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Items: 40


Hemorrhagic crusted papule on the arm.

Abubucker S, Cuda J, Cohen BA.

Cutis. 2018 Nov;102(5):309;316;321. No abstract available.


Depigmented plaques on vulva.

Abubucker S, Cohen B.

J Fam Pract. 2018 Mar;67(3):171-174.


Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling.

d'Hennezel E, Abubucker S, Murphy LO, Cullen TW.

mSystems. 2017 Nov 14;2(6). pii: e00046-17. doi: 10.1128/mSystems.00046-17. eCollection 2017 Nov-Dec.


Visual Diagnosis: The Case of the Balding Preschooler.

Abubucker S, Cohen BA.

Pediatr Rev. 2017 Nov;38(11):e41-e44. doi: 10.1542/pir.2016-0143. Review. No abstract available.


Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.

Wlodarska M, Luo C, Kolde R, d'Hennezel E, Annand JW, Heim CE, Krastel P, Schmitt EK, Omar AS, Creasey EA, Garner AL, Mohammadi S, O'Connell DJ, Abubucker S, Arthur TD, Franzosa EA, Huttenhower C, Murphy LO, Haiser HJ, Vlamakis H, Porter JA, Xavier RJ.

Cell Host Microbe. 2017 Jul 12;22(1):25-37.e6. doi: 10.1016/j.chom.2017.06.007.


mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis.

Davis C, Kota K, Baldhandapani V, Gong W, Abubucker S, Becker E, Martin J, Wylie KM, Khetani R, Hudson ME, Weinstock GM, Mitreva M.

J Data Mining Genomics Proteomics. 2015 Aug;4(3). pii: 135. Epub 2013 Jul 31.


Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.

Nobel YR, Cox LM, Kirigin FF, Bokulich NA, Yamanishi S, Teitler I, Chung J, Sohn J, Barber CM, Goldfarb DS, Raju K, Abubucker S, Zhou Y, Ruiz VE, Li H, Mitreva M, Alekseyenko AV, Weinstock GM, Sodergren E, Blaser MJ.

Nat Commun. 2015 Jun 30;6:7486. doi: 10.1038/ncomms8486.


Mining novel effector proteins from the esophageal gland cells of Meloidogyne incognita.

Rutter WB, Hewezi T, Abubucker S, Maier TR, Huang G, Mitreva M, Hussey RS, Baum TJ.

Mol Plant Microbe Interact. 2014 Sep;27(9):965-74. doi: 10.1094/MPMI-03-14-0076-R.


The prevalence of species and strains in the human microbiome: a resource for experimental efforts.

Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M.

PLoS One. 2014 May 14;9(5):e97279. doi: 10.1371/journal.pone.0097279. eCollection 2014.


Identification and characterization of alternative splicing in parasitic nematode transcriptomes.

Abubucker S, McNulty SN, Rosa BA, Mitreva M.

Parasit Vectors. 2014 Apr 1;7:151. doi: 10.1186/1756-3305-7-151.


Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.

Carl MA, Ndao IM, Springman AC, Manning SD, Johnson JR, Johnston BD, Burnham CA, Weinstock ES, Weinstock GM, Wylie TN, Mitreva M, Abubucker S, Zhou Y, Stevens HJ, Hall-Moore C, Julian S, Shaikh N, Warner BB, Tarr PI.

Clin Infect Dis. 2014 May;58(9):1211-8. doi: 10.1093/cid/ciu084. Epub 2014 Mar 18.


Genome of the human hookworm Necator americanus.

Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, Tyagi R, Heizer E, Zhang X, Bhonagiri-Palsikar V, Minx P, Warren WC, Wang Q, Zhan B, Hotez PJ, Sternberg PW, Dougall A, Gaze ST, Mulvenna J, Sotillo J, Ranganathan S, Rabelo EM, Wilson RW, Felgner PL, Bethony J, Hawdon JM, Gasser RB, Loukas A, Mitreva M.

Nat Genet. 2014 Mar;46(3):261-269. doi: 10.1038/ng.2875. Epub 2014 Jan 19.


Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis.

Turabelidze G, Lawrence SJ, Gao H, Sodergren E, Weinstock GM, Abubucker S, Wylie T, Mitreva M, Shaikh N, Gautom R, Tarr PI.

J Clin Microbiol. 2013 Dec;51(12):3950-4. doi: 10.1128/JCM.01930-13. Epub 2013 Sep 18.


Discovery of anthelmintic drug targets and drugs using chokepoints in nematode metabolic pathways.

Taylor CM, Wang Q, Rosa BA, Huang SC, Powell K, Schedl T, Pearce EJ, Abubucker S, Mitreva M.

PLoS Pathog. 2013;9(8):e1003505. doi: 10.1371/journal.ppat.1003505. Epub 2013 Aug 1.


Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues.

Wang Z, Gao X, Martin J, Yin Y, Abubucker S, Rash AC, Li BW, Nash B, Hallsworth-Pepin K, Jasmer DP, Mitreva M.

Mol Genet Genomics. 2013 Jun;288(5-6):243-60. doi: 10.1007/s00438-013-0743-y. Epub 2013 Apr 10.


Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases.

Taylor CM, Martin J, Rao RU, Powell K, Abubucker S, Mitreva M.

PLoS Pathog. 2013 Feb;9(2):e1003149. doi: 10.1371/journal.ppat.1003149. Epub 2013 Feb 14.


Widespread colonization of the lung by Tropheryma whipplei in HIV infection.

Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, Mitreva M, Abubucker S, Martin J, Yao G, Campbell TB, Flores SC, Ackerman G, Stombaugh J, Ursell L, Beck JM, Curtis JL, Young VB, Lynch SV, Huang L, Weinstock GM, Knox KS, Twigg H, Morris A, Ghedin E, Bushman FD, Collman RG, Knight R, Fontenot AP; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2013 May 15;187(10):1110-7. doi: 10.1164/rccm.201211-2145OC.


A nuclear single-nucleotide polymorphism (SNP) potentially useful for the separation of Rhodnius prolixus from members of the Rhodnius robustus cryptic species complex (Hemiptera: Reduviidae).

Pavan MG, Mesquita RD, Lawrence GG, Lazoski C, Dotson EM, Abubucker S, Mitreva M, Randall-Maher J, Monteiro FA.

Infect Genet Evol. 2013 Mar;14:426-33. doi: 10.1016/j.meegid.2012.10.018. Epub 2012 Dec 6.


Transcriptomic and proteomic analyses of a Wolbachia-free filarial parasite provide evidence of trans-kingdom horizontal gene transfer.

McNulty SN, Abubucker S, Simon GM, Mitreva M, McNulty NP, Fischer K, Curtis KC, Brattig NW, Weil GJ, Fischer PU.

PLoS One. 2012;7(9):e45777. doi: 10.1371/journal.pone.0045777. Epub 2012 Sep 26.


Exploring metazoan evolution through dynamic and holistic changes in protein families and domains.

Wang Z, Zarlenga D, Martin J, Abubucker S, Mitreva M.

BMC Evol Biol. 2012 Aug 3;12:138. doi: 10.1186/1471-2148-12-138.


A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).

Goll J, Thiagarajan M, Abubucker S, Huttenhower C, Yooseph S, Methé BA.

PLoS One. 2012;7(6):e29044. doi: 10.1371/journal.pone.0029044. Epub 2012 Jun 13.


Metabolic reconstruction for metagenomic data and its application to the human microbiome.

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C.

PLoS Comput Biol. 2012;8(6):e1002358. doi: 10.1371/journal.pcbi.1002358. Epub 2012 Jun 13.


Effects of doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo.

Rao RU, Huang Y, Abubucker S, Heinz M, Crosby SD, Mitreva M, Weil GJ.

J Biomed Sci. 2012 Feb 9;19:21. doi: 10.1186/1423-0127-19-21.

24. update 2011: addition of data sets and tools featuring next-generation sequencing data.

Martin J, Abubucker S, Heizer E, Taylor CM, Mitreva M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D720-8. doi: 10.1093/nar/gkr1194. Epub 2011 Dec 1.


HelmCoP: an online resource for helminth functional genomics and drug and vaccine targets prioritization.

Abubucker S, Martin J, Taylor CM, Mitreva M.

PLoS One. 2011;6(7):e21832. doi: 10.1371/journal.pone.0021832. Epub 2011 Jul 8.


Targeting protein-protein interactions for parasite control.

Taylor CM, Fischer K, Abubucker S, Wang Z, Martin J, Jiang D, Magliano M, Rosso MN, Li BW, Fischer PU, Mitreva M.

PLoS One. 2011 Apr 27;6(4):e18381. doi: 10.1371/journal.pone.0018381.


The draft genome of the parasitic nematode Trichinella spiralis.

Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L, Minx P, Yang SP, Warren WC, Fulton RS, Bhonagiri V, Zhang X, Hallsworth-Pepin K, Clifton SW, McCarter JP, Appleton J, Mardis ER, Wilson RK.

Nat Genet. 2011 Mar;43(3):228-35. doi: 10.1038/ng.769. Epub 2011 Feb 20.


Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets.

Li BW, Rush AC, Jiang DJ, Mitreva M, Abubucker S, Weil GJ.

PLoS Negl Trop Dis. 2011 Jan 25;5(1):e947. doi: 10.1371/journal.pntd.0000947.


Novel venom gene discovery in the platypus.

Whittington CM, Papenfuss AT, Locke DP, Mardis ER, Wilson RK, Abubucker S, Mitreva M, Wong ES, Hsu AL, Kuchel PW, Belov K, Warren WC.

Genome Biol. 2010;11(9):R95. doi: 10.1186/gb-2010-11-9-r95. Epub 2010 Sep 29.


Identification of hookworm DAF-16/FOXO response elements and direct gene targets.

Gao X, Wang Z, Martin J, Abubucker S, Zhang X, Mitreva M, Hawdon JM.

PLoS One. 2010 Aug 19;5(8):e12289. doi: 10.1371/journal.pone.0012289.


A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing.

Cantacessi C, Jex AR, Hall RS, Young ND, Campbell BE, Joachim A, Nolan MJ, Abubucker S, Sternberg PW, Ranganathan S, Mitreva M, Gasser RB.

Nucleic Acids Res. 2010 Sep;38(17):e171. doi: 10.1093/nar/gkq667. Epub 2010 Aug 3.


Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation.

Wang Z, Abubucker S, Martin J, Wilson RK, Hawdon J, Mitreva M.

BMC Genomics. 2010 May 14;11:307. doi: 10.1186/1471-2164-11-307.


Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph.

Hao YJ, Montiel R, Abubucker S, Mitreva M, Simões N.

Mol Biochem Parasitol. 2010 Feb;169(2):79-86. doi: 10.1016/j.molbiopara.2009.10.002. Epub 2009 Oct 27.


The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi.

Abubucker S, Zarlenga DS, Martin J, Yin Y, Wang Z, McCarter JP, Gasbarree L, Wilson RK, Mitreva M.

Vet Parasitol. 2009 May 26;162(1-2):89-99. doi: 10.1016/j.vetpar.2009.02.023. Epub 2009 Feb 27.


Molecular determinants archetypical to the phylum Nematoda.

Yin Y, Martin J, Abubucker S, Wang Z, Wyrwicz L, Rychlewski L, McCarter JP, Wilson RK, Mitreva M.

BMC Genomics. 2009 Mar 18;10:114. doi: 10.1186/1471-2164-10-114.


Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance.

Wang Z, Martin J, Abubucker S, Yin Y, Gasser RB, Mitreva M.

BMC Evol Biol. 2009 Jan 28;9:23. doi: 10.1186/1471-2148-9-23.


NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M.

BMC Genomics. 2008 Nov 4;9:525. doi: 10.1186/1471-2164-9-525.

38. update 2008: improvements enabling more efficient data mining and comparative nematode genomics.

Martin J, Abubucker S, Wylie T, Yin Y, Wang Z, Mitreva M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D571-8. doi: 10.1093/nar/gkn744. Epub 2008 Oct 21.


Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans.

Yin Y, Martin J, Abubucker S, Scott AL, McCarter JP, Wilson RK, Jasmer DP, Mitreva M.

PLoS Negl Trop Dis. 2008 Aug 6;2(8):e269. doi: 10.1371/journal.pntd.0000269.


The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences.

Abubucker S, Martin J, Yin Y, Fulton L, Yang SP, Hallsworth-Pepin K, Johnston JS, Hawdon J, McCarter JP, Wilson RK, Mitreva M.

Mol Biochem Parasitol. 2008 Feb;157(2):187-92. Epub 2007 Nov 9.

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