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Items: 1 to 50 of 115

1.

The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo.

Blum TB, Filippidou S, Fatton M, Junier P, Abrahams JP.

Sci Rep. 2019 Oct 18;9(1):14948. doi: 10.1038/s41598-019-51440-1.

2.

3D Electron Diffraction: The Nanocrystallography Revolution.

Gemmi M, Mugnaioli E, Gorelik TE, Kolb U, Palatinus L, Boullay P, Hovmöller S, Abrahams JP.

ACS Cent Sci. 2019 Aug 28;5(8):1315-1329. doi: 10.1021/acscentsci.9b00394. Epub 2019 Jul 19. Review.

3.

2D Crystal Engineering of Nanosheets Assembled from Helical Peptide Building Blocks.

Merg AD, Touponse G, van Genderen E, Zuo X, Bazrafshan A, Blum T, Hughes S, Salaita K, Abrahams JP, Conticello VP.

Angew Chem Int Ed Engl. 2019 Sep 16;58(38):13507-13512. doi: 10.1002/anie.201906214. Epub 2019 Aug 12. Review.

PMID:
31291499
4.

Supramolecular architectures of molecularly thin yet robust free-standing layers.

Moradi M, Opara NL, Tulli LG, Wäckerlin C, Dalgarno SJ, Teat SJ, Baljozovic M, Popova O, van Genderen E, Kleibert A, Stahlberg H, Abrahams JP, Padeste C, Corvini PF, Jung TA, Shahgaldian P.

Sci Adv. 2019 Feb 22;5(2):eaav4489. doi: 10.1126/sciadv.aav4489. eCollection 2019 Feb.

5.

Reducing dynamical electron scattering reveals hydrogen atoms.

Clabbers MTB, Gruene T, van Genderen E, Abrahams JP.

Acta Crystallogr A Found Adv. 2019 Jan 1;75(Pt 1):82-93. doi: 10.1107/S2053273318013918. Epub 2019 Jan 1.

6.

Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector. Corrigendum.

van Genderen E, Clabbers MTB, Das PP, Stewart A, Nederlof I, Barentsen KC, Portillo Q, Pannu NS, Nicolopoulos S, Gruene T, Abrahams JP.

Acta Crystallogr A Found Adv. 2018 Nov 1;74(Pt 6):709. doi: 10.1107/S2053273318014079. Epub 2018 Oct 30.

7.

A Molecular Level Approach To Elucidate the Supramolecular Packing of Light-Harvesting Antenna Systems.

Thomas B, Dubey RK, Clabbers MTB, Gupta KBSS, van Genderen E, Jager WF, Abrahams JP, Sudholter EJR, de Groot HJM.

Chemistry. 2018 Oct 9;24(56):14989-14993. doi: 10.1002/chem.201802288. Epub 2018 Sep 13.

PMID:
30088299
8.

Electron diffraction data processing with DIALS.

Clabbers MTB, Gruene T, Parkhurst JM, Abrahams JP, Waterman DG.

Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):506-518. doi: 10.1107/S2059798318007726. Epub 2018 May 30.

9.

Electron crystallography with the EIGER detector.

Tinti G, Fröjdh E, van Genderen E, Gruene T, Schmitt B, de Winter DAM, Weckhuysen BM, Abrahams JP.

IUCrJ. 2018 Feb 14;5(Pt 2):190-199. doi: 10.1107/S2052252518000945. eCollection 2018 Mar 1.

10.

The Neuronal Tau Protein Blocks in Vitro Fibrillation of the Amyloid-β (Aβ) Peptide at the Oligomeric Stage.

Wallin C, Hiruma Y, Wärmländer SKTS, Huvent I, Jarvet J, Abrahams JP, Gräslund A, Lippens G, Luo J.

J Am Chem Soc. 2018 Jul 5;140(26):8138-8146. doi: 10.1021/jacs.7b13623. Epub 2018 May 22.

PMID:
29708745
11.

Protein structure determination by electron diffraction using a single three-dimensional nanocrystal.

Clabbers MTB, van Genderen E, Wan W, Wiegers EL, Gruene T, Abrahams JP.

Acta Crystallogr D Struct Biol. 2017 Sep 1;73(Pt 9):738-748. doi: 10.1107/S2059798317010348. Epub 2017 Aug 15.

12.

Cross-interactions between the Alzheimer disease amyloid-β peptide and other amyloid proteins. A FURTHER ASPECT OF THE AMYLOID CASCADE HYPOTHESIS.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

J Biol Chem. 2017 Feb 3;292(5):2046. doi: 10.1074/jbc.A116.714576. Epub 2017 Feb 3. No abstract available.

13.

Purification of Biotinylated Proteins Using Single Walled Carbon Nanotube-Streptavidin Complexes.

Wang R, Boleij M, Yin Q, Galjart N, Lin B, Yuan N, Zhou X, Tan M, Ding J, Liu Z, Abrahams JP.

J Nanosci Nanotechnol. 2017 Feb;17(2):926-31.

PMID:
29671478
14.

A Novel Capturing Method for Quantification of Extra-Cellular Nanovesicles.

Yin Q, Liu Z, Laroche F, Zhou X, Shao N, Lin B, Wang R, Yuan N, Ding J, Abrahams JP.

J Nanosci Nanotechnol. 2017 Feb;17(2):908-13.

PMID:
29671474
15.

Specific Binding of Cu(II) Ions to Amyloid-Beta Peptides Bound to Aggregation-Inhibiting Molecules or SDS Micelles Creates Complexes that Generate Radical Oxygen Species.

Tiiman A, Luo J, Wallin C, Olsson L, Lindgren J, Jarvet J, Per R, Sholts SB, Rahimipour S, Abrahams JP, Karlström AE, Gräslund A, Wärmländer SK.

J Alzheimers Dis. 2016 Oct 4;54(3):971-982.

PMID:
27567855
16.

Cross-interactions between the Alzheimer Disease Amyloid-β Peptide and Other Amyloid Proteins: A Further Aspect of the Amyloid Cascade Hypothesis.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

J Biol Chem. 2016 Aug 5;291(32):16485-93. doi: 10.1074/jbc.R116.714576. Epub 2016 Jun 20. Review. Erratum in: J Biol Chem. 2017 Feb 3;292(5):2046.

17.

Characterization of Mn(II) ion binding to the amyloid-β peptide in Alzheimer's disease.

Wallin C, Kulkarni YS, Abelein A, Jarvet J, Liao Q, Strodel B, Olsson L, Luo J, Abrahams JP, Sholts SB, Roos PM, Kamerlin SC, Gräslund A, Wärmländer SK.

J Trace Elem Med Biol. 2016 Dec;38:183-193. doi: 10.1016/j.jtemb.2016.03.009. Epub 2016 Mar 18.

PMID:
27085215
18.

Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector.

van Genderen E, Clabbers MT, Das PP, Stewart A, Nederlof I, Barentsen KC, Portillo Q, Pannu NS, Nicolopoulos S, Gruene T, Abrahams JP.

Acta Crystallogr A Found Adv. 2016 Mar;72(Pt 2):236-42. doi: 10.1107/S2053273315022500. Epub 2016 Feb 5. Erratum in: Acta Crystallogr A Found Adv. 2018 Nov 1;74(Pt 6):709.

19.

Lattice filter for processing image data of three-dimensional protein nanocrystals.

van Genderen E, Li YW, Nederlof I, Abrahams JP.

Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):34-9. doi: 10.1107/S205979831502149X. Epub 2016 Jan 1.

20.

Reciprocal Molecular Interactions between the Aβ Peptide Linked to Alzheimer's Disease and Insulin Linked to Diabetes Mellitus Type II.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

ACS Chem Neurosci. 2016 Mar 16;7(3):269-74. doi: 10.1021/acschemneuro.5b00325. Epub 2016 Jan 27.

PMID:
26785771
21.

A posteriori correction of camera characteristics from large image data sets.

Afanasyev P, Ravelli RB, Matadeen R, De Carlo S, van Duinen G, Alewijnse B, Peters PJ, Abrahams JP, Portugal RV, Schatz M, van Heel M.

Sci Rep. 2015 Jun 11;5:10317. doi: 10.1038/srep10317.

22.

Alzheimer peptides aggregate into transient nanoglobules that nucleate fibrils.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

Biochemistry. 2014 Oct 14;53(40):6302-8. doi: 10.1021/bi5003579. Epub 2014 Sep 29.

PMID:
25198136
23.

Non-chaperone proteins can inhibit aggregation and cytotoxicity of Alzheimer amyloid β peptide.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

J Biol Chem. 2014 Oct 3;289(40):27766-75. doi: 10.1074/jbc.M114.574947. Epub 2014 Aug 6.

24.

Endogenous polyamines reduce the toxicity of soluble aβ peptide aggregates associated with Alzheimer's disease.

Luo J, Mohammed I, Wärmländer SK, Hiruma Y, Gräslund A, Abrahams JP.

Biomacromolecules. 2014 Jun 9;15(6):1985-91. doi: 10.1021/bm401874j. Epub 2014 May 2.

PMID:
24750033
25.

The hairpin conformation of the amyloid β peptide is an important structural motif along the aggregation pathway.

Abelein A, Abrahams JP, Danielsson J, Gräslund A, Jarvet J, Luo J, Tiiman A, Wärmländer SK.

J Biol Inorg Chem. 2014 Jun;19(4-5):623-34. doi: 10.1007/s00775-014-1131-8. Epub 2014 Apr 16. Review.

PMID:
24737040
26.

Cyclic peptides as inhibitors of amyloid fibrillation.

Luo J, Abrahams JP.

Chemistry. 2014 Feb 24;20(9):2410-9. doi: 10.1002/chem.201304253. Epub 2014 Jan 29.

PMID:
24478167
27.

Inhibiting and reversing amyloid-β peptide (1-40) fibril formation with gramicidin S and engineered analogues.

Luo J, Otero JM, Yu CH, Wärmländer SK, Gräslund A, Overhand M, Abrahams JP.

Chemistry. 2013 Dec 16;19(51):17338-48. doi: 10.1002/chem.201301535. Epub 2013 Nov 11.

PMID:
24218178
28.

A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals.

Nederlof I, van Genderen E, Li YW, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1223-30. doi: 10.1107/S0907444913009700. Epub 2013 Jun 15.

29.

Human lysozyme inhibits the in vitro aggregation of Aβ peptides, which in vivo are associated with Alzheimer's disease.

Luo J, Wärmländer SK, Gräslund A, Abrahams JP.

Chem Commun (Camb). 2013 Jul 25;49(58):6507-9. doi: 10.1039/c3cc42325e. Epub 2013 Jun 13.

PMID:
23764522
30.

Imaging protein three-dimensional nanocrystals with cryo-EM.

Nederlof I, Li YW, van Heel M, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):852-9. doi: 10.1107/S0907444913002734. Epub 2013 Apr 19.

PMID:
23633595
31.

Cellular polyamines promote amyloid-beta (Aβ) peptide fibrillation and modulate the aggregation pathways.

Luo J, Yu CH, Yu H, Borstnar R, Kamerlin SC, Gräslund A, Abrahams JP, Wärmländer SK.

ACS Chem Neurosci. 2013 Mar 20;4(3):454-62. doi: 10.1021/cn300170x. Epub 2013 Jan 16.

32.

Structure of a post-translationally processed heterodimeric double-headed Kunitz-type serine protease inhibitor from potato.

Meulenbroek EM, Thomassen EA, Pouvreau L, Abrahams JP, Gruppen H, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):794-9. doi: 10.1107/S090744491201222X. Epub 2012 Jun 15.

PMID:
22751664
33.

Single-walled carbon nanotubes as scaffolds to concentrate DNA for the study of DNA-protein interactions.

Liu Z, Galli F, Waterreus WJ, Meulenbroek E, Koning RI, Lamers GE, Olsthoorn RC, Pannu N, Oosterkamp TH, Koster AJ, Dame RT, Abrahams JP.

Chemphyschem. 2012 Apr 23;13(6):1569-75. doi: 10.1002/cphc.201100896. Epub 2012 Mar 7.

PMID:
22407519
34.

Image processing and lattice determination for three-dimensional nanocrystals.

Jiang L, Georgieva D, Nederlof I, Liu Z, Abrahams JP.

Microsc Microanal. 2011 Dec;17(6):879-85. doi: 10.1017/S1431927611012244. Epub 2011 Nov 18.

PMID:
22094021
35.

Recent advances in the CRANK software suite for experimental phasing.

Pannu NS, Waterreus WJ, Skubák P, Sikharulidze I, Abrahams JP, de Graaff RA.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):331-7. doi: 10.1107/S0907444910052224. Epub 2011 Mar 18.

36.

"4D Biology for health and disease" workshop report.

Abrahams JP, Apweiler R, Balling R, Bertero MG, Bujnicki JM, Chayen NE, Chène P, Corthals GL, Dyląg T, Förster F, Heck AJ, Henderson PJ, Herwig R, Jehenson P, Kokalj SJ, Laue E, Legrain P, Martens L, Migliorini C, Musacchio A, Podobnik M, Schertler GF, Schreiber G, Sixma TK, Smit AB, Stuart D, Svergun DI, Taussig MJ.

N Biotechnol. 2011 Jul;28(4):291-3. doi: 10.1016/j.nbt.2010.10.003. Epub 2010 Oct 15.

PMID:
20951846
37.

A novel approximation method of CTF amplitude correction for 3D single particle reconstruction.

Jiang L, Liu Z, Georgieva D, Kuil ME, Abrahams JP.

Ultramicroscopy. 2010 Mar;110(4):350-8. doi: 10.1016/j.ultramic.2010.01.011. Epub 2010 Feb 1.

PMID:
20163916
38.

Medipix 2 detector applied to low energy electron microscopy.

van Gastel R, Sikharulidze I, Schramm S, Abrahams JP, Poelsema B, Tromp RM, van der Molen SJ.

Ultramicroscopy. 2009 Dec;110(1):33-5. doi: 10.1016/j.ultramic.2009.09.002. Epub 2009 Sep 17.

PMID:
19822398
39.

Unit-cell determination from randomly oriented electron-diffraction patterns.

Jiang L, Georgieva D, Zandbergen HW, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):625-32. doi: 10.1107/S0907444909003163. Epub 2009 Jun 20.

40.

The Max-Inf2/Lorentz Center workshop on New algorithms in macromolecular crystallography and electron microscopy.

Pannu NS, Ravelli RB, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):623-4. doi: 10.1107/S0907444909020861. Epub 2009 Jun 20.

41.

Mammalian Navigators are microtubule plus-end tracking proteins that can reorganize the cytoskeleton to induce neurite-like extensions.

van Haren J, Draegestein K, Keijzer N, Abrahams JP, Grosveld F, Peeters PJ, Moechars D, Galjart N.

Cell Motil Cytoskeleton. 2009 Oct;66(10):824-38. doi: 10.1002/cm.20370.

PMID:
19396870
42.

Crystal structure of chlorite dismutase, a detoxifying enzyme producing molecular oxygen.

de Geus DC, Thomassen EA, Hagedoorn PL, Pannu NS, van Duijn E, Abrahams JP.

J Mol Biol. 2009 Mar 20;387(1):192-206. doi: 10.1016/j.jmb.2009.01.036. Epub 2009 Jan 27.

PMID:
19361444
43.

Involvement of a carboxylated lysine in UV damage endonuclease.

Meulenbroek EM, Paspaleva K, Thomassen EA, Abrahams JP, Goosen N, Pannu NS.

Protein Sci. 2009 Mar;18(3):549-58. doi: 10.1002/pro.54.

44.

Characterization of a diagnostic Fab fragment binding trimeric Lewis X.

de Geus DC, van Roon AM, Thomassen EA, Hokke CH, Deelder AM, Abrahams JP.

Proteins. 2009 Aug 1;76(2):439-47. doi: 10.1002/prot.22356.

PMID:
19173313
45.

Recycling of aborted ribosomal 50S subunit-nascent chain-tRNA complexes by the heat shock protein Hsp15.

Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, de Geus DC, Plaisier JR, Abrahams JP.

J Mol Biol. 2009 Mar 13;386(5):1357-67. doi: 10.1016/j.jmb.2008.10.079. Epub 2008 Nov 5.

PMID:
19013177
46.

Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of chlorite dismutase: a detoxifying enzyme producing molecular oxygen.

de Geus DC, Thomassen EA, van der Feltz CL, Abrahams JP.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt 8):730-2. doi: 10.1107/S1744309108020551. Epub 2008 Jul 26.

47.

Microtubule plus-end conformations and dynamics in the periphery of interphase mouse fibroblasts.

Zovko S, Abrahams JP, Koster AJ, Galjart N, Mommaas AM.

Mol Biol Cell. 2008 Jul;19(7):3138-46. doi: 10.1091/mbc.E07-07-0681. Epub 2008 May 14.

48.

Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease.

Paspaleva K, Thomassen E, Pannu NS, Iwai S, Moolenaar GF, Goosen N, Abrahams JP.

Structure. 2007 Oct;15(10):1316-24.

49.

Heterogeneous nucleation of three-dimensional protein nanocrystals.

Georgieva DG, Kuil ME, Oosterkamp TH, Zandbergen HW, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2007 May;63(Pt 5):564-70. Epub 2007 Apr 21.

PMID:
17452781
50.

Malingering on the Social Security disability consultative exam: a new rating scale.

Chafetz MD, Abrahams JP, Kohlmaier J.

Arch Clin Neuropsychol. 2007 Jan;22(1):1-14. Epub 2006 Nov 9.

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