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Items: 25

1.

High-throughput identification of peptide agonists against GPCRs by co-culture of mammalian reporter cells and peptide-secreting yeast cells using droplet microfluidics.

Yaginuma K, Aoki W, Miura N, Ohtani Y, Aburaya S, Kogawa M, Nishikawa Y, Hosokawa M, Takeyama H, Ueda M.

Sci Rep. 2019 Jul 29;9(1):10920. doi: 10.1038/s41598-019-47388-x.

2.

Domain swapping of complementarity-determining region in nanobodies produced by Pichia pastoris.

Miura N, Miyamoto K, Ohtani Y, Yaginuma K, Aburaya S, Kitagawa Y, Aoki W, Ueda M.

AMB Express. 2019 Jul 15;9(1):107. doi: 10.1186/s13568-019-0833-2.

3.

Temporal proteome dynamics of Clostridium cellulovorans cultured with major plant cell wall polysaccharides.

Aburaya S, Aoki W, Kuroda K, Minakuchi H, Ueda M.

BMC Microbiol. 2019 Jun 3;19(1):118. doi: 10.1186/s12866-019-1480-0.

4.

Peptide barcoding for establishment of new types of genotype-phenotype linkages.

Miyamoto K, Aoki W, Ohtani Y, Miura N, Aburaya S, Matsuzaki Y, Kajiwara K, Kitagawa Y, Ueda M.

PLoS One. 2019 Apr 23;14(4):e0215993. doi: 10.1371/journal.pone.0215993. eCollection 2019.

5.

Evaluation of meter-long monolithic columns for selected reaction monitoring mass spectrometry.

Ohtani Y, Aburaya S, Minakuchi H, Miura N, Aoki W, Ueda M.

J Biosci Bioeng. 2019 Sep;128(3):379-383. doi: 10.1016/j.jbiosc.2019.03.001. Epub 2019 Apr 5.

PMID:
30956101
6.

Pentenediol-Type Compounds Specifically Bind to Voltage-Dependent Anion Channel 1 in Saccharomyces cerevisiae Mitochondria.

Unten Y, Murai M, Yamamoto T, Watanabe A, Ichimaru N, Aburaya S, Aoki W, Shinohara Y, Miyoshi H.

Biochemistry. 2019 Feb 26;58(8):1141-1154. doi: 10.1021/acs.biochem.8b01209. Epub 2019 Feb 4.

PMID:
30657320
7.

Ruegeria sp. Strains Isolated from the Reef-Building Coral Galaxea fascicularis Inhibit Growth of the Temperature-Dependent Pathogen Vibrio coralliilyticus.

Miura N, Motone K, Takagi T, Aburaya S, Watanabe S, Aoki W, Ueda M.

Mar Biotechnol (NY). 2019 Feb;21(1):1-8. doi: 10.1007/s10126-018-9853-1. Epub 2018 Sep 8.

PMID:
30194504
8.

Alectinib Resistance in ALK-Rearranged Lung Cancer by Dual Salvage Signaling in a Clinically Paired Resistance Model.

Tsuji T, Ozasa H, Aoki W, Aburaya S, Funazo T, Furugaki K, Yoshimura Y, Ajimizu H, Okutani R, Yasuda Y, Nomizo T, Uemasu K, Hasegawa K, Yoshida H, Yagi Y, Nagai H, Sakamori Y, Ueda M, Hirai T, Kim YH.

Mol Cancer Res. 2019 Jan;17(1):212-224. doi: 10.1158/1541-7786.MCR-18-0325. Epub 2018 Aug 31.

PMID:
30171175
9.

Comparative Proteomic Analysis of Lithospermum erythrorhizon Reveals Regulation of a Variety of Metabolic Enzymes Leading to Comprehensive Understanding of the Shikonin Biosynthetic Pathway.

Takanashi K, Nakagawa Y, Aburaya S, Kaminade K, Aoki W, Saida-Munakata Y, Sugiyama A, Ueda M, Yazaki K.

Plant Cell Physiol. 2019 Jan 1;60(1):19-28. doi: 10.1093/pcp/pcy183.

PMID:
30169873
10.

Apoptosis-derived membrane vesicles drive the cGAS-STING pathway and enhance type I IFN production in systemic lupus erythematosus.

Kato Y, Park J, Takamatsu H, Konaka H, Aoki W, Aburaya S, Ueda M, Nishide M, Koyama S, Hayama Y, Kinehara Y, Hirano T, Shima Y, Narazaki M, Kumanogoh A.

Ann Rheum Dis. 2018 Oct;77(10):1507-1515. doi: 10.1136/annrheumdis-2018-212988. Epub 2018 Jun 26.

11.

Protection of Coral Larvae from Thermally Induced Oxidative Stress by Redox Nanoparticles.

Motone K, Takagi T, Aburaya S, Aoki W, Miura N, Minakuchi H, Takeyama H, Nagasaki Y, Shinzato C, Ueda M.

Mar Biotechnol (NY). 2018 Aug;20(4):542-548. doi: 10.1007/s10126-018-9825-5. Epub 2018 Apr 28.

PMID:
29705864
12.

Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica).

Kitajima S, Aoki W, Shibata D, Nakajima D, Sakurai N, Yazaki K, Munakata R, Taira T, Kobayashi M, Aburaya S, Savadogo EH, Hibino S, Yano H.

Planta. 2018 Jun;247(6):1423-1438. doi: 10.1007/s00425-018-2880-3. Epub 2018 Mar 13.

PMID:
29536219
13.

Epoxycyclohexenedione-Type Compounds Make Up a New Class of Inhibitors of the Bovine Mitochondrial ADP/ATP Carrier.

Aoyama A, Murai M, Ichimaru N, Aburaya S, Aoki W, Miyoshi H.

Biochemistry. 2018 Feb 13;57(6):1031-1044. doi: 10.1021/acs.biochem.7b01119. Epub 2018 Jan 24.

PMID:
29313673
14.

Metabolite profiling of the fermentation process of "yamahai-ginjo-shikomi" Japanese sake.

Tatsukami Y, Morisaka H, Aburaya S, Aoki W, Kohsaka C, Tani M, Hirooka K, Yamamoto Y, Kitaoka A, Fujiwara H, Wakai Y, Ueda M.

PLoS One. 2018 Jan 3;13(1):e0190040. doi: 10.1371/journal.pone.0190040. eCollection 2018.

15.

Definitive screening design enables optimization of LC-ESI-MS/MS parameters in proteomics.

Aburaya S, Aoki W, Minakuchi H, Ueda M.

Biosci Biotechnol Biochem. 2017 Dec;81(12):2237-2243. doi: 10.1080/09168451.2017.1391685. Epub 2017 Oct 25.

PMID:
29068257
16.

Pinpoint Chemical Modification of the Quinone-Access Channel of Mitochondrial Complex I via a Two-Step Conjugation Reaction.

Masuya T, Murai M, Ito T, Aburaya S, Aoki W, Miyoshi H.

Biochemistry. 2017 Aug 15;56(32):4279-4287. doi: 10.1021/acs.biochem.7b00612. Epub 2017 Jul 31.

PMID:
28707880
17.

Molecular changes in appearance of a cancer cell among normal HEK293T cells.

Chung J, Aburaya S, Aoki W, Ueda M.

J Biosci Bioeng. 2017 Mar;123(3):281-286. doi: 10.1016/j.jbiosc.2016.09.012. Epub 2016 Oct 21.

PMID:
27777049
18.

Transcriptome and proteome analyses provide insight into laticifer's defense of Euphorbia tirucalli against pests.

Kitajima S, Miura K, Aoki W, Yamato KT, Taira T, Murakami R, Aburaya S.

Plant Physiol Biochem. 2016 Nov;108:434-446. doi: 10.1016/j.plaphy.2016.08.008. Epub 2016 Aug 18.

PMID:
27566924
19.

Characteristic strategy of assimilation of various saccharides by Clostridium cellulovorans.

Inamori T, Aburaya S, Morisaka H, Kuroda K, Ueda M.

AMB Express. 2016 Dec;6(1):64. doi: 10.1186/s13568-016-0237-5. Epub 2016 Sep 1.

20.

A comparative proteomics study of a synovial cell line stimulated with TNF-α.

Shibasaki S, Karasaki M, Aburaya S, Morisaka H, Takeda Y, Aoki W, Kitano S, Kitano M, Ueda M, Sano H, Iwasaki T.

FEBS Open Bio. 2016 Mar 31;6(5):418-24. doi: 10.1002/2211-5463.12049. eCollection 2016 May.

21.

Specific Methylation of Asp160 (49 kDa subunit) Located inside the Quinone Binding Cavity of Bovine Mitochondrial Complex I.

Murai M, Inaoka H, Masuya T, Aburaya S, Aoki W, Miyoshi H.

Biochemistry. 2016 Jun 14;55(23):3189-97. doi: 10.1021/acs.biochem.6b00190. Epub 2016 Jun 2.

PMID:
27211056
22.

Reduction of Synthetic Ubiquinone QT Catalyzed by Bovine Mitochondrial Complex I Is Decoupled from Proton Translocation.

Okuda K, Murai M, Aburaya S, Aoki W, Miyoshi H.

Biochemistry. 2016 Jan 26;55(3):470-81. doi: 10.1021/acs.biochem.5b01090. Epub 2016 Jan 7.

PMID:
26701224
23.

Putative Alginate Assimilation Process of the Marine Bacterium Saccharophagus degradans 2-40 Based on Quantitative Proteomic Analysis.

Takagi T, Morisaka H, Aburaya S, Tatsukami Y, Kuroda K, Ueda M.

Mar Biotechnol (NY). 2016 Feb;18(1):15-23. doi: 10.1007/s10126-015-9667-3. Epub 2015 Oct 12.

PMID:
26458373
24.

Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis.

Aburaya S, Esaka K, Morisaka H, Kuroda K, Ueda M.

AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015.

25.

Exoproteome analysis of Clostridium cellulovorans in natural soft-biomass degradation.

Esaka K, Aburaya S, Morisaka H, Kuroda K, Ueda M.

AMB Express. 2015 Jan 24;5(1):2. eCollection 2015 Dec.

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