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Items: 15


From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain.

Vopalensky P, Tosches MA, Achim K, Handberg-Thorsager M, Arendt D.

BMC Biol. 2019 Oct 22;17(1):81. doi: 10.1186/s12915-019-0705-x.


Evolution of neuronal types and families.

Arendt D, Bertucci PY, Achim K, Musser JM.

Curr Opin Neurobiol. 2019 Jun;56:144-152. doi: 10.1016/j.conb.2019.01.022. Epub 2019 Mar 1. Review.


Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body.

Achim K, Eling N, Vergara HM, Bertucci PY, Musser J, Vopalensky P, Brunet T, Collier P, Benes V, Marioni JC, Arendt D.

Mol Biol Evol. 2018 May 1;35(5):1047-1062. doi: 10.1093/molbev/msx336.


Spatial Transcriptomics: Constructing a Single-Cell Resolution Transcriptome-Wide Expression Atlas.

Achim K, Vergara HM, Pettit JB.

Methods Mol Biol. 2018;1649:111-125. doi: 10.1007/978-1-4939-7213-5_7.


Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii.

Vergara HM, Bertucci PY, Hantz P, Tosches MA, Achim K, Vopalensky P, Arendt D.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5878-5885. doi: 10.1073/pnas.1610602114.


Gata2 and Gata3 regulate the differentiation of serotonergic and glutamatergic neuron subtypes of the dorsal raphe.

Haugas M, Tikker L, Achim K, Salminen M, Partanen J.

Development. 2016 Dec 1;143(23):4495-4508. Epub 2016 Oct 27.


High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin.

Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC.

Nat Biotechnol. 2015 May;33(5):503-9. doi: 10.1038/nbt.3209. Epub 2015 Apr 13.


Single Cell Genomics meeting in Stockholm: from single cells to cell types.

Scialdone A, Achim K, Marioni JC.

Genome Biol. 2014 Oct 18;15(10):496. doi: 10.1186/s13059-014-0496-x.


Identifying cell types from spatially referenced single-cell expression datasets.

Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J.

PLoS Comput Biol. 2014 Sep 25;10(9):e1003824. doi: 10.1371/journal.pcbi.1003824. eCollection 2014 Sep.


Structural evolution of cell types by step-wise assembly of cellular modules.

Achim K, Arendt D.

Curr Opin Genet Dev. 2014 Aug;27:102-8. doi: 10.1016/j.gde.2014.05.001. Epub 2014 Jul 5. Review.


Mechanisms regulating GABAergic neuron development.

Achim K, Salminen M, Partanen J.

Cell Mol Life Sci. 2014 Apr;71(8):1395-415. doi: 10.1007/s00018-013-1501-3. Epub 2013 Nov 7. Review.


The role of Tal2 and Tal1 in the differentiation of midbrain GABAergic neuron precursors.

Achim K, Peltopuro P, Lahti L, Tsai HH, Zachariah A, Astrand M, Salminen M, Rowitch D, Partanen J.

Biol Open. 2013 Aug 9;2(10):990-7. doi: 10.1242/bio.20135041. eCollection 2013.


Molecular regulation of GABAergic neuron differentiation and diversity in the developing midbrain.

Lahti L, Achim K, Partanen J.

Acta Physiol (Oxf). 2013 Apr;207(4):616-27. doi: 10.1111/apha.12062. Epub 2013 Feb 8. Review.


Transcriptional regulatory mechanisms underlying the GABAergic neuron fate in different diencephalic prosomeres.

Virolainen SM, Achim K, Peltopuro P, Salminen M, Partanen J.

Development. 2012 Oct;139(20):3795-805.


Distinct developmental origins and regulatory mechanisms for GABAergic neurons associated with dopaminergic nuclei in the ventral mesodiencephalic region.

Achim K, Peltopuro P, Lahti L, Li J, Salminen M, Partanen J.

Development. 2012 Jul;139(13):2360-70. doi: 10.1242/dev.076380. Epub 2012 May 23.

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