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Items: 1 to 50 of 84

1.

APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations.

Abella JR, Antunes DA, Clementi C, Kavraki LE.

Molecules. 2019 Mar 2;24(5). pii: E881. doi: 10.3390/molecules24050881.

2.

Native State of Complement Protein C3d Analysed via Hydrogen Exchange and Conformational Sampling.

Devaurs D, Papanastasiou M, Antunes DA, Abella JR, Moll M, Ricklin D, Lambris JD, Kavraki LE.

Int J Comput Biol Drug Des. 2018;11(1-2):90-113. doi: 10.1504/IJCBDD.2018.090834. Epub 2018 Mar 24.

3.

Barriers to malaria prevention in US-based travellers visiting friends and relatives abroad: a qualitative study of West African immigrant travellers†.

Walz EJ, Volkman HR, Adedimeji AA, Abella J, Scott LA, Angelo KM, Gaines J, Coyle CM, Dunlop SJ, Wilson D, Biah AP, Wanduragala D, Stauffer WM.

J Travel Med. 2019 Feb 1;26(2). pii: tay163. doi: 10.1093/jtm/tay163.

PMID:
30602033
4.

Quantitative comparison of adaptive sampling methods for protein dynamics.

Hruska E, Abella JR, Nüske F, Kavraki LE, Clementi C.

J Chem Phys. 2018 Dec 28;149(24):244119. doi: 10.1063/1.5053582.

PMID:
30599712
5.

Structure-based Methods for Binding Mode and Binding Affinity Prediction for Peptide-MHC Complexes.

Antunes DA, Abella JR, Devaurs D, Rigo MM, Kavraki LE.

Curr Top Med Chem. 2018;18(26):2239-2255. doi: 10.2174/1568026619666181224101744. Review.

6.

Revision of Varanus marathonensis (Squamata, Varanidae) based on historical and new material: morphology, systematics, and paleobiogeography of the European monitor lizards.

Villa A, Abella J, Alba DM, Almécija S, Bolet A, Koufos GD, Knoll F, Luján ÀH, Morales J, Robles JM, Sánchez IM, Delfino M.

PLoS One. 2018 Dec 5;13(12):e0207719. doi: 10.1371/journal.pone.0207719. eCollection 2018.

7.

Novel grafted electrochemical interface for covalent glucose oxidase immobilization using reactive pentafluorophenyl methacrylate.

Artigues M, Oh S, Gilabert-Porres J, Abellà J, Borrós S, Colominas S.

Colloids Surf B Biointerfaces. 2019 Mar 1;175:1-9. doi: 10.1016/j.colsurfb.2018.11.076. Epub 2018 Nov 28.

PMID:
30508760
8.

The first Oligocene sea turtle (Pan-Cheloniidae) record of South America.

Cadena E, Abella J, Gregori M.

PeerJ. 2018 Mar 23;6:e4554. doi: 10.7717/peerj.4554. eCollection 2018.

9.

A new tropical Oligocene dolphin from Montañita/Olón, Santa Elena, Ecuador.

Tanaka Y, Abella J, Aguirre-Fernández G, Gregori M, Fordyce RE.

PLoS One. 2017 Dec 20;12(12):e0188380. doi: 10.1371/journal.pone.0188380. eCollection 2017.

10.

Analytical Parameters of an Amperometric Glucose Biosensor for Fast Analysis in Food Samples.

Artigues M, Abellà J, Colominas S.

Sensors (Basel). 2017 Nov 14;17(11). pii: E2620. doi: 10.3390/s17112620.

11.

Maintaining and Enhancing Diversity of Sampled Protein Conformations in Robotics-Inspired Methods.

Abella JR, Moll M, Kavraki LE.

J Comput Biol. 2018 Jan;25(1):3-20. doi: 10.1089/cmb.2017.0164. Epub 2017 Oct 16.

12.

Myofibril contraction and crosslinking drive nuclear movement to the periphery of skeletal muscle.

Roman W, Martins JP, Carvalho FA, Voituriez R, Abella JVG, Santos NC, Cadot B, Way M, Gomes ER.

Nat Cell Biol. 2017 Oct;19(10):1189-1201. doi: 10.1038/ncb3605. Epub 2017 Sep 11.

13.

New findings of Pleistocene fossil turtles (Geoemydidae, Kinosternidae and Chelydridae) from Santa Elena Province, Ecuador.

Cadena EA, Abella J, Gregori MD.

PeerJ. 2017 Apr 20;5:e3215. doi: 10.7717/peerj.3215. eCollection 2017.

14.

Techno-Economic Evaluation of Technologies to Mitigate Greenhouse Gas Emissions at North American Refineries.

Motazedi K, Abella JP, Bergerson JA.

Environ Sci Technol. 2017 Feb 7;51(3):1918-1928. doi: 10.1021/acs.est.6b04606. Epub 2017 Jan 18.

PMID:
28001370
15.

Dedifferentiated Human Articular Chondrocytes Redifferentiate to a Cartilage-Like Tissue Phenotype in a Poly(ε-Caprolactone)/Self-Assembling Peptide Composite Scaffold.

Recha-Sancho L, Moutos FT, Abellà J, Guilak F, Semino CE.

Materials (Basel). 2016 Jun 17;9(6). pii: E472. doi: 10.3390/ma9060472.

16.

Megalictis, the Bone-Crushing Giant Mustelid (Carnivora, Mustelidae, Oligobuninae) from the Early Miocene of North America.

Valenciano A, Baskin JA, Abella J, Pérez-Ramos A, Álvarez-Sierra MÁ, Morales J, Hartstone-Rose A.

PLoS One. 2016 Apr 7;11(4):e0152430. doi: 10.1371/journal.pone.0152430. eCollection 2016.

17.

Actin'g against the Ball and Chain.

Abella JVG, Way M.

Dev Cell. 2016 Apr 4;37(1):11-12. doi: 10.1016/j.devcel.2016.03.014.

18.

Isoform diversity in the Arp2/3 complex determines actin filament dynamics.

Abella JV, Galloni C, Pernier J, Barry DJ, Kjær S, Carlier MF, Way M.

Nat Cell Biol. 2016 Jan;18(1):76-86. doi: 10.1038/ncb3286. Epub 2015 Dec 14.

PMID:
26655834
19.

First record of Mesopithecus (Cercopithecidae, Colobinae) from the Miocene of the Iberian Peninsula.

Alba DM, Montoya P, Pina M, Rook L, Abella J, Morales J, Delson E.

J Hum Evol. 2015 Nov;88:1-14. doi: 10.1016/j.jhevol.2015.08.003. Epub 2015 Sep 11.

PMID:
26553814
20.

Integron diversity in bacterial communities of freshwater sediments at different contamination levels.

Abella J, Fahy A, Duran R, Cagnon C.

FEMS Microbiol Ecol. 2015 Dec;91(12). pii: fiv140. doi: 10.1093/femsec/fiv140. Epub 2015 Nov 8.

PMID:
26552833
21.

Integron diversity in marine environments.

Abella J, Bielen A, Huang L, Delmont TO, Vujaklija D, Duran R, Cagnon C.

Environ Sci Pollut Res Int. 2015 Oct;22(20):15360-9. doi: 10.1007/s11356-015-5085-3. Epub 2015 Jul 28. Review.

PMID:
26213132
22.

Tracing the origin of the panda's thumb.

Abella J, Pérez-Ramos A, Valenciano A, Alba DM, Ercoli MD, Hontecillas D, Montoya P, Morales J.

Naturwissenschaften. 2015 Jun;102(5-6):35. doi: 10.1007/s00114-015-1286-3. Epub 2015 Jun 3.

PMID:
26036823
23.

Open source software for quantification of cell migration, protrusions, and fluorescence intensities.

Barry DJ, Durkin CH, Abella JV, Way M.

J Cell Biol. 2015 Apr 13;209(1):163-80. doi: 10.1083/jcb.201501081. Epub 2015 Apr 6.

24.

Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

Duran R, Bonin P, Jezequel R, Dubosc K, Gassie C, Terrisse F, Abella J, Cagnon C, Militon C, Michotey V, Gilbert F, Cuny P, Cravo-Laureau C.

Environ Sci Pollut Res Int. 2015 Oct;22(20):15248-59. doi: 10.1007/s11356-015-4373-2. Epub 2015 Apr 7.

PMID:
25847440
25.

Improved reclassification of mortality risk by assessment of physical activity in patients referred for exercise testing.

Myers J, Nead KT, Chang P, Abella J, Kokkinos P, Leeper NJ.

Am J Med. 2015 Apr;128(4):396-402. doi: 10.1016/j.amjmed.2014.10.061. Epub 2014 Dec 12.

PMID:
25511076
26.

Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force Field.

Abella JR, Cheng SY, Wang Q, Yang W, Ren P.

J Chem Theory Comput. 2014 Jul 8;10(7):2792-2801. Epub 2014 May 9.

27.

[Functional neuroimaging in the diagnosis of patients with Parkinsonism: Update and recommendations for clinical use].

Arbizu J, Luquin MR, Abella J, de la Fuente-Fernández R, Fernandez-Torrón R, García-Solís D, Garrastachu P, Jiménez-Hoyuela JM, Llaneza M, Lomeña F, Lorenzo-Bosquet C, Martí MJ, Martinez-Castrillo JC, Mir P, Mitjavila M, Ruiz-Martínez J, Vela L.

Rev Esp Med Nucl Imagen Mol. 2014 Jul-Aug;33(4):215-26. doi: 10.1016/j.remn.2014.02.001. Epub 2014 Apr 14. Review. Spanish.

PMID:
24731551
28.

On the socio-sexual behaviour of the extinct Ursid Indarctos arctoides: an approach based on its baculum size and morphology.

Abella J, Valenciano A, Pérez-Ramos A, Montoya P, Morales J.

PLoS One. 2013 Sep 18;8(9):e73711. doi: 10.1371/journal.pone.0073711. eCollection 2013.

29.

50 years of computer simulation of the human thermoregulatory system.

Hensley DW, Mark AE, Abella JR, Netscher GM, Wissler EH, Diller KR.

J Biomech Eng. 2013 Feb;135(2):021006. doi: 10.1115/1.4023383.

PMID:
23445051
30.

Cardiopulmonary and noninvasive hemodynamic responses to exercise predict outcomes in heart failure.

Myers J, Wong M, Adhikarla C, Boga M, Challa S, Abella J, Ashley EA.

J Card Fail. 2013 Feb;19(2):101-7. doi: 10.1016/j.cardfail.2012.11.010.

PMID:
23384635
31.

Kretzoiarctos gen. nov., the oldest member of the giant panda clade.

Abella J, Alba DM, Robles JM, Valenciano A, Rotgers C, Carmona R, Montoya P, Morales J.

PLoS One. 2012;7(11):e48985. doi: 10.1371/journal.pone.0048985. Epub 2012 Nov 14.

32.

Model to investigate energy and greenhouse gas emissions implications of refining petroleum: impacts of crude quality and refinery configuration.

Abella JP, Bergerson JA.

Environ Sci Technol. 2012 Dec 18;46(24):13037-47. doi: 10.1021/es3018682. Epub 2012 Dec 7.

PMID:
23013493
33.

G-actin regulates the shuttling and PP1 binding of the RPEL protein Phactr1 to control actomyosin assembly.

Wiezlak M, Diring J, Abella J, Mouilleron S, Way M, McDonald NQ, Treisman R.

J Cell Sci. 2012 Dec 1;125(Pt 23):5860-72. doi: 10.1242/jcs.112078. Epub 2012 Sep 12.

34.

Protein-tyrosine phosphatase 1B modulates early endosome fusion and trafficking of Met and epidermal growth factor receptors.

Sangwan V, Abella J, Lai A, Bertos N, Stuible M, Tremblay ML, Park M.

J Biol Chem. 2011 Dec 30;286(52):45000-13. doi: 10.1074/jbc.M111.270934. Epub 2011 Nov 1.

35.

GGA3 functions as a switch to promote Met receptor recycling, essential for sustained ERK and cell migration.

Parachoniak CA, Luo Y, Abella JV, Keen JH, Park M.

Dev Cell. 2011 Jun 14;20(6):751-63. doi: 10.1016/j.devcel.2011.05.007.

36.

Exercise-induced left bundle branch block: prevalence and prognosis.

Stein R, Ho M, Oliveira CM, Ribeiro JP, Lata K, Abella J, Olson H, Myers J, Froelicher V.

Arq Bras Cardiol. 2011 Jul;97(1):26-32. Epub 2011 May 6. English, Portuguese, Spanish.

37.

[Descriptive analysis of the use of atypical antipsychotics under compassionate-use in a health area in Ferrol (La Coruña, Spain)].

Santos-García D, Macías M, Casás-Martínez A, Llaneza M, Abella J, Aneiros A, Santos H, Domínguez-Urbistondo G, Salazar-Laya B.

Neurologia. 2010 Jun;25(5):300-8. Spanish.

38.

Cardiopulmonary exercise testing is equally prognostic in young, middle-aged and older individuals diagnosed with heart failure.

Arena R, Myers J, Abella J, Pinkstaff S, Brubaker P, Kitzman DW, Peberdy MA, Bensimhon D, Chase P, Guazzi M.

Int J Cardiol. 2011 Sep 15;151(3):278-83. doi: 10.1016/j.ijcard.2010.05.056. Epub 2010 Jun 30.

39.

Dorsal ruffle microdomains potentiate Met receptor tyrosine kinase signaling and down-regulation.

Abella JV, Parachoniak CA, Sangwan V, Park M.

J Biol Chem. 2010 Aug 6;285(32):24956-67. doi: 10.1074/jbc.M110.127985. Epub 2010 Jun 7.

40.

PTP1B targets the endosomal sorting machinery: dephosphorylation of regulatory sites on the endosomal sorting complex required for transport component STAM2.

Stuible M, Abella JV, Feldhammer M, Nossov M, Sangwan V, Blagoev B, Park M, Tremblay ML.

J Biol Chem. 2010 Jul 30;285(31):23899-907. doi: 10.1074/jbc.M110.115295. Epub 2010 May 26.

41.

The Gab1 scaffold regulates RTK-dependent dorsal ruffle formation through the adaptor Nck.

Abella JV, Vaillancourt R, Frigault MM, Ponzo MG, Zuo D, Sangwan V, Larose L, Park M.

J Cell Sci. 2010 Apr 15;123(Pt 8):1306-19. doi: 10.1242/jcs.062570. Epub 2010 Mar 23.

42.

Defining the optimal prognostic window for cardiopulmonary exercise testing in patients with heart failure.

Arena R, Myers J, Abella J, Pinkstaff S, Brubaker P, Kitzman D, Peberdy MA, Bensimhon D, Chase P, Forman DE, Guazzi M.

Circ Heart Fail. 2010 May;3(3):405-11. doi: 10.1161/CIRCHEARTFAILURE.109.906446. Epub 2010 Mar 3.

43.

Prognostic significance of the oxygen uptake efficiency slope: percent-predicted versus actual value.

Arena R, Myers J, Abella J, Pinkstaff S, Brubaker P, Kitzman D, Peberdy MA, Bensimhon D, Chase P, Guazzi M.

Am J Cardiol. 2010 Mar 1;105(5):757-8. doi: 10.1016/j.amjcard.2009.10.004. No abstract available.

44.

Prevalence and prognostic significance of exercise-induced right bundle branch block.

Stein R, Nguyen P, Abella J, Olson H, Myers J, Froelicher V.

Am J Cardiol. 2010 Mar 1;105(5):677-80. doi: 10.1016/j.amjcard.2009.10.050.

PMID:
20185016
45.

Characterizing differences in mortality at the low end of the fitness spectrum in individuals with cardiovascular disease.

Mandic S, Myers J, Oliveira RB, Abella J, Froelicher VF.

Eur J Cardiovasc Prev Rehabil. 2010 Jun;17(3):289-95. doi: 10.1097/HJR.0b013e32833163e2.

PMID:
19940779
46.

Prognostic characteristics of heart rate recovery according to sex in patients with heart failure.

Arena R, Myers J, Abella J, Pinkstaff S, Peberdy MA, Bensimhon D, Chase P, Guazzi M.

Int J Cardiol. 2010 Nov 19;145(2):293-294. doi: 10.1016/j.ijcard.2009.09.562. Epub 2009 Nov 12.

PMID:
19910060
47.

Determining the preferred percent-predicted equation for peak oxygen consumption in patients with heart failure.

Arena R, Myers J, Abella J, Pinkstaff S, Brubaker P, Moore B, Kitzman D, Peberdy MA, Bensimhon D, Chase P, Forman D, West E, Guazzi M.

Circ Heart Fail. 2009 Mar;2(2):113-20. doi: 10.1161/CIRCHEARTFAILURE.108.834168. Epub 2009 Feb 10.

48.

Influence of etiology of heart failure on the obesity paradox.

Arena R, Myers J, Abella J, Pinkstaff S, Brubaker P, Moore B, Kitzman D, Peberdy MA, Bensimhon D, Chase P, Forman D, West E, Guazzi M.

Am J Cardiol. 2009 Oct 15;104(8):1116-21. doi: 10.1016/j.amjcard.2009.05.059. Epub 2009 Aug 28.

49.

Crosstalk in Met receptor oncogenesis.

Lai AZ, Abella JV, Park M.

Trends Cell Biol. 2009 Oct;19(10):542-51. doi: 10.1016/j.tcb.2009.07.002. Epub 2009 Sep 14. Review.

PMID:
19758803
50.

Does peak oxygen pulse complement peak oxygen uptake in risk stratifying patients with heart failure?

Oliveira RB, Myers J, Araújo CG, Arena R, Mandic S, Bensimhon D, Abella J, Chase P, Guazzi M, Brubaker P, Moore B, Kitzman D, Peberdy MA.

Am J Cardiol. 2009 Aug 15;104(4):554-8. doi: 10.1016/j.amjcard.2009.04.022. Epub 2009 Jun 18.

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