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Items: 28

1.

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J.

Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.

PMID:
31043755
2.

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination.

Leal-Bertioli SCM, Godoy IJ, Santos JF, Doyle JJ, Guimarães PM, Abernathy BL, Jackson SA, Moretzsohn MC, Bertioli DJ.

Am J Bot. 2018 Jun;105(6):1053-1066. doi: 10.1002/ajb2.1112. Epub 2018 Jul 9.

3.

Genic C-Methylation in Soybean Is Associated with Gene Paralogs Relocated to Transposable Element-Rich Pericentromeres.

El Baidouri M, Kim KD, Abernathy B, Li YH, Qiu LJ, Jackson SA.

Mol Plant. 2018 Mar 5;11(3):485-495. doi: 10.1016/j.molp.2018.02.006. Epub 2018 Feb 21.

4.

Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.

Gao D, Chu Y, Xia H, Xu C, Heyduk K, Abernathy B, Ozias-Akins P, Leebens-Mack JH, Jackson SA.

Mol Biol Evol. 2018 Feb 1;35(2):354-364. doi: 10.1093/molbev/msx275.

5.

Cruciferous vegetables and colorectal cancer prevention through microRNA regulation: A review.

Pan JH, Abernathy B, Kim YJ, Lee JH, Kim JH, Shin EC, Kim JK.

Crit Rev Food Sci Nutr. 2018;58(12):2026-2038. doi: 10.1080/10408398.2017.1300134. Epub 2017 Jun 12. Review.

PMID:
28394633
6.

Improved drought tolerance in wheat plants overexpressing a synthetic bacterial cold shock protein gene SeCspA.

Yu TF, Xu ZS, Guo JK, Wang YX, Abernathy B, Fu JD, Chen X, Zhou YB, Chen M, Ye XG, Ma YZ.

Sci Rep. 2017 Mar 10;7:44050. doi: 10.1038/srep44050.

7.

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut.

Clevenger J, Chu Y, Chavarro C, Agarwal G, Bertioli DJ, Leal-Bertioli SCM, Pandey MK, Vaughn J, Abernathy B, Barkley NA, Hovav R, Burow M, Nayak SN, Chitikineni A, Isleib TG, Holbrook CC, Jackson SA, Varshney RK, Ozias-Akins P.

Mol Plant. 2017 Feb 13;10(2):309-322. doi: 10.1016/j.molp.2016.11.015. Epub 2016 Dec 18.

8.

Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris).

Gao D, Zhao D, Abernathy B, Iwata-Otsubo A, Herrera-Estrella A, Jiang N, Jackson SA.

G3 (Bethesda). 2016 Jul 7;6(7):2091-101. doi: 10.1534/g3.116.028761.

9.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.

PMID:
26901068
10.

Fluorescence In Situ Hybridization (FISH)-Based Karyotyping Reveals Rapid Evolution of Centromeric and Subtelomeric Repeats in Common Bean (Phaseolus vulgaris) and Relatives.

Iwata-Otsubo A, Radke B, Findley S, Abernathy B, Vallejos CE, Jackson SA.

G3 (Bethesda). 2016 Apr 7;6(4):1013-22. doi: 10.1534/g3.115.024984.

11.

Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.

Gao D, Li Y, Kim KD, Abernathy B, Jackson SA.

Genome Biol. 2016 Jan 18;17:7. doi: 10.1186/s13059-015-0867-y.

12.

A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean.

Kim KD, El Baidouri M, Abernathy B, Iwata-Otsubo A, Chavarro C, Gonzales M, Libault M, Grimwood J, Jackson SA.

Plant Physiol. 2015 Aug;168(4):1433-47. doi: 10.1104/pp.15.00408. Epub 2015 Jul 6.

13.

TILLING by sequencing to identify induced mutations in stress resistance genes of peanut (Arachis hypogaea).

Guo Y, Abernathy B, Zeng Y, Ozias-Akins P.

BMC Genomics. 2015 Mar 7;16:157. doi: 10.1186/s12864-015-1348-0.

14.

A new approach for annotation of transposable elements using small RNA mapping.

El Baidouri M, Kim KD, Abernathy B, Arikit S, Maumus F, Panaud O, Meyers BC, Jackson SA.

Nucleic Acids Res. 2015 Jul 27;43(13):e84. doi: 10.1093/nar/gkv257. Epub 2015 Mar 26.

15.

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis.

Leal-Bertioli S, Shirasawa K, Abernathy B, Moretzsohn M, Chavarro C, Clevenger J, Ozias-Akins P, Jackson S, Bertioli D.

Genetics. 2015 Apr;199(4):1093-105. doi: 10.1534/genetics.115.174607. Epub 2015 Feb 20.

16.

Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidance.

Shin JH, Vaughn JN, Abdel-Haleem H, Chavarro C, Abernathy B, Kim KD, Jackson SA, Li Z.

BMC Plant Biol. 2015 Feb 3;15:26. doi: 10.1186/s12870-015-0422-8.

17.

Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris).

Gao D, Abernathy B, Rohksar D, Schmutz J, Jackson SA.

Front Plant Sci. 2014 Jul 11;5:339. doi: 10.3389/fpls.2014.00339. eCollection 2014.

18.

A reference genome for common bean and genome-wide analysis of dual domestications.

Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA.

Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8.

19.

Identification and characterization of functional centromeres of the common bean.

Iwata A, Tek AL, Richard MM, Abernathy B, Fonsêca A, Schmutz J, Chen NW, Thareau V, Magdelenat G, Li Y, Murata M, Pedrosa-Harand A, Geffroy V, Nagaki K, Jackson SA.

Plant J. 2013 Oct;76(1):47-60. doi: 10.1111/tpj.12269. Epub 2013 Aug 5.

20.

Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).

Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA.

G3 (Bethesda). 2012 Mar;2(3):321-9. doi: 10.1534/g3.111.001834. Epub 2012 Mar 1.

21.

Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).

Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK.

DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12.

22.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
23.

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.

Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, Ammiraju JS, Kudrna D, Kim HR, Ware D, Wing RA, San Miguel P, Jackson SA.

BMC Genomics. 2006 Aug 8;7:199.

24.

Laser ureterolithotripsy for cystine calculi.

Adams DH, Abernathy BB.

AORN J. 1996 Dec;64(6):924-30.

PMID:
8960680
25.

Smooth-muscle myosin heavy-chain isoform expression in bladder-outlet obstruction.

Cher ML, Abernathy BB, McConnell JD, Zimmern PE, Lin VK.

World J Urol. 1996;14(5):295-300.

PMID:
8912469
26.

Relative importance of venous and arterial resistances in controlling venous return and cardiac output.

GUYTON AC, ABERNATHY B, LANGSTON JB, KAUFMANN BN, FAIRCHILD HM.

Am J Physiol. 1959 May;196(5):1008-14. No abstract available.

PMID:
13649920
27.

Mechanism of the increased venous return and cardiac output caused by epinephrine.

Guyton AC, Lindsey AW, Abernathy B, Langston JB.

Am J Physiol. 1958 Jan;192(1):126-30. doi: 10.1152/ajplegacy.1957.192.1.126. No abstract available.

PMID:
13498163
28.

Venous return at various right atrial pressures and the normal venous return curve.

GUYTON AC, LINDSEY AW, ABERNATHY B, RICHARDSON T.

Am J Physiol. 1957 Jun;189(3):609-15. No abstract available.

PMID:
13458395

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