qu Z, Zhang Y, Zhang X, Lan T, Adelson DL, Wang D, Zhu Y.

Plant Cell Rep. 2017 Sep;36(9):1417-1426. doi: 10.1007/s00299-017-2165-5. Epub 2017 Jun 26.

PMID:
28653111
18.

Understanding the Effectiveness of Natural Compound Mixtures in Cancer through Their Molecular Mode of Action.

Aung TN, Qu Z, Kortschak RD, Adelson DL.

Int J Mol Sci. 2017 Mar 17;18(3). pii: E656. doi: 10.3390/ijms18030656. Review.

19.

A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.

Fruzangohar M, Ebrahimie E, Adelson DL.

PLoS One. 2017 Feb 15;12(2):e0170486. doi: 10.1371/journal.pone.0170486. eCollection 2017.

20.

Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.

Wang D, Qu Z, Yang L, Zhang Q, Liu ZH, Do T, Adelson DL, Wang ZY, Searle I, Zhu JK.

Plant J. 2017 Apr;90(1):133-146. doi: 10.1111/tpj.13481.

21.

LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life.

Ivancevic AM, Kortschak RD, Bertozzi T, Adelson DL.

Genome Biol Evol. 2016 Dec 14;8(11):3301-3322.

22.

Identification of candidate anti-cancer molecular mechanisms of Compound Kushen Injection using functional genomics.

Qu Z, Cui J, Harata-Lee Y, Aung TN, Feng Q, Raison JM, Kortschak RD, Adelson DL.

Oncotarget. 2016 Oct 4;7(40):66003-66019. doi: 10.18632/oncotarget.11788.

23.

In depth analysis of the Sox4 gene locus that consists of sense and natural antisense transcripts.

Ling KH, Brautigan PJ, Moore S, Fraser R, Leong MP, Leong JW, Zainal Abidin S, Lee HC, Cheah PS, Raison JM, Babic M, Lee YK, Daish T, Mattiske DM, Mann JR, Adelson DL, Thomas PQ, Hahn CN, Scott HS.

Data Brief. 2016 Feb 17;7:282-90. doi: 10.1016/j.dib.2016.01.045. eCollection 2016 Jun.

24.

Derivation of an endogenous small RNA from double-stranded Sox4 sense and natural antisense transcripts in the mouse brain.

Ling KH, Brautigan PJ, Moore S, Fraser R, Cheah PS, Raison JM, Babic M, Lee YK, Daish T, Mattiske DM, Mann JR, Adelson DL, Thomas PQ, Hahn CN, Scott HS.

Genomics. 2016 Mar;107(2-3):88-99. doi: 10.1016/j.ygeno.2016.01.006. Epub 2016 Jan 21.

25.

Correction: HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.

Lim SL, Qu ZP, Kortschak RD, Lawrence DM, Geoghegan J, Hempfling AL, Bergmann M, Goodnow CC, Ormandy CJ, Wong L, Mann J, Scott HS, Jamsai D, Adelson DL, O'Bryan MK.

PLoS Genet. 2015 Dec 29;11(12):e1005782. doi: 10.1371/journal.pgen.1005782. eCollection 2015 Dec. No abstract available.

26.

HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.

Lim SL, Qu ZP, Kortschak RD, Lawrence DM, Geoghegan J, Hempfling AL, Bergmann M, Goodnow CC, Ormandy CJ, Wong L, Mann J, Scott HS, Jamsai D, Adelson DL, O'Bryan MK.

PLoS Genet. 2015 Oct 23;11(10):e1005620. doi: 10.1371/journal.pgen.1005620. eCollection 2015 Oct. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005782.

27.

Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics.

Hu Z, Scott HS, Qin G, Zheng G, Chu X, Xie L, Adelson DL, Oftedal BE, Venugopal P, Babic M, Hahn CN, Zhang B, Wang X, Li N, Wei C.

Sci Rep. 2015 Jul 9;5:10940. doi: 10.1038/srep10940.

28.

Correction: Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria.

Fruzangohar M, Ebrahimie E, Ogunniyi AD, Mahdi LK, Paton JC, Adelson DL.

PLoS One. 2015 Apr 17;10(4):e0125537. doi: 10.1371/journal.pone.0125537. eCollection 2015. No abstract available.

29.

MicroRNAs are part of the regulatory network that controls EGF induced apoptosis, including elements of the JAK/STAT pathway, in A431 cells.

Alanazi I, Hoffmann P, Adelson DL.

PLoS One. 2015 Mar 17;10(3):e0120337. doi: 10.1371/journal.pone.0120337. eCollection 2015.

30.

Whole-exome sequencing points to considerable genetic heterogeneity of cerebral palsy.

McMichael G, Bainbridge MN, Haan E, Corbett M, Gardner A, Thompson S, van Bon BW, van Eyk CL, Broadbent J, Reynolds C, O'Callaghan ME, Nguyen LS, Adelson DL, Russo R, Jhangiani S, Doddapaneni H, Muzny DM, Gibbs RA, Gecz J, MacLennan AH.

Mol Psychiatry. 2015 Feb;20(2):176-82. doi: 10.1038/mp.2014.189. Epub 2015 Feb 10.

PMID:
25666757
31.

Mammalian genome evolution as a result of epigenetic regulation of transposable elements.

Buckley RM, Adelson DL.

Biomol Concepts. 2014 Jun;5(3):183-94. doi: 10.1515/bmc-2014-0013. Review.

PMID:
25372752
32.

Copy number variation in the horse genome.

Ghosh S, Qu Z, Das PJ, Fang E, Juras R, Cothran EG, McDonell S, Kenney DG, Lear TL, Adelson DL, Chowdhary BP, Raudsepp T.

PLoS Genet. 2014 Oct 23;10(10):e1004712. doi: 10.1371/journal.pgen.1004712. eCollection 2014 Oct.

33.

A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease.

Mahdi LK, Deihimi T, Zamansani F, Fruzangohar M, Adelson DL, Paton JC, Ogunniyi AD, Ebrahimie E.

BMC Genomics. 2014 Sep 8;15:769. doi: 10.1186/1471-2164-15-769.

34.

ARMC5 mutations are common in familial bilateral macronodular adrenal hyperplasia.

Gagliardi L, Schreiber AW, Hahn CN, Feng J, Cranston T, Boon H, Hotu C, Oftedal BE, Cutfield R, Adelson DL, Braund WJ, Gordon RD, Rees DA, Grossman AB, Torpy DJ, Scott HS.

J Clin Endocrinol Metab. 2014 Sep;99(9):E1784-92. doi: 10.1210/jc.2014-1265. Epub 2014 Jun 6.

PMID:
24905064
35.

The sheep genome illuminates biology of the rumen and lipid metabolism.

Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SMJ, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristensen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas J, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP.

Science. 2014 Jun 6;344(6188):1168-1173. doi: 10.1126/science.1252806.

36.

Transcription of nuclear organellar DNA in a model plant system.

Wang D, Qu Z, Adelson DL, Zhu JK, Timmis JN.

Genome Biol Evol. 2014 May 27;6(6):1327-34. doi: 10.1093/gbe/evu111.

37.

Understanding the undelaying mechanism of HA-subtyping in the level of physic-chemical characteristics of protein.

Ebrahimi M, Aghagolzadeh P, Shamabadi N, Tahmasebi A, Alsharifi M, Adelson DL, Hemmatzadeh F, Ebrahimie E.

PLoS One. 2014 May 8;9(5):e96984. doi: 10.1371/journal.pone.0096984. eCollection 2014. Erratum in: PLoS One. 2014;9(6):e99921.

38.

Discovery of a novel long terminal repeat (LTR2i_SS) in Sus Scrofa.

Lim SL, Kortschak RD, Adelson DL.

Anim Genet. 2014 Jun;45(3):367-72. doi: 10.1111/age.12138. Epub 2014 Mar 12.

PMID:
24617963
39.

Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse.

Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, Archer S, Sandmeyer L, Ludwig A, Foerster D, Pruvost M, Reissmann M, Bortfeldt R, Adelson DL, Lim SL, Nelson J, Haase B, Engensteiner M, Leeb T, Forsyth G, Mienaltowski MJ, Mahadevan P, Hofreiter M, Paijmans JL, Gonzalez-Fortes G, Grahn B, Brooks SA.

PLoS One. 2013 Oct 22;8(10):e78280. doi: 10.1371/journal.pone.0078280. eCollection 2013.

40.

Improved part-of-speech prediction in suffix analysis.

Fruzangohar M, Kroeger TA, Adelson DL.

PLoS One. 2013 Oct 4;8(10):e76042. doi: 10.1371/journal.pone.0076042. eCollection 2013.

41.

Jumping the fine LINE between species: horizontal transfer of transposable elements in animals catalyses genome evolution.

Ivancevic AM, Walsh AM, Kortschak RD, Adelson DL.

Bioessays. 2013 Dec;35(12):1071-82. doi: 10.1002/bies.201300072. Epub 2013 Sep 3. Review.

PMID:
24003001
42.

A transcription factor contributes to pathogenesis and virulence in Streptococcus pneumoniae.

Mahdi LK, Ebrahimie E, Adelson DL, Paton JC, Ogunniyi AD.

PLoS One. 2013 Aug 13;8(8):e70862. doi: 10.1371/journal.pone.0070862. eCollection 2013.

43.

Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

Alanazi I, Ebrahimie E, Hoffmann P, Adelson DL.

Apoptosis. 2013 Nov;18(11):1291-1305. doi: 10.1007/s10495-013-0887-6. Erratum in: Apoptosis. 2017 Dec 12;:.

PMID:
23892916
44.

A comparative analysis of algorithms for somatic SNV detection in cancer.

Roberts ND, Kortschak RD, Parker WT, Schreiber AW, Branford S, Scott HS, Glonek G, Adelson DL.

Bioinformatics. 2013 Sep 15;29(18):2223-30. doi: 10.1093/bioinformatics/btt375. Epub 2013 Jul 9.

45.

Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria.

Fruzangohar M, Ebrahimie E, Ogunniyi AD, Mahdi LK, Paton JC, Adelson DL.

PLoS One. 2013;8(3):e58759. doi: 10.1371/journal.pone.0058759. Epub 2013 Mar 11. Erratum in: PLoS One. 2015;10(4):e0125537.

46.
47.

Widespread horizontal transfer of retrotransposons.

Walsh AM, Kortschak RD, Gardner MG, Bertozzi T, Adelson DL.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1012-6. doi: 10.1073/pnas.1205856110. Epub 2012 Dec 31.

48.

Evolutionary conservation and functional roles of ncRNA.

Qu Z, Adelson DL.

Front Genet. 2012 Oct 9;3:205. doi: 10.3389/fgene.2012.00205. eCollection 2012.

49.

Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes.

Qu Z, Adelson DL.

PLoS One. 2012;7(8):e42638. doi: 10.1371/journal.pone.0042638. Epub 2012 Aug 6.

50.

Deep sequencing analysis of the developing mouse brain reveals a novel microRNA.

Ling KH, Brautigan PJ, Hahn CN, Daish T, Rayner JR, Cheah PS, Raison JM, Piltz S, Mann JR, Mattiske DM, Thomas PQ, Adelson DL, Scott HS.

BMC Genomics. 2011 Apr 5;12:176. doi: 10.1186/1471-2164-12-176.

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