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Items: 1 to 50 of 121

1.

Choroidal melanoma diagnosed by aspiration cytology: A case report with cyto-histologic correlation and review of the literature.

Abbott DW, Simons K, Giorgadze T.

Ann Diagn Pathol. 2019 Jun 22;42:39-41. doi: 10.1016/j.anndiagpath.2019.06.010. [Epub ahead of print]

PMID:
31306857
2.

Structural analysis of broiler chicken small intestinal mucin O-glycan modification by Clostridium perfringens.

MacMillan JL, Vicaretti SD, Noyovitz B, Xing X, Low KE, Inglis GD, Zaytsoff SJM, Boraston AB, Smith SP, Uwiera RRE, Selinger LB, Zandberg WF, Abbott DW.

Poult Sci. 2019 Jun 10. pii: pez297. doi: 10.3382/ps/pez297. [Epub ahead of print]

PMID:
31180129
3.

Crystal Structures of the Full-Length Murine and Human Gasdermin D Reveal Mechanisms of Autoinhibition, Lipid Binding, and Oligomerization.

Liu Z, Wang C, Yang J, Zhou B, Yang R, Ramachandran R, Abbott DW, Xiao TS.

Immunity. 2019 Jul 16;51(1):43-49.e4. doi: 10.1016/j.immuni.2019.04.017. Epub 2019 May 13.

PMID:
31097341
4.

Single cell fluorescence imaging of glycan uptake by intestinal bacteria.

Hehemann JH, Reintjes G, Klassen L, Smith AD, Ndeh D, Arnosti C, Amann R, Abbott DW.

ISME J. 2019 Jul;13(7):1883-1889. doi: 10.1038/s41396-019-0406-z. Epub 2019 Apr 1.

PMID:
30936421
5.

TLR-stimulated IRAKM activates caspase-8 inflammasome in microglia and promotes neuroinflammation.

Zhang CJ, Jiang M, Zhou H, Liu W, Wang C, Kang Z, Han B, Zhang Q, Chen X, Xiao J, Fisher A, Kaiser WJ, Murayama MA, Iwakura Y, Gao J, Carman J, Dongre A, Dubyak G, Abbott DW, Shi FD, Ransohoff RM, Li X.

J Clin Invest. 2018 Dec 3;128(12):5399-5412. doi: 10.1172/JCI121901. Epub 2018 Oct 29.

6.

Homophilic CD44 Interactions Mediate Tumor Cell Aggregation and Polyclonal Metastasis in Patient-Derived Breast Cancer Models.

Liu X, Taftaf R, Kawaguchi M, Chang YF, Chen W, Entenberg D, Zhang Y, Gerratana L, Huang S, Patel DB, Tsui E, Adorno-Cruz V, Chirieleison SM, Cao Y, Harney AS, Patel S, Patsialou A, Shen Y, Avril S, Gilmore HL, Lathia JD, Abbott DW, Cristofanilli M, Condeelis JS, Liu H.

Cancer Discov. 2019 Jan;9(1):96-113. doi: 10.1158/2159-8290.CD-18-0065. Epub 2018 Oct 25.

PMID:
30361447
7.

IL-33 promotes recovery from acute colitis by inducing miR-320 to stimulate epithelial restitution and repair.

Lopetuso LR, De Salvo C, Pastorelli L, Rana N, Senkfor HN, Petito V, Di Martino L, Scaldaferri F, Gasbarrini A, Cominelli F, Abbott DW, Goodman WA, Pizarro TT.

Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):E9362-E9370. doi: 10.1073/pnas.1803613115. Epub 2018 Sep 17.

8.

Chemical disruption of the pyroptotic pore-forming protein gasdermin D inhibits inflammatory cell death and sepsis.

Rathkey JK, Zhao J, Liu Z, Chen Y, Yang J, Kondolf HC, Benson BL, Chirieleison SM, Huang AY, Dubyak GR, Xiao TS, Li X, Abbott DW.

Sci Immunol. 2018 Aug 24;3(26). pii: eaat2738. doi: 10.1126/sciimmunol.aat2738.

9.

Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates.

Gruninger RJ, Nguyen TTM, Reid ID, Yanke JL, Wang P, Abbott DW, Tsang A, McAllister T.

Front Microbiol. 2018 Jul 16;9:1581. doi: 10.3389/fmicb.2018.01581. eCollection 2018.

10.

Unique BIR domain sets determine inhibitor of apoptosis protein-driven cell death and NOD2 complex signal specificity.

Chirieleison SM, Rathkey JK, Abbott DW.

Sci Signal. 2018 Jul 17;11(539). pii: eaao3964. doi: 10.1126/scisignal.aao3964.

11.

Mechanism of gasdermin D recognition by inflammatory caspases and their inhibition by a gasdermin D-derived peptide inhibitor.

Yang J, Liu Z, Wang C, Yang R, Rathkey JK, Pinkard OW, Shi W, Chen Y, Dubyak GR, Abbott DW, Xiao TS.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6792-6797. doi: 10.1073/pnas.1800562115. Epub 2018 Jun 11.

12.

Saccharification efficiencies of multi-enzyme complexes produced by aerobic fungi.

Badhan A, Huang J, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister T.

N Biotechnol. 2018 Nov 25;46:1-6. doi: 10.1016/j.nbt.2018.05.003. Epub 2018 May 24.

PMID:
29803771
13.

Identification of novel enzymes to enhance the ruminal digestion of barley straw.

Badhan A, Ribeiro GO Jr, Jones DR, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister TA.

Bioresour Technol. 2018 Jul;260:76-84. doi: 10.1016/j.biortech.2018.03.086. Epub 2018 Mar 28.

PMID:
29621684
14.

Structures of the Gasdermin D C-Terminal Domains Reveal Mechanisms of Autoinhibition.

Liu Z, Wang C, Rathkey JK, Yang J, Dubyak GR, Abbott DW, Xiao TS.

Structure. 2018 May 1;26(5):778-784.e3. doi: 10.1016/j.str.2018.03.002. Epub 2018 Mar 22.

15.

Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.

Pluvinage B, Grondin JM, Amundsen C, Klassen L, Moote PE, Xiao Y, Thomas D, Pudlo NA, Anele A, Martens EC, Inglis GD, Uwiera RER, Boraston AB, Abbott DW.

Nat Commun. 2018 Mar 13;9(1):1043. doi: 10.1038/s41467-018-03366-x.

16.

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.

Jones DR, Thomas D, Alger N, Ghavidel A, Inglis GD, Abbott DW.

Biotechnol Biofuels. 2018 Feb 5;11:27. doi: 10.1186/s13068-018-1027-x. eCollection 2018.

17.

Corrigendum: Complex pectin metabolism by gut bacteria reveals novel catalytic functions.

Ndeh D, Rogowski A, Cartmell A, Luis AS, Baslé A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, Zhu Y, O'Neill MA, Urbanowicz BR, York WS, Davies GJ, Abbott DW, Ralet MC, Martens EC, Henrissat B, Gilbert HJ.

Nature. 2017 Aug 31;548(7669):612. doi: 10.1038/nature23659. Epub 2017 Aug 23.

PMID:
29411780
18.

Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides.

Luis AS, Briggs J, Zhang X, Farnell B, Ndeh D, Labourel A, Baslé A, Cartmell A, Terrapon N, Stott K, Lowe EC, McLean R, Shearer K, Schückel J, Venditto I, Ralet MC, Henrissat B, Martens EC, Mosimann SC, Abbott DW, Gilbert HJ.

Nat Microbiol. 2018 Feb;3(2):210-219. doi: 10.1038/s41564-017-0079-1. Epub 2017 Dec 18.

19.

Removal of the cecum affects intestinal fermentation, enteric bacterial community structure, and acute colitis in mice.

Brown K, Abbott DW, Uwiera RRE, Inglis GD.

Gut Microbes. 2018;9(3):218-235. doi: 10.1080/19490976.2017.1408763. Epub 2018 Mar 13.

20.

Phosphorylation of the E3 ubiquitin protein ligase ITCH diminishes binding to its cognate E2 ubiquitin ligase.

Perez JM, Chen Y, Xiao TS, Abbott DW.

J Biol Chem. 2018 Jan 19;293(3):1100-1105. doi: 10.1074/jbc.RA117.000408. Epub 2017 Dec 6.

21.

ABIN-1 regulates RIPK1 activation by linking Met1 ubiquitylation with Lys63 deubiquitylation in TNF-RSC.

Dziedzic SA, Su Z, Jean Barrett V, Najafov A, Mookhtiar AK, Amin P, Pan H, Sun L, Zhu H, Ma A, Abbott DW, Yuan J.

Nat Cell Biol. 2018 Jan;20(1):58-68. doi: 10.1038/s41556-017-0003-1. Epub 2017 Dec 4.

22.

Butyrate Supplementation at High Concentrations Alters Enteric Bacterial Communities and Reduces Intestinal Inflammation in Mice Infected with Citrobacter rodentium.

Jiminez JA, Uwiera TC, Abbott DW, Uwiera RRE, Inglis GD.

mSphere. 2017 Aug 23;2(4). pii: e00243-17. doi: 10.1128/mSphere.00243-17. eCollection 2017 Jul-Aug.

23.

Live-cell visualization of gasdermin D-driven pyroptotic cell death.

Rathkey JK, Benson BL, Chirieleison SM, Yang J, Xiao TS, Dubyak GR, Huang AY, Abbott DW.

J Biol Chem. 2017 Sep 1;292(35):14649-14658. doi: 10.1074/jbc.M117.797217. Epub 2017 Jul 18.

24.

A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains.

Buchanan CJ, Webb AL, Mutschall SK, Kruczkiewicz P, Barker DOR, Hetman BM, Gannon VPJ, Abbott DW, Thomas JE, Inglis GD, Taboada EN.

Front Microbiol. 2017 Jun 30;8:1224. doi: 10.3389/fmicb.2017.01224. eCollection 2017.

25.

Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates.

Jones DR, Uddin MS, Gruninger RJ, Pham TTM, Thomas D, Boraston AB, Briggs J, Pluvinage B, McAllister TA, Forster RJ, Tsang A, Selinger LB, Abbott DW.

J Biol Chem. 2017 Jul 28;292(30):12606-12620. doi: 10.1074/jbc.M117.789008. Epub 2017 Jun 6.

26.

PTEN loss and p27 loss differ among morphologic patterns of prostate cancer, including cribriform.

Ronen S, Abbott DW, Kravtsov O, Abdelkader A, Xu Y, Banerjee A, Iczkowski KA.

Hum Pathol. 2017 Jul;65:85-91. doi: 10.1016/j.humpath.2017.04.024. Epub 2017 May 10.

PMID:
28504208
27.

Erratum to: The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.

Holman DB, Timsit E, Amat S, Abbott DW, Buret AG, Alexander TW.

BMC Microbiol. 2017 Apr 20;17(1):95. doi: 10.1186/s12866-017-1007-5. No abstract available.

28.

Determining the Localization of Carbohydrate Active Enzymes Within Gram-Negative Bacteria.

McLean R, Inglis GD, Mosimann SC, Uwiera RRE, Abbott DW.

Methods Mol Biol. 2017;1588:199-208. doi: 10.1007/978-1-4939-6899-2_15.

PMID:
28417370
29.

An Improved Kinetic Assay for the Characterization of Metal-Dependent Pectate Lyases.

Jones DR, McLean R, Abbott DW.

Methods Mol Biol. 2017;1588:37-44. doi: 10.1007/978-1-4939-6899-2_4.

PMID:
28417359
30.

Nucleotide-binding oligomerization domain (NOD) signaling defects and cell death susceptibility cannot be uncoupled in X-linked inhibitor of apoptosis (XIAP)-driven inflammatory disease.

Chirieleison SM, Marsh RA, Kumar P, Rathkey JK, Dubyak GR, Abbott DW.

J Biol Chem. 2017 Jun 9;292(23):9666-9679. doi: 10.1074/jbc.M117.781500. Epub 2017 Apr 12.

31.

The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.

Holman DB, Timsit E, Amat S, Abbott DW, Buret AG, Alexander TW.

BMC Microbiol. 2017 Mar 22;17(1):70. doi: 10.1186/s12866-017-0978-6. Erratum in: BMC Microbiol. 2017 Apr 20;17 (1):95.

32.

Complex pectin metabolism by gut bacteria reveals novel catalytic functions.

Ndeh D, Rogowski A, Cartmell A, Luis AS, Baslé A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, Zhu Y, O'Neil MA, Urbanowicz BR, York WS, Davies GJ, Abbott DW, Ralet MC, Martens EC, Henrissat B, Gilbert HJ.

Nature. 2017 Apr 6;544(7648):65-70. doi: 10.1038/nature21725. Epub 2017 Mar 22. Erratum in: Nature. 2017 Aug 31;548(7669):612.

33.

Polysaccharide Utilization Loci: Fueling Microbial Communities.

Grondin JM, Tamura K, Déjean G, Abbott DW, Brumer H.

J Bacteriol. 2017 Jul 11;199(15). pii: e00860-16. doi: 10.1128/JB.00860-16. Print 2017 Aug 1. Review.

34.

Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice.

Jiminez JA, Uwiera TC, Abbott DW, Uwiera RRE, Inglis GD.

Gut Pathog. 2016 Dec 22;8:67. doi: 10.1186/s13099-016-0149-6. eCollection 2016.

35.

Differentiation of pernicious anemia from thrombotic thrombocytopenic purpura: The clinical value of subtle pathologic findings.

Abbott DW, Friedman KD, Karafin MS.

Transfus Apher Sci. 2016 Dec;55(3):318-322. doi: 10.1016/j.transci.2016.08.005. Epub 2016 Sep 28.

PMID:
27765664
36.

Cdk5 disruption attenuates tumor PD-L1 expression and promotes antitumor immunity.

Dorand RD, Nthale J, Myers JT, Barkauskas DS, Avril S, Chirieleison SM, Pareek TK, Abbott DW, Stearns DS, Letterio JJ, Huang AY, Petrosiute A.

Science. 2016 Jul 22;353(6297):399-403. doi: 10.1126/science.aae0477. Epub 2016 Jul 21.

37.

Active Caspase-1 Induces Plasma Membrane Pores That Precede Pyroptotic Lysis and Are Blocked by Lanthanides.

Russo HM, Rathkey J, Boyd-Tressler A, Katsnelson MA, Abbott DW, Dubyak GR.

J Immunol. 2016 Aug 15;197(4):1353-67. doi: 10.4049/jimmunol.1600699. Epub 2016 Jul 6.

38.

KdgF, the missing link in the microbial metabolism of uronate sugars from pectin and alginate.

Hobbs JK, Lee SM, Robb M, Hof F, Barr C, Abe KT, Hehemann JH, McLean R, Abbott DW, Boraston AB.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):6188-93. doi: 10.1073/pnas.1524214113. Epub 2016 May 16.

39.

Synthetic Biology Reveals the Uniqueness of the RIP Kinase Domain.

Chirieleison SM, Kertesy SB, Abbott DW.

J Immunol. 2016 May 15;196(10):4291-7. doi: 10.4049/jimmunol.1502631. Epub 2016 Apr 4.

40.

Contributions of a unique β-clamp to substrate recognition illuminates the molecular basis of exolysis in ferulic acid esterases.

Gruninger RJ, Cote C, McAllister TA, Abbott DW.

Biochem J. 2016 Apr 1;473(7):839-49. doi: 10.1042/BJ20151153.

PMID:
27026397
41.

IL-33 Drives Eosinophil Infiltration and Pathogenic Type 2 Helper T-Cell Immune Responses Leading to Chronic Experimental Ileitis.

De Salvo C, Wang XM, Pastorelli L, Mattioli B, Omenetti S, Buela KA, Chowdhry S, Garg RR, Goodman WA, Rodriguez-Palacios A, Smith DE, Abbott DW, Cominelli F, Bamias G, Xin W, Lee JJ, Vecchi M, Pizarro TT.

Am J Pathol. 2016 Apr;186(4):885-98. doi: 10.1016/j.ajpath.2015.11.028. Epub 2016 Feb 22.

42.

Coevolution of yeast mannan digestion: Convergence of the civilized human diet, distal gut microbiome, and host immunity.

Abbott DW, Martens EC, Gilbert HJ, Cuskin F, Lowe EC.

Gut Microbes. 2015;6(5):334-9. doi: 10.1080/19490976.2015.1091913.

43.

An IκB Kinase-Regulated Feedforward Circuit Prolongs Inflammation.

Perez JM, Chirieleison SM, Abbott DW.

Cell Rep. 2015 Jul 28;12(4):537-44. doi: 10.1016/j.celrep.2015.06.050. Epub 2015 Jul 16.

44.

Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2.

McLean R, Hobbs JK, Suits MD, Tuomivaara ST, Jones DR, Boraston AB, Abbott DW.

J Biol Chem. 2015 Aug 28;290(35):21231-43. doi: 10.1074/jbc.M115.664847. Epub 2015 Jul 9.

45.

Corrigendum: Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism.

Cuskin F, Lowe EC, Temple MJ, Zhu Y, Cameron EA, Pudlo NA, Porter NT, Urs K, Thompson AJ, Cartmell A, Rogowski A, Hamilton BS, Chen R, Tolbert TJ, Piens K, Bracke D, Vervecken W, Hakki Z, Speciale G, Munōz-Munōz JL, Day A, Peña MJ, McLean R, Suits MD, Boraston AB, Atherly T, Ziemer CJ, Williams SJ, Davies GJ, Abbott DW, Martens EC, Gilbert HJ.

Nature. 2015 Apr 16;520(7547):388. doi: 10.1038/nature14334. Epub 2015 Mar 4. No abstract available.

PMID:
25739504
46.

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism.

Cuskin F, Lowe EC, Temple MJ, Zhu Y, Cameron E, Pudlo NA, Porter NT, Urs K, Thompson AJ, Cartmell A, Rogowski A, Hamilton BS, Chen R, Tolbert TJ, Piens K, Bracke D, Vervecken W, Hakki Z, Speciale G, Munōz-Munōz JL, Day A, Peña MJ, McLean R, Suits MD, Boraston AB, Atherly T, Ziemer CJ, Williams SJ, Davies GJ, Abbott DW, Martens EC, Gilbert HJ.

Nature. 2015 Jan 8;517(7533):165-169. doi: 10.1038/nature13995. Erratum in: Nature. 2015 Apr 16;520(7547):388.

47.

In vivo inhibition of RIPK2 kinase alleviates inflammatory disease.

Tigno-Aranjuez JT, Benderitter P, Rombouts F, Deroose F, Bai X, Mattioli B, Cominelli F, Pizarro TT, Hoflack J, Abbott DW.

J Biol Chem. 2014 Oct 24;289(43):29651-64. doi: 10.1074/jbc.M114.591388. Epub 2014 Sep 11.

48.

Using structure to inform carbohydrate binding module function.

Abbott DW, van Bueren AL.

Curr Opin Struct Biol. 2014 Oct;28:32-40. doi: 10.1016/j.sbi.2014.07.004. Epub 2014 Aug 9. Review.

PMID:
25108190
49.
50.

Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts.

Thomas DK, Lone AG, Selinger LB, Taboada EN, Uwiera RR, Abbott DW, Inglis GD.

PLoS One. 2014 Feb 7;9(2):e88229. doi: 10.1371/journal.pone.0088229. eCollection 2014.

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