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A mutation in mouse Krüppel-like factor 15 alters the gut microbiome and response to obesogenic diet.

Svenson KL, Long LL, Ciciotte SL, Adams MD.

PLoS One. 2019 Sep 25;14(9):e0222536. doi: 10.1371/journal.pone.0222536. eCollection 2019.


Exposure to ultrafine particulate air pollution in the school commute: Examining low-dose route optimization with terrain-enforced dosage modelling.

Elford S, Adams MD.

Environ Res. 2019 Nov;178:108674. doi: 10.1016/j.envres.2019.108674. Epub 2019 Aug 17.


Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118.

Ramirez MS, Penwell WF, Traglia GM, Zimbler DL, Gaddy JA, Nikolaidis N, Arivett BA, Adams MD, Bonomo RA, Actis LA, Tolmasky ME.

Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019.


Risk Factors for Acute Ischemic Stroke Caused by Anterior Large Vessel Occlusion.

Hendrix P, Sofoluke N, Adams MD, Kunaprayoon S, Zand R, Kolinovsky AN, Person TN, Gupta M, Goren O, Schirmer CM, Rost NS, Faber JE, Griessenauer CJ.

Stroke. 2019 May;50(5):1074-1080. doi: 10.1161/STROKEAHA.118.023917.


Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire.

Adams MD, Wright MS, Karichu JK, Venepally P, Fouts DE, Chan AP, Richter SS, Jacobs MR, Bonomo RA.

mBio. 2019 Mar 26;10(2). pii: e00356-19. doi: 10.1128/mBio.00356-19.


Antibiotic collateral sensitivity is contingent on the repeatability of evolution.

Nichol D, Rutter J, Bryant C, Hujer AM, Lek S, Adams MD, Jeavons P, Anderson ARA, Bonomo RA, Scott JG.

Nat Commun. 2019 Jan 18;10(1):334. doi: 10.1038/s41467-018-08098-6.


The pial vasculature of the mouse develops according to a sensory-independent program.

Adams MD, Winder AT, Blinder P, Drew PJ.

Sci Rep. 2018 Jun 29;8(1):9860. doi: 10.1038/s41598-018-27910-3.


DNA assembly with error correction on a droplet digital microfluidics platform.

Khilko Y, Weyman PD, Glass JI, Adams MD, McNeil MA, Griffin PB.

BMC Biotechnol. 2018 Jun 1;18(1):37. doi: 10.1186/s12896-018-0439-9.


Genomic Epidemiology of Global Carbapenemase-Producing Enterobacter spp., 2008-2014.

Peirano G, Matsumura Y, Adams MD, Bradford P, Motyl M, Chen L, Kreiswirth BN, Pitout JDD.

Emerg Infect Dis. 2018 Jun;24(6):1010-1019. doi: 10.3201/eid2406.171648.


Iron Acquisition and Siderophore Release by Carbapenem-Resistant Sequence Type 258 Klebsiella pneumoniae.

Holden VI, Wright MS, Houle S, Collingwood A, Dozois CM, Adams MD, Bachman MA.

mSphere. 2018 Apr 18;3(2). pii: e00125-18. doi: 10.1128/mSphere.00125-18. Print 2018 Apr 25.


The health impacts of weekday traffic: A health risk assessment of PM2.5 emissions during congested periods.

Requia WJ, Higgins CD, Adams MD, Mohamed M, Koutrakis P.

Environ Int. 2018 Feb;111:164-176. doi: 10.1016/j.envint.2017.11.025. Epub 2017 Dec 20.


Global Association of Air Pollution and Cardiorespiratory Diseases: A Systematic Review, Meta-Analysis, and Investigation of Modifier Variables.

Requia WJ, Adams MD, Arain A, Papatheodorou S, Koutrakis P, Mahmoud M.

Am J Public Health. 2018 Apr;108(S2):S123-S130. doi: 10.2105/AJPH.2017.303839. Epub 2017 Oct 26.


An Analysis of the Epidemic of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm".

Rojas LJ, Weinstock GM, De La Cadena E, Diaz L, Rios R, Hanson BM, Brown JS, Vats P, Phillips DS, Nguyen H, Hujer KM, Correa A, Adams MD, Perez F, Sodergren E, Narechania A, Planet PJ, Villegas MV, Bonomo RA, Arias CA.

J Infect Dis. 2017 Dec 27;217(1):82-92. doi: 10.1093/infdis/jix524.


Nosocomial Outbreak of Extensively Drug-Resistant Acinetobacter baumannii Isolates Containing blaOXA-237 Carried on a Plasmid.

Hujer AM, Higgins PG, Rudin SD, Buser GL, Marshall SH, Xanthopoulou K, Seifert H, Rojas LJ, Domitrovic TN, Cassidy PM, Cunningham MC, Vega R, Furuno JP, Pfeiffer CD, Beldavs ZG, Wright MS, Jacobs MR, Adams MD, Bonomo RA.

Antimicrob Agents Chemother. 2017 Oct 24;61(11). pii: e00797-17. doi: 10.1128/AAC.00797-17. Print 2017 Nov.


Failure to Communicate: Transmission of Extensively Drug-Resistant bla OXA-237-Containing Acinetobacter baumannii-Multiple Facilities in Oregon, 2012-2014.

Buser GL, Cassidy PM, Cunningham MC, Rudin S, Hujer AM, Vega R, Furuno JP, Marshall SH, Higgins PG, Jacobs MR, Wright MS, Adams MD, Bonomo RA, Pfeiffer CD, Beldavs ZG.

Infect Control Hosp Epidemiol. 2017 Nov;38(11):1335-1341. doi: 10.1017/ice.2017.189. Epub 2017 Sep 5.


Corrected Genome Sequence of Acinetobacter baumannii Strain AB0057, an Antibiotic-Resistant Isolate from Lineage 1 of Global Clone 1.

Hamidian M, Venepally P, Hall RM, Adams MD.

Genome Announc. 2017 Aug 31;5(35). pii: e00836-17. doi: 10.1128/genomeA.00836-17.


Spatio-temporal analysis of particulate matter intake fractions for vehicular emissions: Hourly variation by micro-environments in the Greater Toronto and Hamilton Area, Canada.

Requia WJ, Adams MD, Arain A, Koutrakis P, Lee WC, Ferguson M.

Sci Total Environ. 2017 Dec 1;599-600:1813-1822. doi: 10.1016/j.scitotenv.2017.05.134. Epub 2017 May 20.


Genomic epidemiology of global VIM-producing Enterobacteriaceae.

Matsumura Y, Peirano G, Devinney R, Bradford PA, Motyl MR, Adams MD, Chen L, Kreiswirth B, Pitout JDD.

J Antimicrob Chemother. 2017 Aug 1;72(8):2249-2258. doi: 10.1093/jac/dkx148.


NDM-5 and OXA-181 Beta-Lactamases, a Significant Threat Continues To Spread in the Americas.

Rojas LJ, Hujer AM, Rudin SD, Wright MS, Domitrovic TN, Marshall SH, Hujer KM, Richter SS, Cober E, Perez F, Adams MD, van Duin D, Bonomo RA.

Antimicrob Agents Chemother. 2017 Jun 27;61(7). pii: e00454-17. doi: 10.1128/AAC.00454-17. Print 2017 Jul.


Quantitative assessment of insertion sequence impact on bacterial genome architecture.

Adams MD, Bishop B, Wright MS.

Microb Genom. 2016 Jul 18;2(7):e000062. doi: 10.1099/mgen.0.000062. eCollection 2016 Jul.


Transcriptome Remodeling of Acinetobacter baumannii during Infection and Treatment.

Wright MS, Jacobs MR, Bonomo RA, Adams MD.

mBio. 2017 Mar 7;8(2). pii: e02193-16. doi: 10.1128/mBio.02193-16.


Assessment of Insertion Sequence Mobilization as an Adaptive Response to Oxidative Stress in Acinetobacter baumannii Using IS-seq.

Wright MS, Mountain S, Beeri K, Adams MD.

J Bacteriol. 2017 Apr 11;199(9). pii: e00833-16. doi: 10.1128/JB.00833-16. Print 2017 May 1.


Transcriptome analysis reveals rod/cone photoreceptor specific signatures across mammalian retinas.

Mustafi D, Kevany BM, Bai X, Golczak M, Adams MD, Wynshaw-Boris A, Palczewski K.

Hum Mol Genet. 2016 Oct 15;25(20):4376-4388. doi: 10.1093/hmg/ddw268.


Association of PM2.5 with diabetes, asthma, and high blood pressure incidence in Canada: A spatiotemporal analysis of the impacts of the energy generation and fuel sales.

Requia WJ, Adams MD, Koutrakis P.

Sci Total Environ. 2017 Apr 15;584-585:1077-1083. doi: 10.1016/j.scitotenv.2017.01.166. Epub 2017 Feb 4.


Global Molecular Epidemiology of IMP-Producing Enterobacteriaceae.

Matsumura Y, Peirano G, Motyl MR, Adams MD, Chen L, Kreiswirth B, DeVinney R, Pitout JD.

Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e02729-16. doi: 10.1128/AAC.02729-16. Print 2017 Apr.


Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

Chavda KD, Chen L, Fouts DE, Sutton G, Brinkac L, Jenkins SG, Bonomo RA, Adams MD, Kreiswirth BN.

mBio. 2016 Dec 13;7(6). pii: e02093-16. doi: 10.1128/mBio.02093-16.


Spatiotemporal analysis of traffic emissions in over 5000 municipal districts in Brazil.

Réquia WJ, Koutrakis P, Roig HL, Adams MD.

J Air Waste Manag Assoc. 2016 Dec;66(12):1284-1293.


Mapping distance-decay of cardiorespiratory disease risk related to neighborhood environments.

Requia WJ, Roig HL, Adams MD, Zanobetti A, Koutrakis P.

Environ Res. 2016 Nov;151:203-215. doi: 10.1016/j.envres.2016.07.038. Epub 2016 Aug 4.


Genetic Dissection of the Type VI Secretion System in Acinetobacter and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis.

Weber BS, Hennon SW, Wright MS, Scott NE, de Berardinis V, Foster LJ, Ayala JA, Adams MD, Feldman MF.

mBio. 2016 Oct 11;7(5). pii: e01253-16. doi: 10.1128/mBio.01253-16.


Association between vehicular emissions and cardiorespiratory disease risk in Brazil and its variation by spatial clustering of socio-economic factors.

Requia WJ, Koutrakis P, Roig HL, Adams MD, Santos CM.

Environ Res. 2016 Oct;150:452-460. doi: 10.1016/j.envres.2016.06.027. Epub 2016 Jul 6.


Initial Assessment of the Molecular Epidemiology of blaNDM-1 in Colombia.

Rojas LJ, Wright MS, De La Cadena E, Motoa G, Hujer KM, Villegas MV, Adams MD, Bonomo RA.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4346-50. doi: 10.1128/AAC.03072-15. Print 2016 Jul.


Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment.

Wright MS, Iovleva A, Jacobs MR, Bonomo RA, Adams MD.

Genome Med. 2016 Mar 3;8(1):26. doi: 10.1186/s13073-016-0279-y.


A Germline Variant on Chromosome 4q31.1 Associates with Susceptibility to Developing Colon Cancer Metastasis.

Markowitz SD, Nock NL, Schmit SL, Stadler ZK, Joseph V, Zhang L, Willis JE, Scacheri P, Veigl M, Adams MD, Raskin L, Sullivan JF, Stratton K, Shia J, Ellis N, Rennert HS, Manschreck C, Li L, Offit K, Elston RC, Rennert G, Gruber SB.

PLoS One. 2016 Jan 11;11(1):e0146435. doi: 10.1371/journal.pone.0146435. eCollection 2016.


Mapping real-time air pollution health risk for environmental management: Combining mobile and stationary air pollution monitoring with neural network models.

Adams MD, Kanaroglou PS.

J Environ Manage. 2016 Mar 1;168:133-41. doi: 10.1016/j.jenvman.2015.12.012. Epub 2015 Dec 17.


The Sequence of the Human Genome.

Venter JC, Smith HO, Adams MD.

Clin Chem. 2015 Sep;61(9):1207-8. doi: 10.1373/clinchem.2014.237016. Epub 2015 Jul 16. No abstract available.


Erratum for "New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis".

Wright MS, Haft DH, Harkins DM, Perez F, Hujer KM, Bajaksouzian S, Benard MF, Jacobs MR, Bonomo RA, Adams MD.

mBio. 2015 Jun 4;6(3):e00585. doi: 10.1128/mBio.00585-15. No abstract available.


Reply to Ashktorab et al.: Mutational landscape of colon cancers in African Americans.

Guda K, Veigl ML, Varadan V, Nosrati A, Ravi L, Lutterbaugh J, Beard L, Willson JK, Sedwick WD, Wang ZJ, Molyneaux N, Miron A, Adams MD, Elston RC, Markowitz SD, Willis JE.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):E2853. doi: 10.1073/pnas.1505059112. Epub 2015 May 4. No abstract available.


SISPA-Seq for rapid whole genome surveys of bacterial isolates.

Wright MS, Stockwell TB, Beck E, Busam DA, Bajaksouzian S, Jacobs MR, Bonomo RA, Adams MD.

Infect Genet Evol. 2015 Jun;32:191-8. doi: 10.1016/j.meegid.2015.03.018. Epub 2015 Mar 19.


RASA3 is a critical inhibitor of RAP1-dependent platelet activation.

Stefanini L, Paul DS, Robledo RF, Chan ER, Getz TM, Campbell RA, Kechele DO, Casari C, Piatt R, Caron KM, Mackman N, Weyrich AS, Parrott MC, Boulaftali Y, Adams MD, Peters LL, Bergmeier W.

J Clin Invest. 2015 Apr;125(4):1419-32. doi: 10.1172/JCI77993. Epub 2015 Feb 23.


Novel recurrently mutated genes in African American colon cancers.

Guda K, Veigl ML, Varadan V, Nosrati A, Ravi L, Lutterbaugh J, Beard L, Willson JK, Sedwick WD, Wang ZJ, Molyneaux N, Miron A, Adams MD, Elston RC, Markowitz SD, Willis JE.

Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):1149-54. doi: 10.1073/pnas.1417064112. Epub 2015 Jan 12.


Genomic and transcriptomic analyses of colistin-resistant clinical isolates of Klebsiella pneumoniae reveal multiple pathways of resistance.

Wright MS, Suzuki Y, Jones MB, Marshall SH, Rudin SD, van Duin D, Kaye K, Jacobs MR, Bonomo RA, Adams MD.

Antimicrob Agents Chemother. 2015 Jan;59(1):536-43. doi: 10.1128/AAC.04037-14. Epub 2014 Nov 10.


Host fate is rapidly determined by innate effector-microbial interactions during Acinetobacter baumannii bacteremia.

Bruhn KW, Pantapalangkoor P, Nielsen T, Tan B, Junus J, Hujer KM, Wright MS, Bonomo RA, Adams MD, Chen W, Spellberg B.

J Infect Dis. 2015 Apr 15;211(8):1296-305. doi: 10.1093/infdis/jiu593. Epub 2014 Nov 5.


Severe vascular calcification and tumoral calcinosis in a family with hyperphosphatemia: a fibroblast growth factor 23 mutation identified by exome sequencing.

Shah A, Miller CJ, Nast CC, Adams MD, Truitt B, Tayek JA, Tong L, Mehtani P, Monteon F, Sedor JR, Clinkenbeard EL, White K, Mehrotra R, LaPage J, Dickson P, Adler SG, Iyengar SK.

Nephrol Dial Transplant. 2014 Dec;29(12):2235-43. doi: 10.1093/ndt/gfu324. Epub 2014 Nov 5.


Epithelial innate immune response to Acinetobacter baumannii challenge.

Feng Z, Jia X, Adams MD, Ghosh SK, Bonomo RA, Weinberg A.

Infect Immun. 2014 Nov;82(11):4458-65. doi: 10.1128/IAI.01897-14. Epub 2014 Aug 11.


Population structure of KPC-producing Klebsiella pneumoniae isolates from midwestern U.S. hospitals.

Wright MS, Perez F, Brinkac L, Jacobs MR, Kaye K, Cober E, van Duin D, Marshall SH, Hujer AM, Rudin SD, Hujer KM, Bonomo RA, Adams MD.

Antimicrob Agents Chemother. 2014 Aug;58(8):4961-5. doi: 10.1128/AAC.00125-14. Epub 2014 Jun 9.


Negative elongation factor is required for the maintenance of proviral latency but does not induce promoter-proximal pausing of RNA polymerase II on the HIV long terminal repeat.

Jadlowsky JK, Wong JY, Graham AC, Dobrowolski C, Devor RL, Adams MD, Fujinaga K, Karn J.

Mol Cell Biol. 2014 Jun;34(11):1911-28. doi: 10.1128/MCB.01013-13. Epub 2014 Mar 17.


New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis.

Wright MS, Haft DH, Harkins DM, Perez F, Hujer KM, Bajaksouzian S, Benard MF, Jacobs MR, Bonomo RA, Adams MD.

mBio. 2014 Jan 21;5(1):e00963-13. doi: 10.1128/mBio.00963-13. Erratum in: MBio. 2015;6(3):e00585.


Pharmacological evidence for an abstinence-induced switch in 5-HT1B receptor modulation of cocaine self-administration and cocaine-seeking behavior.

Pentkowski NS, Harder BG, Brunwasser SJ, Bastle RM, Peartree NA, Yanamandra K, Adams MD, Der-Ghazarian T, Neisewander JL.

ACS Chem Neurosci. 2014 Mar 19;5(3):168-76. doi: 10.1021/cn400155t. Epub 2014 Jan 15.


A metagenomic framework for the study of airborne microbial communities.

Yooseph S, Andrews-Pfannkoch C, Tenney A, McQuaid J, Williamson S, Thiagarajan M, Brami D, Zeigler-Allen L, Hoffman J, Goll JB, Fadrosh D, Glass J, Adams MD, Friedman R, Venter JC.

PLoS One. 2013 Dec 11;8(12):e81862. doi: 10.1371/journal.pone.0081862. eCollection 2013.

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