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Long-chain vitamin K2 production in Lactococcus lactis is influenced by temperature, carbon source, aeration and mode of energy metabolism.

Liu Y, van Bennekom EO, Zhang Y, Abee T, Smid EJ.

Microb Cell Fact. 2019 Aug 6;18(1):129. doi: 10.1186/s12934-019-1179-9.


Dynamic modelling of brewers' yeast and Cyberlindnera fabianii co-culture behaviour for steering fermentation performance.

van Rijswijck IMH, van Mastrigt O, Pijffers G, Wolkers-Rooijackers JCM, Abee T, Zwietering MH, Smid EJ.

Food Microbiol. 2019 Oct;83:113-121. doi: 10.1016/ Epub 2019 May 15.


Aroma formation in retentostat co-cultures of Lactococcus lactis and Leuconostoc mesenteroides.

van Mastrigt O, Egas RA, Abee T, Smid EJ.

Food Microbiol. 2019 Sep;82:151-159. doi: 10.1016/ Epub 2019 Jan 28.


Inactivation of conidia from three Penicillium spp. isolated from fruit juices by conventional and alternative mild preservation technologies and disinfection treatments.

Nierop Groot M, Abee T, van Bokhorst-van de Veen H.

Food Microbiol. 2019 Aug;81:108-114. doi: 10.1016/ Epub 2018 Jun 8.


Application of a partial cell recycling chemostat for continuous production of aroma compounds at near-zero growth rates.

van Mastrigt O, Egas RA, Lillevang SK, Abee T, Smid EJ.

BMC Res Notes. 2019 Mar 25;12(1):173. doi: 10.1186/s13104-019-4213-4.


Delivery of genome editing tools by bacterial extracellular vesicles.

Liu Y, Smid EJ, Abee T, Notebaart RA.

Microb Biotechnol. 2019 Jan;12(1):71-73. doi: 10.1111/1751-7915.13356. Epub 2018 Dec 13.


Large plasmidome of dairy Lactococcus lactis subsp. lactis biovar diacetylactis FM03P encodes technological functions and appears highly unstable.

van Mastrigt O, Di Stefano E, Hartono S, Abee T, Smid EJ.

BMC Genomics. 2018 Aug 17;19(1):620. doi: 10.1186/s12864-018-5005-2.


Gram-Positive Bacterial Extracellular Vesicles and Their Impact on Health and Disease.

Liu Y, Defourny KAY, Smid EJ, Abee T.

Front Microbiol. 2018 Jul 9;9:1502. doi: 10.3389/fmicb.2018.01502. eCollection 2018.


Aroma formation during cheese ripening is best resembled by Lactococcus lactis retentostat cultures.

van Mastrigt O, Gallegos Tejeda D, Kristensen MN, Abee T, Smid EJ.

Microb Cell Fact. 2018 Jul 4;17(1):104. doi: 10.1186/s12934-018-0950-7.


Gene profiling-based phenotyping for identification of cellular parameters that contribute to fitness, stress-tolerance and virulence of Listeria monocytogenes variants.

Koomen J, den Besten HMW, Metselaar KI, Tempelaars MH, Wijnands LM, Zwietering MH, Abee T.

Int J Food Microbiol. 2018 Oct 20;283:14-21. doi: 10.1016/j.ijfoodmicro.2018.06.003. Epub 2018 Jun 7.


Dynamics in Copy Numbers of Five Plasmids of a Dairy Lactococcus lactis Strain under Dairy-Related Conditions Including Near-Zero Growth Rates.

van Mastrigt O, Lommers MMAN, de Vries YC, Abee T, Smid EJ.

Appl Environ Microbiol. 2018 May 17;84(11). pii: e00314-18. doi: 10.1128/AEM.00314-18. Print 2018 Jun 1.


Glycerol metabolism induces Listeria monocytogenes biofilm formation at the air-liquid interface.

Crespo Tapia N, den Besten HMW, Abee T.

Int J Food Microbiol. 2018 May 20;273:20-27. doi: 10.1016/j.ijfoodmicro.2018.03.009. Epub 2018 Mar 15.


Quantitative physiology and aroma formation of a dairy Lactococcus lactis at near-zero growth rates.

van Mastrigt O, Abee T, Lillevang SK, Smid EJ.

Food Microbiol. 2018 Aug;73:216-226. doi: 10.1016/ Epub 2018 Feb 3.


Role of cell surface composition and lysis in static biofilm formation by Lactobacillus plantarum WCFS1.

Fernández Ramírez MD, Nierop Groot MN, Smid EJ, Hols P, Kleerebezem M, Abee T.

Int J Food Microbiol. 2018 Apr 20;271:15-23. doi: 10.1016/j.ijfoodmicro.2018.02.013. Epub 2018 Feb 21.


Citrate, low pH and amino acid limitation induce citrate utilization in Lactococcus lactis biovar diacetylactis.

van Mastrigt O, Mager EE, Jamin C, Abee T, Smid EJ.

Microb Biotechnol. 2018 Mar;11(2):369-380. doi: 10.1111/1751-7915.13031. Epub 2017 Dec 7.


Short communication: Growth of dairy isolates of Geobacillus thermoglucosidans in skim milk depends on lactose degradation products supplied by Anoxybacillus flavithermus as secondary species.

Zhao Y, Kumar M, Caspers MPM, Nierop Groot MN, van der Vossen JMBM, Abee T.

J Dairy Sci. 2018 Feb;101(2):1013-1019. doi: 10.3168/jds.2017-13372. Epub 2017 Nov 15.


Tiny but mighty: bacterial membrane vesicles in food biotechnological applications.

Liu Y, Alexeeva S, Defourny KA, Smid EJ, Abee T.

Curr Opin Biotechnol. 2018 Feb;49:179-184. doi: 10.1016/j.copbio.2017.09.001. Epub 2017 Oct 3. Review.


Performance of non-conventional yeasts in co-culture with brewers' yeast for steering ethanol and aroma production.

van Rijswijck IMH, Wolkers-Rooijackers JCM, Abee T, Smid EJ.

Microb Biotechnol. 2017 Nov;10(6):1591-1602. doi: 10.1111/1751-7915.12717. Epub 2017 Aug 18.


Complete Genome Sequences of Lactococcus lactis subsp. lactis bv. diacetylactis FM03 and Leuconostoc mesenteroides FM06 Isolated from Cheese.

van Mastrigt O, Abee T, Smid EJ.

Genome Announc. 2017 Jul 13;5(28). pii: e00633-17. doi: 10.1128/genomeA.00633-17.


Persistent Listeria monocytogenes strains isolated from mussel production facilities form more biofilm but are not linked to specific genetic markers.

Nowak J, Cruz CD, Tempelaars M, Abee T, van Vliet AHM, Fletcher GC, Hedderley D, Palmer J, Flint S.

Int J Food Microbiol. 2017 Sep 1;256:45-53. doi: 10.1016/j.ijfoodmicro.2017.05.024. Epub 2017 Jun 1.


Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe.

van Rijswijck IM, Derks MF, Abee T, de Ridder D, Smid EJ.

Genome Announc. 2017 Apr 6;5(14). pii: e00064-17. doi: 10.1128/genomeA.00064-17.


Quantitative assessment of viable cells of Lactobacillus plantarum strains in single, dual and multi-strain biofilms.

Fernández Ramírez MD, Kostopoulos I, Smid EJ, Nierop Groot MN, Abee T.

Int J Food Microbiol. 2017 Mar 6;244:43-51. doi: 10.1016/j.ijfoodmicro.2016.12.014. Epub 2016 Dec 29.


Analysis of Germination Capacity and Germinant Receptor (Sub)clusters of Genome-Sequenced Bacillus cereus Environmental Isolates and Model Strains.

Warda AK, Xiao Y, Boekhorst J, Wells-Bennik MHJ, Nierop Groot MN, Abee T.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02490-16. doi: 10.1128/AEM.02490-16. Print 2017 Feb 15.


Isolation and characterization of Lactobacillus helveticus DSM 20075 variants with improved autolytic capacity.

Spus M, Liu H, Wels M, Abee T, Smid EJ.

Int J Food Microbiol. 2017 Jan 16;241:173-180. doi: 10.1016/j.ijfoodmicro.2016.10.020. Epub 2016 Oct 22.


Draft Genome Sequences of Four Thermophilic Spore Formers Isolated from a Dairy-Processing Environment.

Caspers MP, Boekhorst J, de Jong A, Kort R, Nierop Groot M, Abee T.

Genome Announc. 2016 Aug 11;4(4). pii: e00757-16. doi: 10.1128/genomeA.00757-16.


Recovery of Heat Treated Bacillus cereus Spores Is Affected by Matrix Composition and Factors with Putative Functions in Damage Repair.

Warda AK, Tempelaars MH, Abee T, Nierop Groot MN.

Front Microbiol. 2016 Jul 18;7:1096. doi: 10.3389/fmicb.2016.01096. eCollection 2016.


Comparative Genomics of Iron-Transporting Systems in Bacillus cereus Strains and Impact of Iron Sources on Growth and Biofilm Formation.

Hayrapetyan H, Siezen R, Abee T, Nierop Groot M.

Front Microbiol. 2016 Jun 8;7:842. doi: 10.3389/fmicb.2016.00842. eCollection 2016.


Modeling and Validation of the Ecological Behavior of Wild-Type Listeria monocytogenes and Stress-Resistant Variants.

Metselaar KI, Abee T, Zwietering MH, den Besten HM.

Appl Environ Microbiol. 2016 Aug 15;82(17):5389-401. doi: 10.1128/AEM.00442-16. Print 2016 Sep 1.


Draft Whole-Genome Sequences of Three Lactobacillus plantarum Food Isolates.

Fernández Ramírez MD, Boekhorst J, de Jong A, Kuipers OP, Abee T, Nierop Groot MN.

Genome Announc. 2016 Jun 16;4(3). pii: e00560-16. doi: 10.1128/genomeA.00560-16.


Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity.

Warda AK, Siezen RJ, Boekhorst J, Wells-Bennik MH, de Jong A, Kuipers OP, Nierop Groot MN, Abee T.

PLoS One. 2016 Jun 7;11(6):e0156796. doi: 10.1371/journal.pone.0156796. eCollection 2016.


Draft Whole-Genome Sequences of 11 Bacillus cereus Food Isolates.

Hayrapetyan H, Boekhorst J, de Jong A, Kuipers OP, Nierop Groot MN, Abee T.

Genome Announc. 2016 Jun 2;4(3). pii: e00485-16. doi: 10.1128/genomeA.00485-16.


Bacterial Spores in Food: Survival, Emergence, and Outgrowth.

Wells-Bennik MH, Eijlander RT, den Besten HM, Berendsen EM, Warda AK, Krawczyk AO, Nierop Groot MN, Xiao Y, Zwietering MH, Kuipers OP, Abee T.

Annu Rev Food Sci Technol. 2016;7:457-82. doi: 10.1146/annurev-food-041715-033144. Review.


Identification of CdnL, a Putative Transcriptional Regulator Involved in Repair and Outgrowth of Heat-Damaged Bacillus cereus Spores.

Warda AK, Tempelaars MH, Boekhorst J, Abee T, Nierop Groot MN.

PLoS One. 2016 Feb 5;11(2):e0148670. doi: 10.1371/journal.pone.0148670. eCollection 2016.


Impact of Pathogen Population Heterogeneity and Stress-Resistant Variants on Food Safety.

Abee T, Koomen J, Metselaar KI, Zwietering MH, den Besten HM.

Annu Rev Food Sci Technol. 2016;7:439-56. doi: 10.1146/annurev-food-041715-033128. Epub 2016 Jan 11. Review.


Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production.

Hayrapetyan H, Tempelaars M, Nierop Groot M, Abee T.

PLoS One. 2015 Aug 4;10(8):e0134872. doi: 10.1371/journal.pone.0134872. eCollection 2015.


Amplicon sequencing for the quantification of spoilage microbiota in complex foods including bacterial spores.

de Boer P, Caspers M, Sanders JW, Kemperman R, Wijman J, Lommerse G, Roeselers G, Montijn R, Abee T, Kort R.

Microbiome. 2015 Jul 27;3:30. doi: 10.1186/s40168-015-0096-3. eCollection 2015.


Strain diversity and phage resistance in complex dairy starter cultures.

Spus M, Li M, Alexeeva S, Wolkers-Rooijackers JC, Zwietering MH, Abee T, Smid EJ.

J Dairy Sci. 2015 Aug;98(8):5173-82. doi: 10.3168/jds.2015-9535. Epub 2015 May 28.


Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU.

Metselaar KI, den Besten HM, Boekhorst J, van Hijum SA, Zwietering MH, Abee T.

Front Microbiol. 2015 May 8;6:422. doi: 10.3389/fmicb.2015.00422. eCollection 2015.


Involvement of the CasK/R two-component system in optimal unsaturation of the Bacillus cereus fatty acids during low-temperature growth.

Diomandé SE, Nguyen-the C, Abee T, Tempelaars MH, Broussolle V, Brillard J.

Int J Food Microbiol. 2015 Nov 20;213:110-7. doi: 10.1016/j.ijfoodmicro.2015.04.043. Epub 2015 May 5.


Characterisation of biofilms formed by Lactobacillus plantarum WCFS1 and food spoilage isolates.

Fernández Ramírez MD, Smid EJ, Abee T, Nierop Groot MN.

Int J Food Microbiol. 2015 Aug 17;207:23-9. doi: 10.1016/j.ijfoodmicro.2015.04.030. Epub 2015 Apr 24.


Performance of stress resistant variants of Listeria monocytogenes in mixed species biofilms with Lactobacillus plantarum.

Metselaar KI, Saá Ibusquiza P, Ortiz Camargo AR, Krieg M, Zwietering MH, den Besten HM, Abee T.

Int J Food Microbiol. 2015 Nov 20;213:24-30. doi: 10.1016/j.ijfoodmicro.2015.04.021. Epub 2015 Apr 19.


Influence of food matrix on outgrowth heterogeneity of heat damaged Bacillus cereus spores.

Warda AK, den Besten HM, Sha N, Abee T, Nierop Groot MN.

Int J Food Microbiol. 2015 May 18;201:27-34. doi: 10.1016/j.ijfoodmicro.2015.02.010. Epub 2015 Feb 14.


Comparative analysis of biofilm formation by Bacillus cereus reference strains and undomesticated food isolates and the effect of free iron.

Hayrapetyan H, Muller L, Tempelaars M, Abee T, Nierop Groot M.

Int J Food Microbiol. 2015 May 4;200:72-9. doi: 10.1016/j.ijfoodmicro.2015.02.005. Epub 2015 Feb 12.


Inactivation of chemical and heat-resistant spores of Bacillus and Geobacillus by nitrogen cold atmospheric plasma evokes distinct changes in morphology and integrity of spores.

van Bokhorst-van de Veen H, Xie H, Esveld E, Abee T, Mastwijk H, Nierop Groot M.

Food Microbiol. 2015 Feb;45(Pt A):26-33. doi: 10.1016/ Epub 2014 Apr 18.


Differential outgrowth potential of Clostridium perfringens food-borne isolates with various cpe-genotypes in vacuum-packed ground beef during storage at 12°C.

Xiao Y, Wagendorp A, Abee T, Wells-Bennik MH.

Int J Food Microbiol. 2015 Feb 2;194:40-5. doi: 10.1016/j.ijfoodmicro.2014.11.008. Epub 2014 Nov 14.


Nutrient limitation leads to penetrative growth into agar and affects aroma formation in Pichia fabianii, P. kudriavzevii and Saccharomyces cerevisiae.

van Rijswijck IM, Dijksterhuis J, Wolkers-Rooijackers JC, Abee T, Smid EJ.

Yeast. 2015 Jan;32(1):89-101. doi: 10.1002/yea.3050. Epub 2014 Nov 14.


Bacillus subtilis spore protein SpoVAC functions as a mechanosensitive channel.

Velásquez J, Schuurman-Wolters G, Birkner JP, Abee T, Poolman B.

Mol Microbiol. 2014 May;92(4):813-23. doi: 10.1111/mmi.12591. Epub 2014 Apr 16.


Quantification of the impact of single and multiple mild stresses on outgrowth heterogeneity of Bacillus cereus spores.

van Melis CC, den Besten HM, Nierop Groot MN, Abee T.

Int J Food Microbiol. 2014 May 2;177:57-62. doi: 10.1016/j.ijfoodmicro.2014.02.015. Epub 2014 Feb 24.


Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium.

Rosenkrantz JT, Aarts H, Abee T, Rolfe MD, Knudsen GM, Nielsen MB, Thomsen LE, Zwietering MH, Olsen JE, Pin C.

BMC Microbiol. 2013 Dec 17;13:294. doi: 10.1186/1471-2180-13-294.

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