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Items: 1 to 50 of 388

1.

Improved production of the NiFe-hydrogenase from Pyrococcus furiosus by increased expression of maturation genes.

Wu CH, Ponir CA, Haja DK, Adams MWW.

Protein Eng Des Sel. 2018 Oct 24. doi: 10.1093/protein/gzy025. [Epub ahead of print]

PMID:
30358873
2.

Iron- and Aluminum-Induced Depletion of Molybdenum in Acidic Environments Impedes the Nitrogen Cycle.

Ge X, Vaccaro BJ, Thorgersen MP, Poole FL 2nd, Majumder EL, Zane GM, De León KB, Lancaster WA, Moon JW, Paradis CJ, von Netzer F, Stahl DA, Adams PD, Arkin AP, Wall JD, Hazen TC, Adams MWW.

Environ Microbiol. 2018 Oct 5. doi: 10.1111/1462-2920.14435. [Epub ahead of print]

PMID:
30289197
3.

A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum.

Zeldes BM, Straub CT, Otten JK, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2018 Dec;115(12):2951-2961. doi: 10.1002/bit.26829. Epub 2018 Oct 23.

PMID:
30199090
4.

Characterization of membrane-bound sulfane reductase: A missing link in the evolution of modern day respiratory complexes.

Wu CH, Schut GJ, Poole FL 2nd, Haja DK, Adams MWW.

J Biol Chem. 2018 Oct 26;293(43):16687-16696. doi: 10.1074/jbc.RA118.005092. Epub 2018 Sep 4.

PMID:
30181217
5.

A new era for electron bifurcation.

Peters JW, Beratan DN, Bothner B, Dyer RB, Harwood CS, Heiden ZM, Hille R, Jones AK, King PW, Lu Y, Lubner CE, Minteer SD, Mulder DW, Raugei S, Schut GJ, Seefeldt LC, Tokmina-Lukaszewska M, Zadvornyy OA, Zhang P, Adams MW.

Curr Opin Chem Biol. 2018 Aug 1;47:32-38. doi: 10.1016/j.cbpa.2018.07.026. [Epub ahead of print] Review.

PMID:
30077080
6.

Engineering redox-balanced ethanol production in the cellulolytic and extremely thermophilic bacterium, Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Rubinstein GM, Scott IM, Lipscomb GL, Poole Ii FL, Kelly RM, Adams MWW.

Metab Eng Commun. 2018 May 28;7:e00073. doi: 10.1016/j.mec.2018.e00073. eCollection 2018 Dec.

7.

Parsing in vivo and in vitro contributions to microcrystalline cellulose hydrolysis by multidomain glycoside hydrolases in the Caldicellulosiruptor bescii secretome.

Conway JM, Crosby JR, McKinley BS, Seals NL, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2018 Oct;115(10):2426-2440. doi: 10.1002/bit.26773. Epub 2018 Aug 1.

PMID:
29969511
8.

Biotechnology of extremely thermophilic archaea.

Straub CT, Counts JA, Nguyen DMN, Wu CH, Zeldes BM, Crosby JR, Conway JM, Otten JK, Lipscomb GL, Schut GJ, Adams MWW, Kelly RM.

FEMS Microbiol Rev. 2018 Sep 1;42(5):543-578. doi: 10.1093/femsre/fuy012.

PMID:
29945179
9.

Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Awuku NK, Lipscomb GL, Poole FL, Rubinstein GM, Conway JM, Kelly RM, Adams MWW.

Extremophiles. 2018 Jul;22(4):629-638. doi: 10.1007/s00792-018-1023-x. Epub 2018 May 24.

PMID:
29797090
10.

Structure of an Ancient Respiratory System.

Yu H, Wu CH, Schut GJ, Haja DK, Zhao G, Peters JW, Adams MWW, Li H.

Cell. 2018 Jun 14;173(7):1636-1649.e16. doi: 10.1016/j.cell.2018.03.071. Epub 2018 May 10.

PMID:
29754813
11.

On the nature of organic and inorganic centers that bifurcate electrons, coupling exergonic and endergonic oxidation-reduction reactions.

Peters JW, Beratan DN, Schut GJ, Adams MWW.

Chem Commun (Camb). 2018 Apr 19;54(33):4091-4099. doi: 10.1039/c8cc01530a.

PMID:
29624194
12.

The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate.

Poudel S, Giannone RJ, Basen M, Nookaew I, Poole FL 2nd, Kelly RM, Adams MWW, Hettich RL.

Biotechnol Biofuels. 2018 Mar 23;11:80. doi: 10.1186/s13068-018-1076-1. eCollection 2018.

13.

Novel Bioengineered Cassava Expressing an Archaeal Starch Degradation System and a Bacterial ADP-Glucose Pyrophosphorylase for Starch Self-Digestibility and Yield Increase.

Ligaba-Osena A, Jones J, Donkor E, Chandrayan S, Pole F, Wu CH, Vieille C, Adams MWW, Hankoua BB.

Front Plant Sci. 2018 Feb 26;9:192. doi: 10.3389/fpls.2018.00192. eCollection 2018.

14.

Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.

Lee LL, Blumer-Schuette SE, Izquierdo JA, Zurawski JV, Loder AJ, Conway JM, Elkins JG, Podar M, Clum A, Jones PC, Piatek MJ, Weighill DA, Jacobson DA, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02694-17. doi: 10.1128/AEM.02694-17. Print 2018 May 1.

15.

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

He Z, Zhang P, Wu L, Rocha AM, Tu Q, Shi Z, Wu B, Qin Y, Wang J, Yan Q, Curtis D, Ning D, Van Nostrand JD, Wu L, Yang Y, Elias DA, Watson DB, Adams MWW, Fields MW, Alm EJ, Hazen TC, Adams PD, Arkin AP, Zhou J.

MBio. 2018 Feb 20;9(1). pii: e02435-17. doi: 10.1128/mBio.02435-17.

16.

Cluster-Dependent Charge-Transfer Dynamics in Iron-Sulfur Proteins.

Mao Z, Liou SH, Khadka N, Jenney FE Jr, Goodin DB, Seefeldt LC, Adams MWW, Cramer SP, Larsen DS.

Biochemistry. 2018 Feb 13;57(6):978-990. doi: 10.1021/acs.biochem.7b01159. Epub 2018 Jan 24.

PMID:
29303562
17.

Artemether Does Not Turn α Cells into β Cells.

van der Meulen T, Lee S, Noordeloos E, Donaldson CJ, Adams MW, Noguchi GM, Mawla AM, Huising MO.

Cell Metab. 2018 Jan 9;27(1):218-225.e4. doi: 10.1016/j.cmet.2017.10.002. Epub 2017 Nov 2.

PMID:
29103923
18.

Applications of Photogating and Time Resolved Spectroscopy to Mechanistic Studies of Hydrogenases.

Greene BL, Vansuch GE, Chica BC, Adams MWW, Dyer RB.

Acc Chem Res. 2017 Nov 21;50(11):2718-2726. doi: 10.1021/acs.accounts.7b00356. Epub 2017 Oct 30. Review.

PMID:
29083854
19.

H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle.

Berry L, Poudel S, Tokmina-Lukaszewska M, Colman DR, Nguyen DMN, Schut GJ, Adams MWW, Peters JW, Boyd ES, Bothner B.

Biochim Biophys Acta Gen Subj. 2018 Jan;1862(1):9-17. doi: 10.1016/j.bbagen.2017.10.002. Epub 2017 Oct 6.

PMID:
28993252
20.

Functional analysis of the Glucan Degradation Locus (GDL) in Caldicellulosiruptor bescii reveals essential roles of component glycoside hydrolases in plant biomass deconstruction.

Conway JM, McKinley BS, Seals NL, Hernandez D, Khatibi PA, Poudel S, Giannone RJ, Hettich RL, Williams-Rhaesa AM, Lipscomb GL, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2017 Oct 6. pii: AEM.01828-17. doi: 10.1128/AEM.01828-17. [Epub ahead of print]

21.

Advanced water splitting for green hydrogen gas production through complete oxidation of starch by in vitro metabolic engineering.

Kim JE, Kim EJ, Chen H, Wu CH, Adams MWW, Zhang YP.

Metab Eng. 2017 Nov;44:246-252. doi: 10.1016/j.ymben.2017.09.015. Epub 2017 Sep 30.

PMID:
28974378
22.

A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Martinez-Pastor M, Lancaster WA, Tonner PD, Adams MWW, Schmid AK.

Nucleic Acids Res. 2017 Sep 29;45(17):9990-10001. doi: 10.1093/nar/gkx662.

23.

Mechanisms of Chromium and Uranium Toxicity in Pseudomonas stutzeri RCH2 Grown under Anaerobic Nitrate-Reducing Conditions.

Thorgersen MP, Lancaster WA, Ge X, Zane GM, Wetmore KM, Vaccaro BJ, Poole FL 2nd, Younkin AD, Deutschbauer AM, Arkin AP, Wall JD, Adams MWW.

Front Microbiol. 2017 Aug 10;8:1529. doi: 10.3389/fmicb.2017.01529. eCollection 2017.

24.

Impact of growth mode, phase, and rate on the metabolic state of the extremely thermophilic archaeon Pyrococcus furiosus.

Khatibi PA, Chou CJ, Loder AJ, Zurawski JV, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2017 Dec;114(12):2947-2954. doi: 10.1002/bit.26408. Epub 2017 Oct 6.

25.

Defining Electron Bifurcation in the Electron-Transferring Flavoprotein Family.

Garcia Costas AM, Poudel S, Miller AF, Schut GJ, Ledbetter RN, Fixen KR, Seefeldt LC, Adams MWW, Harwood CS, Boyd ES, Peters JW.

J Bacteriol. 2017 Oct 3;199(21). pii: e00440-17. doi: 10.1128/JB.00440-17. Print 2017 Nov 1.

26.

The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5.

Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW.

Front Microbiol. 2017 Jul 12;8:1305. doi: 10.3389/fmicb.2017.01305. eCollection 2017.

27.

Biological iron-sulfur storage in a thioferrate-protein nanoparticle.

Vaccaro BJ, Clarkson SM, Holden JF, Lee DW, Wu CH, Poole Ii FL, Cotelesage JJH, Hackett MJ, Mohebbi S, Sun J, Li H, Johnson MK, George GN, Adams MWW.

Nat Commun. 2017 Jul 20;8:16110. doi: 10.1038/ncomms16110.

28.

Two functionally distinct NADP+-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus.

Nguyen DMN, Schut GJ, Zadvornyy OA, Tokmina-Lukaszewska M, Poudel S, Lipscomb GL, Adams LA, Dinsmore JT, Nixon WJ, Boyd ES, Bothner B, Peters JW, Adams MWW.

J Biol Chem. 2017 Sep 1;292(35):14603-14616. doi: 10.1074/jbc.M117.794172. Epub 2017 Jul 13.

29.

Reduction Potentials of [FeFe]-Hydrogenase Accessory Iron-Sulfur Clusters Provide Insights into the Energetics of Proton Reduction Catalysis.

Artz JH, Mulder DW, Ratzloff MW, Lubner CE, Zadvornyy OA, LeVan AX, Williams SG, Adams MWW, Jones AK, King PW, Peters JW.

J Am Chem Soc. 2017 Jul 19;139(28):9544-9550. doi: 10.1021/jacs.7b02099. Epub 2017 Jul 6.

PMID:
28635269
30.

Bioavailability of Carbohydrate Content in Natural and Transgenic Switchgrasses for the Extreme Thermophile Caldicellulosiruptor bescii.

Zurawski JV, Khatibi PA, Akinosho HO, Straub CT, Compton SH, Conway JM, Lee LL, Ragauskas AJ, Davison BH, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00969-17. doi: 10.1128/AEM.00969-17. Print 2017 Sep 1.

31.

Equilibrium and ultrafast kinetic studies manipulating electron transfer: A short-lived flavin semiquinone is not sufficient for electron bifurcation.

Hoben JP, Lubner CE, Ratzloff MW, Schut GJ, Nguyen DMN, Hempel KW, Adams MWW, King PW, Miller AF.

J Biol Chem. 2017 Aug 25;292(34):14039-14049. doi: 10.1074/jbc.M117.794214. Epub 2017 Jun 14.

32.

Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island.

Antranikian G, Suleiman M, Schäfers C, Adams MWW, Bartolucci S, Blamey JM, Birkeland NK, Bonch-Osmolovskaya E, da Costa MS, Cowan D, Danson M, Forterre P, Kelly R, Ishino Y, Littlechild J, Moracci M, Noll K, Oshima T, Robb F, Rossi M, Santos H, Schönheit P, Sterner R, Thauer R, Thomm M, Wiegel J, Stetter KO.

Extremophiles. 2017 Jul;21(4):733-742. doi: 10.1007/s00792-017-0938-y. Epub 2017 May 10.

PMID:
28493148
33.

Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Poole FL 2nd, Dinsmore JT, Lipscomb GL, Rubinstein GM, Scott IM, Conway JM, Lee LL, Khatibi PA, Kelly RM, Adams MWW.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00444-17. doi: 10.1128/AEM.00444-17. Print 2017 Jul 15.

34.

Systems biology guided by XCMS Online metabolomics.

Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G.

Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. No abstract available.

35.

Mechanistic insights into energy conservation by flavin-based electron bifurcation.

Lubner CE, Jennings DP, Mulder DW, Schut GJ, Zadvornyy OA, Hoben JP, Tokmina-Lukaszewska M, Berry L, Nguyen DM, Lipscomb GL, Bothner B, Jones AK, Miller AF, King PW, Adams MWW, Peters JW.

Nat Chem Biol. 2017 Jun;13(6):655-659. doi: 10.1038/nchembio.2348. Epub 2017 Apr 10.

PMID:
28394885
36.

Virgin Beta Cells Persist throughout Life at a Neogenic Niche within Pancreatic Islets.

van der Meulen T, Mawla AM, DiGruccio MR, Adams MW, Nies V, Dólleman S, Liu S, Ackermann AM, Cáceres E, Hunter AE, Kaestner KH, Donaldson CJ, Huising MO.

Cell Metab. 2017 Apr 4;25(4):911-926.e6. doi: 10.1016/j.cmet.2017.03.017.

37.

Reverse gyrase is essential for microbial growth at 95 °C.

Lipscomb GL, Hahn EM, Crowley AT, Adams MWW.

Extremophiles. 2017 May;21(3):603-608. doi: 10.1007/s00792-017-0929-z. Epub 2017 Mar 22.

PMID:
28331998
38.

Extremely thermophilic energy metabolisms: biotechnological prospects.

Straub CT, Zeldes BM, Schut GJ, Adams MW, Kelly RM.

Curr Opin Biotechnol. 2017 Jun;45:104-112. doi: 10.1016/j.copbio.2017.02.016. Epub 2017 Mar 16. Review.

PMID:
28319854
39.

SurR is a master regulator of the primary electron flow pathways in the order Thermococcales.

Lipscomb GL, Schut GJ, Scott RA, Adams MWW.

Mol Microbiol. 2017 Jun;104(5):869-881. doi: 10.1111/mmi.13668. Epub 2017 Apr 18.

PMID:
28295726
40.

Electricity generation by Pyrococcus furiosus in microbial fuel cells operated at 90°C.

Sekar N, Wu CH, Adams MWW, Ramasamy RP.

Biotechnol Bioeng. 2017 Jul;114(7):1419-1427. doi: 10.1002/bit.26271. Epub 2017 Mar 10.

PMID:
28218405
41.

Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms.

Counts JA, Zeldes BM, Lee LL, Straub CT, Adams MWW, Kelly RM.

Wiley Interdiscip Rev Syst Biol Med. 2017 May;9(3). doi: 10.1002/wsbm.1377. Epub 2017 Feb 16. Review.

42.

Ethanol production by the hyperthermophilic archaeon Pyrococcus furiosus by expression of bacterial bifunctional alcohol dehydrogenases.

Keller MW, Lipscomb GL, Nguyen DM, Crowley AT, Schut GJ, Scott I, Kelly RM, Adams MWW.

Microb Biotechnol. 2017 Nov;10(6):1535-1545. doi: 10.1111/1751-7915.12486. Epub 2017 Feb 14.

43.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

44.

The renaissance of life near the boiling point - at last, genetics and metabolic engineering.

Adams MW, Kelly RM.

Microb Biotechnol. 2017 Jan;10(1):37-39. doi: 10.1111/1751-7915.12463. Epub 2016 Dec 8.

45.

A Highly Expressed High-Molecular-Weight S-Layer Complex of Pelosinus sp. Strain UFO1 Binds Uranium.

Thorgersen MP, Lancaster WA, Rajeev L, Ge X, Vaccaro BJ, Poole FL, Arkin AP, Mukhopadhyay A, Adams MW.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e03044-16. doi: 10.1128/AEM.03044-16. Print 2017 Feb 15.

46.

Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation.

Guschinskaya N, Brunel R, Tourte M, Lipscomb GL, Adams MW, Oger P, Charpentier X.

Sci Rep. 2016 Nov 8;6:36711. doi: 10.1038/srep36711.

47.

Ancillary contributions of heterologous biotin protein ligase and carbonic anhydrase for CO2 incorporation into 3-hydroxypropionate by metabolically engineered Pyrococcus furiosus.

Lian H, Zeldes BM, Lipscomb GL, Hawkins AB, Han Y, Loder AJ, Nishiyama D, Adams MW, Kelly RM.

Biotechnol Bioeng. 2016 Dec;113(12):2652-2660. doi: 10.1002/bit.26033. Epub 2016 Jun 30.

48.

Reaction kinetic analysis of the 3-hydroxypropionate/4-hydroxybutyrate CO2 fixation cycle in extremely thermoacidophilic archaea.

Loder AJ, Han Y, Hawkins AB, Lian H, Lipscomb GL, Schut GJ, Keller MW, Adams MWW, Kelly RM.

Metab Eng. 2016 Nov;38:446-463. doi: 10.1016/j.ymben.2016.10.009. Epub 2016 Oct 19.

49.

Exceptionally High Rates of Biological Hydrogen Production by Biomimetic In Vitro Synthetic Enzymatic Pathways.

Kim EJ, Wu CH, Adams MW, Zhang YP.

Chemistry. 2016 Nov 2;22(45):16047-16051. doi: 10.1002/chem.201604197. Epub 2016 Sep 30.

PMID:
27605312
50.

Glutamate Gated Proton-Coupled Electron Transfer Activity of a [NiFe]-Hydrogenase.

Greene BL, Vansuch GE, Wu CH, Adams MW, Dyer RB.

J Am Chem Soc. 2016 Oct 5;138(39):13013-13021. Epub 2016 Sep 22.

PMID:
27617712

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