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Domestication of Temperate and Coastal Hybrids with Distinct Ancestral Gene Selection in Octoploid Strawberry.

Hardigan MA, Poorten TJ, Acharya CB, Cole GS, Hummer KE, Bassil N, Edger PP, Knapp SJ.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2018.07.0049.


Freezing of all embryos in in vitro fertilization is beneficial in high responders, but not intermediate and low responders: an analysis of 82,935 cycles from the Society for Assisted Reproductive Technology registry.

Acharya KS, Acharya CR, Bishop K, Harris B, Raburn D, Muasher SJ.

Fertil Steril. 2018 Oct;110(5):880-887. doi: 10.1016/j.fertnstert.2018.05.024. Epub 2018 Aug 21.


APRIL signaling via TACI mediates immunosuppression by T regulatory cells in multiple myeloma: therapeutic implications.

Tai YT, Lin L, Xing L, Cho SF, Yu T, Acharya C, Wen K, Hsieh PA, Dulos J, van Elsas A, Munshi N, Richardson P, Anderson KC.

Leukemia. 2019 Feb;33(2):426-438. doi: 10.1038/s41375-018-0242-6. Epub 2018 Aug 22.


Periodontal therapy favorably modulates the oral-gut-hepatic axis in cirrhosis.

Bajaj JS, Matin P, White MB, Fagan A, Deeb JG, Acharya C, Dalmet SS, Sikaroodi M, Gillevet PM, Sahingur SE.

Am J Physiol Gastrointest Liver Physiol. 2018 Nov 1;315(5):G824-G837. doi: 10.1152/ajpgi.00230.2018. Epub 2018 Aug 17.


A Population Pharmacokinetic-Pharmacodynamic Model of Pegfilgrastim.

Brekkan A, Lopez-Lazaro L, Yngman G, Plan EL, Acharya C, Hooker AC, Kankanwadi S, Karlsson MO.

AAPS J. 2018 Aug 15;20(5):91. doi: 10.1208/s12248-018-0249-y.


Altered Microbiome in Patients With Cirrhosis and Complications.

Acharya C, Bajaj JS.

Clin Gastroenterol Hepatol. 2019 Jan;17(2):307-321. doi: 10.1016/j.cgh.2018.08.008. Epub 2018 Aug 9. Review.


Responses exhibited by various microbial groups relevant to uranium exposure.

Kolhe N, Zinjarde S, Acharya C.

Biotechnol Adv. 2018 Nov 15;36(7):1828-1846. doi: 10.1016/j.biotechadv.2018.07.002. Epub 2018 Jul 12. Review.


Current Management of Hepatic Encephalopathy.

Acharya C, Bajaj JS.

Am J Gastroenterol. 2018 Nov;113(11):1600-1612. doi: 10.1038/s41395-018-0179-4. No abstract available.


Uranium biomineralization induced by a metal tolerant Serratia strain under acid, alkaline and irradiated conditions.

Chandwadkar P, Misra HS, Acharya C.

Metallomics. 2018 Aug 15;10(8):1078-1088. doi: 10.1039/c8mt00061a.


Patient Acceptance of Lactulose Varies Between Indian and American Cohorts: Implications for Comparing and Designing Global Hepatic Encephalopathy Trials.

Rathi S, Fagan A, Wade JB, Chopra M, White MB, Ganapathy D, Acharya C, Dhiman RK, Bajaj JS.

J Clin Exp Hepatol. 2018 Jun;8(2):109-115. doi: 10.1016/j.jceh.2017.11.010. Epub 2017 Dec 2.


Proton Pump Inhibitor Initiation and Withdrawal affects Gut Microbiota and Readmission Risk in Cirrhosis.

Bajaj JS, Acharya C, Fagan A, White MB, Gavis E, Heuman DM, Hylemon PB, Fuchs M, Puri P, Schubert ML, Sanyal AJ, Sterling RK, Stravitz TR, Siddiqui MS, Luketic V, Lee H, Sikaroodi M, Gillevet PM.

Am J Gastroenterol. 2018 Aug;113(8):1177-1186. doi: 10.1038/s41395-018-0085-9. Epub 2018 Jun 6.


Hypocalcemia and bone mineral density changes following denosumab treatment in end-stage renal disease patients: a meta-analysis of observational studies.

Thongprayoon C, Acharya P, Acharya C, Chenbhanich J, Bathini T, Boonpheng B, Sharma K, Wijarnpreecha K, Ungprasert P, Gonzalez Suarez ML, Cheungpasitporn W.

Osteoporos Int. 2018 Aug;29(8):1737-1745. doi: 10.1007/s00198-018-4533-6. Epub 2018 Apr 30. Review.


Neutrophil-to-Lymphocyte Ratio Associates Independently With Mortality in Hospitalized Patients With Cirrhosis.

Rice J, Dodge JL, Bambha KM, Bajaj JS, Reddy KR, Gralla J, Ganapathy D, Mitrani R, Reuter B, Palecki J, Acharya C, Shaw J, Burton JR, Biggins SW.

Clin Gastroenterol Hepatol. 2018 Nov;16(11):1786-1791.e1. doi: 10.1016/j.cgh.2018.04.045. Epub 2018 Apr 26.


Editorial: patient-reported outcomes in chronic HCV-a PROMISing approach to an ongoing problem.

Acharya C, Bajaj JS.

Aliment Pharmacol Ther. 2018 May;47(9):1319-1320. doi: 10.1111/apt.14585. No abstract available.


NmtA, a novel metallothionein of Anabaena sp. strain PCC 7120 imparts protection against cadmium stress but not oxidative stress.

T V D, Chandwadkar P, Acharya C.

Aquat Toxicol. 2018 Jun;199:152-161. doi: 10.1016/j.aquatox.2018.03.035. Epub 2018 Mar 30.


Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry.

Pincot DDA, Poorten TJ, Hardigan MA, Harshman JM, Acharya CB, Cole GS, Gordon TR, Stueven M, Edger PP, Knapp SJ.

G3 (Bethesda). 2018 May 4;8(5):1817-1828. doi: 10.1534/g3.118.200129.


Gut microbial RNA and DNA analysis predicts hospitalizations in cirrhosis.

Bajaj JS, Thacker LR, Fagan A, White MB, Gavis EA, Hylemon PB, Brown R, Acharya C, Heuman DM, Fuchs M, Dalmet S, Sikaroodi M, Gillevet PM.

JCI Insight. 2018 Mar 8;3(5). pii: 98019. doi: 10.1172/jci.insight.98019. [Epub ahead of print]


Diet affects gut microbiota and modulates hospitalization risk differentially in an international cirrhosis cohort.

Bajaj JS, Idilman R, Mabudian L, Hood M, Fagan A, Turan D, White MB, Karakaya F, Wang J, Atalay R, Hylemon PB, Gavis EA, Brown R, Thacker LR, Acharya C, Heuman DM, Sikaroodi M, Gillevet PM.

Hepatology. 2018 Jul;68(1):234-247. doi: 10.1002/hep.29791. Epub 2018 May 10.


Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ.

Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124.


Mapping eQTL by leveraging multiple tissues and DNA methylation.

Acharya CR, Owzar K, Allen AS.

BMC Bioinformatics. 2017 Oct 18;18(1):455. doi: 10.1186/s12859-017-1856-9.


Beta-blockers in hospitalised patients with cirrhosis and ascites: mortality and factors determining discontinuation and reinitiation.

Bhutta AQ, Garcia-Tsao G, Reddy KR, Tandon P, Wong F, O'Leary JG, Acharya C, Banerjee D, Abraldes JG, Jones TM, Shaw J, Deng Y, Ciarleglio M, Bajaj JS.

Aliment Pharmacol Ther. 2018 Jan;47(1):78-85. doi: 10.1111/apt.14366. Epub 2017 Oct 9.


Microbiota, cirrhosis, and the emerging oral-gut-liver axis.

Acharya C, Sahingur SE, Bajaj JS.

JCI Insight. 2017 Oct 5;2(19). pii: 94416. doi: 10.1172/jci.insight.94416. [Epub ahead of print] Review.


Overt hepatic encephalopathy impairs learning on the EncephalApp stroop which is reversible after liver transplantation.

Acharya C, Wade JB, Fagan A, White M, Gavis E, Ganapathy D, Gilles H, Heuman DM, Bajaj JS.

Liver Transpl. 2017 Nov;23(11):1396-1403. doi: 10.1002/lt.24864.


The patient buddy app can potentially prevent hepatic encephalopathy-related readmissions.

Ganapathy D, Acharya C, Lachar J, Patidar K, Sterling RK, White MB, Ignudo C, Bommidi S, DeSoto J, Thacker LR, Matherly S, Shaw J, Siddiqui MS, Puri P, Sanyal AJ, Luketic V, Lee H, Stravitz RT, Bajaj JS.

Liver Int. 2017 Dec;37(12):1843-1851. doi: 10.1111/liv.13494. Epub 2017 Jul 5.


No Association Between Quick Sequential Organ Failure Assessment and Outcomes of Patients With Cirrhosis and Infections.

Patidar KR, Shaw J, Acharya C, Thacker LR, White MB, Ganapathy D, Fagan A, Gavis EA, Bajaj JS.

Clin Gastroenterol Hepatol. 2017 Nov;15(11):1803-1804. doi: 10.1016/j.cgh.2017.05.033. Epub 2017 May 25. No abstract available.


Unusual Versatility of the Filamentous, Diazotrophic Cyanobacterium Anabaena torulosa Revealed for Its Survival during Prolonged Uranium Exposure.

Acharya C, Chandwadkar P, Nayak C.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e03356-16. doi: 10.1128/AEM.03356-16. Print 2017 May 1.


Targeting CD38 Suppresses Induction and Function of T Regulatory Cells to Mitigate Immunosuppression in Multiple Myeloma.

Feng X, Zhang L, Acharya C, An G, Wen K, Qiu L, Munshi NC, Tai YT, Anderson KC.

Clin Cancer Res. 2017 Aug 1;23(15):4290-4300. doi: 10.1158/1078-0432.CCR-16-3192. Epub 2017 Mar 1.


A novel integrative risk index of papillary thyroid cancer progression combining genomic alterations and clinical factors.

Cheng Q, Li X, Acharya CR, Hyslop T, Sosa JA.

Oncotarget. 2017 Mar 7;8(10):16690-16703. doi: 10.18632/oncotarget.15128.


Gut Microbiota and Complications of Liver Disease.

Acharya C, Bajaj JS.

Gastroenterol Clin North Am. 2017 Mar;46(1):155-169. doi: 10.1016/j.gtc.2016.09.013. Review.


Proteomic analysis reveals contrasting stress response to uranium in two nitrogen-fixing Anabaena strains, differentially tolerant to uranium.

Panda B, Basu B, Acharya C, Rajaram H, Apte SK.

Aquat Toxicol. 2017 Jan;182:205-213. doi: 10.1016/j.aquatox.2016.12.002. Epub 2016 Dec 5.


Chronic opioid use is associated with altered gut microbiota and predicts readmissions in patients with cirrhosis.

Acharya C, Betrapally NS, Gillevet PM, Sterling RK, Akbarali H, White MB, Ganapathy D, Fagan A, Sikaroodi M, Bajaj JS.

Aliment Pharmacol Ther. 2017 Jan;45(2):319-331. doi: 10.1111/apt.13858. Epub 2016 Nov 20.


Elevated neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio and decreased platelet-to-lymphocyte ratio are associated with poor prognosis in multiple myeloma.

Shi L, Qin X, Wang H, Xia Y, Li Y, Chen X, Shang L, Tai YT, Feng X, Acharya P, Acharya C, Xu Y, Deng S, Hao M, Zou D, Zhao Y, Ru K, Qiu L, An G.

Oncotarget. 2017 Mar 21;8(12):18792-18801. doi: 10.18632/oncotarget.13320.


Cesium and strontium tolerant Arthrobacter sp. strain KMSZP6 isolated from a pristine uranium ore deposit.

Swer PB, Joshi SR, Acharya C.

AMB Express. 2016 Dec;6(1):69. doi: 10.1186/s13568-016-0247-3. Epub 2016 Sep 13.


A Novel Spirooxindole Derivative Inhibits the Growth of Leishmania donovani Parasites both In Vitro and In Vivo by Targeting Type IB Topoisomerase.

Saha S, Acharya C, Pal U, Chowdhury SR, Sarkar K, Maiti NC, Jaisankar P, Majumder HK.

Antimicrob Agents Chemother. 2016 Sep 23;60(10):6281-93. doi: 10.1128/AAC.00352-16. Print 2016 Oct.


Prevalence and Predictors of Alcohol Consumption among the Squatter of Kathmandu Valley.

Thapa P, Mishra SR, Pandey AR, Belbase P, Acharya C, Bista B, Ghimire N, Aryal KK.

J Nepal Health Res Counc. 2016 Jan;14(32):18-26.


Osteoclasts promote immune suppressive microenvironment in multiple myeloma: therapeutic implication.

An G, Acharya C, Feng X, Wen K, Zhong M, Zhang L, Munshi NC, Qiu L, Tai YT, Anderson KC.

Blood. 2016 Sep 22;128(12):1590-603. doi: 10.1182/blood-2016-03-707547. Epub 2016 Jul 14.


Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.

Acharya CR, McCarthy JM, Owzar K, Allen AS.

BMC Bioinformatics. 2016 Jun 24;17:257. doi: 10.1186/s12859-016-1123-5.


Dual NAMPT and BTK Targeting Leads to Synergistic Killing of Waldenström Macroglobulinemia Cells Regardless of MYD88 and CXCR4 Somatic Mutation Status.

Cea M, Cagnetta A, Acharya C, Acharya P, Tai YT, Yang C, Lovera D, Soncini D, Miglino M, Fraternali-Orcioni G, Mastracci L, Nencioni A, Montecucco F, Monacelli F, Ballestrero A, Hideshima T, Chauhan D, Gobbi M, Lemoli RM, Munshi N, Treon SP, Anderson KC.

Clin Cancer Res. 2016 Dec 15;22(24):6099-6109. Epub 2016 Jun 10.


How compliant are in vitro fertilization member clinics in following embryo transfer guidelines? An analysis of 59,689 fresh first in vitro fertilization autologous cycles from 2011 to 2012.

Keyhan S, Acharya KS, Acharya CR, Yeh JS, Provost MP, Goldfarb JM, Muasher SJ.

Fertil Steril. 2016 Sep 1;106(3):645-652.e1. doi: 10.1016/j.fertnstert.2016.05.012. Epub 2016 Jun 4.


Do donor oocyte cycles comply with ASRM/SART embryo transfer guidelines? An analysis of 13,393 donor cycles from the SART registry.

Acharya KS, Keyhan S, Acharya CR, Yeh JS, Provost MP, Goldfarb JM, Muasher SJ.

Fertil Steril. 2016 Sep 1;106(3):603-7. doi: 10.1016/j.fertnstert.2016.04.039. Epub 2016 May 13.


APRIL and BCMA promote human multiple myeloma growth and immunosuppression in the bone marrow microenvironment.

Tai YT, Acharya C, An G, Moschetta M, Zhong MY, Feng X, Cea M, Cagnetta A, Wen K, van Eenennaam H, van Elsas A, Qiu L, Richardson P, Munshi N, Anderson KC.

Blood. 2016 Jun 23;127(25):3225-36. doi: 10.1182/blood-2016-01-691162. Epub 2016 Apr 28.


A diagnostic tool for population models using non-compartmental analysis: The ncappc package for R.

Acharya C, Hooker AC, Türkyılmaz GY, Jönsson S, Karlsson MO.

Comput Methods Programs Biomed. 2016 Apr;127:83-93. doi: 10.1016/j.cmpb.2016.01.013. Epub 2016 Feb 17.


Perception, knowledge, and attitude toward mental disorders and psychiatry among medical undergraduates in Karnataka: A cross-sectional study.

Aruna G, Mittal S, Yadiyal MB, Acharya C, Acharya S, Uppulari C.

Indian J Psychiatry. 2016 Jan-Mar;58(1):70-6. doi: 10.4103/0019-5545.174381.


Detection of HIV-1 p24 antigen in patients with varying degrees of viremia using an ELISA with a photochemical signal amplification system.

Bystryak S, Acharya C.

Clin Chim Acta. 2016 May 1;456:128-136. doi: 10.1016/j.cca.2016.02.022. Epub 2016 Mar 3.


Unexpected Interactions of the Cyanobacterial Metallothionein SmtA with Uranium.

Acharya C, Blindauer CA.

Inorg Chem. 2016 Feb 15;55(4):1505-15. doi: 10.1021/acs.inorgchem.5b02327. Epub 2016 Jan 25.


miR-23b/SP1/c-myc forms a feed-forward loop supporting multiple myeloma cell growth.

Fulciniti M, Amodio N, Bandi RL, Cagnetta A, Samur MK, Acharya C, Prabhala R, D'Aquila P, Bellizzi D, Passarino G, Adamia S, Neri A, Hunter ZR, Treon SP, Anderson KC, Tassone P, Munshi NC.

Blood Cancer J. 2016 Jan 15;6:e380. doi: 10.1038/bcj.2015.106.


An electrostatic mechanism for Ca(2+)-mediated regulation of gap junction channels.

Bennett BC, Purdy MD, Baker KA, Acharya C, McIntire WE, Stevens RC, Zhang Q, Harris AL, Abagyan R, Yeager M.

Nat Commun. 2016 Jan 12;7:8770. doi: 10.1038/ncomms9770.


Evidence for a role of the histone deacetylase SIRT6 in DNA damage response of multiple myeloma cells.

Cea M, Cagnetta A, Adamia S, Acharya C, Tai YT, Fulciniti M, Ohguchi H, Munshi A, Acharya P, Bhasin MK, Zhong L, Carrasco R, Monacelli F, Ballestrero A, Richardson P, Gobbi M, Lemoli RM, Munshi N, Hideshima T, Nencioni A, Chauhan D, Anderson KC.

Blood. 2016 Mar 3;127(9):1138-50. doi: 10.1182/blood-2015-06-649970. Epub 2015 Dec 16.


Pregnancy outcomes decline with increasing body mass index: analysis of 239,127 fresh autologous in vitro fertilization cycles from the 2008-2010 Society for Assisted Reproductive Technology registry.

Provost MP, Acharya KS, Acharya CR, Yeh JS, Steward RG, Eaton JL, Goldfarb JM, Muasher SJ.

Fertil Steril. 2016 Mar;105(3):663-669. doi: 10.1016/j.fertnstert.2015.11.008. Epub 2015 Nov 25.


Genome-environment associations in sorghum landraces predict adaptive traits.

Lasky JR, Upadhyaya HD, Ramu P, Deshpande S, Hash CT, Bonnette J, Juenger TE, Hyma K, Acharya C, Mitchell SE, Buckler ES, Brenton Z, Kresovich S, Morris GP.

Sci Adv. 2015 Jul 3;1(6):e1400218. doi: 10.1126/sciadv.1400218. eCollection 2015 Jul.

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