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Items: 1 to 50 of 92

1.

Machine Learning of Time Series Using Time-Delay Embedding and Precision Annealing.

Ty AJA, Fang Z, Gonzalez RA, Rozdeba PJ, Abarbanel HDI.

Neural Comput. 2019 Oct;31(10):2004-2024. doi: 10.1162/neco_a_01224. Epub 2019 Aug 8.

PMID:
31393828
2.

Machine Learning: Deepest Learning as Statistical Data Assimilation Problems.

Abarbanel HDI, Rozdeba PJ, Shirman S.

Neural Comput. 2018 Aug;30(8):2025-2055. doi: 10.1162/neco_a_01094. Epub 2018 Jun 12.

PMID:
29894650
3.

Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)].

Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D.

Chaos. 2018 Feb;28(2):028102. doi: 10.1063/1.5017246. No abstract available.

PMID:
29495669
4.

Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI.

Wang J, Breen D, Akinin A, Broccard F, Abarbanel HDI, Cauwenberghs G.

IEEE Trans Biomed Circuits Syst. 2017 Dec;11(6):1258-1270. doi: 10.1109/TBCAS.2017.2776198.

PMID:
29324422
5.

A unifying view of synchronization for data assimilation in complex nonlinear networks.

Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D.

Chaos. 2017 Dec;27(12):126802. doi: 10.1063/1.5001816.

PMID:
29289057
6.

Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system.

Kadakia N, Armstrong E, Breen D, Morone U, Daou A, Margoliash D, Abarbanel HD.

Biol Cybern. 2016 Dec;110(6):417-434. Epub 2016 Sep 29.

PMID:
27688218
7.

Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data.

Nogaret A, Meliza CD, Margoliash D, Abarbanel HD.

Sci Rep. 2016 Sep 8;6:32749. doi: 10.1038/srep32749.

8.

Model of the songbird nucleus HVC as a network of central pattern generators.

Armstrong E, Abarbanel HD.

J Neurophysiol. 2016 Nov 1;116(5):2405-2419. doi: 10.1152/jn.00438.2016. Epub 2016 Aug 17.

9.

Systematic variational method for statistical nonlinear state and parameter estimation.

Ye J, Rey D, Kadakia N, Eldridge M, Morone UI, Rozdeba P, Abarbanel HD, Quinn JC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Nov;92(5):052901. doi: 10.1103/PhysRevE.92.052901. Epub 2015 Nov 2.

PMID:
26651756
10.

Basin structure of optimization based state and parameter estimation.

Schumann-Bischoff J, Parlitz U, Abarbanel HD, Kostuk M, Rey D, Eldridge M, Luther S.

Chaos. 2015 May;25(5):053108. doi: 10.1063/1.4920942.

PMID:
26026320
11.

Using waveform information in nonlinear data assimilation.

Rey D, Eldridge M, Morone U, Abarbanel HD, Parlitz U, Schumann-Bischoff J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062916. Epub 2014 Dec 22.

PMID:
25615173
12.

Silicon central pattern generators for cardiac diseases.

Nogaret A, O'Callaghan EL, Lataro RM, Salgado HC, Meliza CD, Duncan E, Abarbanel HD, Paton JF.

J Physiol. 2015 Feb 15;593(4):763-74. doi: 10.1113/jphysiol.2014.282723. Epub 2015 Jan 5. Review.

13.

Estimating the biophysical properties of neurons with intracellular calcium dynamics.

Ye J, Rozdeba PJ, Morone UI, Daou A, Abarbanel HD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun;89(6):062714. Epub 2014 Jun 26.

PMID:
25019821
14.

Estimating parameters and predicting membrane voltages with conductance-based neuron models.

Meliza CD, Kostuk M, Huang H, Nogaret A, Margoliash D, Abarbanel HD.

Biol Cybern. 2014 Aug;108(4):495-516. doi: 10.1007/s00422-014-0615-5. Epub 2014 Jun 25.

PMID:
24962080
15.

Dynamical estimation of neuron and network properties III: network analysis using neuron spike times.

Knowlton C, Meliza CD, Margoliash D, Abarbanel HD.

Biol Cybern. 2014 Jun;108(3):261-73. doi: 10.1007/s00422-014-0601-y. Epub 2014 Apr 24.

PMID:
24760370
16.

Dynamical estimation of neuron and network properties II: Path integral Monte Carlo methods.

Kostuk M, Toth BA, Meliza CD, Margoliash D, Abarbanel HD.

Biol Cybern. 2012 Mar;106(3):155-67. doi: 10.1007/s00422-012-0487-5. Epub 2012 Apr 13.

PMID:
22526358
17.

Dynamic state and parameter estimation applied to neuromorphic systems.

Neftci EO, Toth B, Indiveri G, Abarbanel HD.

Neural Comput. 2012 Jul;24(7):1669-94. doi: 10.1162/NECO_a_00293. Epub 2012 Mar 19.

PMID:
22428591
18.

Dynamical estimation of neuron and network properties I: variational methods.

Toth BA, Kostuk M, Meliza CD, Margoliash D, Abarbanel HD.

Biol Cybern. 2011 Oct;105(3-4):217-37. doi: 10.1007/s00422-011-0459-1. Epub 2011 Oct 11.

19.

Rate maintenance and resonance in the entorhinal cortex.

Haas JS, Kreuz T, Torcini A, Politi A, Abarbanel HD.

Eur J Neurosci. 2010 Dec;32(11):1930-9. doi: 10.1111/j.1460-9568.2010.07455.x. Epub 2010 Oct 29.

PMID:
21044179
20.

Parameter and state estimation of experimental chaotic systems using synchronization.

Quinn JC, Bryant PH, Creveling DR, Klein SR, Abarbanel HD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 2):016201. Epub 2009 Jul 6.

PMID:
19658786
21.

Measuring multiple spike train synchrony.

Kreuz T, Chicharro D, Andrzejak RG, Haas JS, Abarbanel HD.

J Neurosci Methods. 2009 Oct 15;183(2):287-99. doi: 10.1016/j.jneumeth.2009.06.039. Epub 2009 Jul 8.

PMID:
19591867
22.

Brain stem feedback in a computational model of birdsong sequencing.

Gibb L, Gentner TQ, Abarbanel HD.

J Neurophysiol. 2009 Sep;102(3):1763-78. doi: 10.1152/jn.91154.2008. Epub 2009 Jun 24.

23.

Inhibition and recurrent excitation in a computational model of sparse bursting in song nucleus HVC.

Gibb L, Gentner TQ, Abarbanel HD.

J Neurophysiol. 2009 Sep;102(3):1748-62. doi: 10.1152/jn.00670.2007. Epub 2009 Jun 10.

24.

Chemosensor-driven artificial antennal lobe transient dynamics enable fast recognition and working memory.

Muezzinoglu MK, Huerta R, Abarbanel HD, Ryan MA, Rabinovich MI.

Neural Comput. 2009 Apr;21(4):1018-37. doi: 10.1162/neco.2008.05-08-780.

PMID:
19018701
25.

Temporal spike pattern learning.

Talathi SS, Abarbanel HD, Ditto WL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):031918. Epub 2008 Sep 23.

PMID:
18851076
26.

Estimation of parameters in nonlinear systems using balanced synchronization.

Abarbanel HD, Creveling DR, Jeanne JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan;77(1 Pt 2):016208. Epub 2008 Jan 28.

PMID:
18351927
27.

Measuring spike train synchrony.

Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A.

J Neurosci Methods. 2007 Sep 15;165(1):151-61. Epub 2007 Jun 2.

PMID:
17628690
28.

Estimating information rates with confidence intervals in neural spike trains.

Shlens J, Kennel MB, Abarbanel HD, Chichilnisky EJ.

Neural Comput. 2007 Jul;19(7):1683-719.

PMID:
17521276
29.
30.

Spike-timing-dependent plasticity of inhibitory synapses in the entorhinal cortex.

Haas JS, Nowotny T, Abarbanel HD.

J Neurophysiol. 2006 Dec;96(6):3305-13. Epub 2006 Aug 23.

31.

Neural circuitry for recognizing interspike interval sequences.

Abarbanel HD, Talathi SS.

Phys Rev Lett. 2006 Apr 14;96(14):148104. Epub 2006 Apr 13.

32.

From crawling to cognition: analyzing the dynamical interactions among populations of neurons.

Briggman KL, Abarbanel HD, Kristan WB Jr.

Curr Opin Neurobiol. 2006 Apr;16(2):135-44. Epub 2006 Mar 24. Review.

PMID:
16564165
33.

Self-organization in the olfactory system: one shot odor recognition in insects.

Nowotny T, Huerta R, Abarbanel HD, Rabinovich MI.

Biol Cybern. 2005 Dec;93(6):436-46. Epub 2005 Nov 18.

34.

Synaptic plasticity with discrete state synapses.

Abarbanel HD, Talathi SS, Gibb L, Rabinovich MI.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep;72(3 Pt 1):031914. Epub 2005 Sep 22. Erratum in: Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Dec;72(6 Pt 2):069903.

PMID:
16241489
35.

Estimating entropy rates with Bayesian confidence intervals.

Kennel MB, Shlens J, Abarbanel HD, Chichilnisky EJ.

Neural Comput. 2005 Jul;17(7):1531-76.

36.

A network of electronic neural oscillators reproduces the dynamics of the periodically forced pyloric pacemaker group.

Denker M, Szücs A, Pinto RD, Abarbanel HD, Selverston AI.

IEEE Trans Biomed Eng. 2005 May;52(5):792-8.

PMID:
15887528
37.

Dopamine modulation of spike dynamics in bursting neurons.

Szücs A, Abarbanel HD, Rabinovich MI, Selverston AI.

Eur J Neurosci. 2005 Feb;21(3):763-72.

38.

Optical imaging of neuronal populations during decision-making.

Briggman KL, Abarbanel HD, Kristan WB Jr.

Science. 2005 Feb 11;307(5711):896-901.

39.

Dynamical model of birdsong maintenance and control.

Abarbanel HD, Talathi SS, Mindlin G, Rabinovich M, Gibb L.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Nov;70(5 Pt 1):051911. Epub 2004 Nov 22.

PMID:
15600660
40.

Spike timing and synaptic plasticity in the premotor pathway of birdsong.

Abarbanel HD, Gibb L, Mindlin GB, Rabinovich MI, Talathi S.

Biol Cybern. 2004 Sep;91(3):159-67. Epub 2004 Sep 10.

PMID:
15378372
41.

Learning classification in the olfactory system of insects.

Huerta R, Nowotny T, García-Sanchez M, Abarbanel HD, Rabinovich MI.

Neural Comput. 2004 Aug;16(8):1601-40.

PMID:
15228747
42.

Reliability and precision of neural spike timing: simulation of spectrally broadband synaptic inputs.

Szucs A, Vehovszky A, Molnár G, Pinto RD, Abarbanel HD.

Neuroscience. 2004;126(4):1063-73.

PMID:
15207339
43.

Mapping neural architectures onto acoustic features of birdsong.

Abarbanel HD, Gibb L, Mindlin GB, Talathi S.

J Neurophysiol. 2004 Jul;92(1):96-110. Epub 2004 Mar 17.

44.

Enhancement of synchronization in a hybrid neural circuit by spike-timing dependent plasticity.

Nowotny T, Zhigulin VP, Selverston AI, Abarbanel HD, Rabinovich MI.

J Neurosci. 2003 Oct 29;23(30):9776-85.

45.

Decoding temporal information through slow lateral excitation in the olfactory system of insects.

Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD.

J Comput Neurosci. 2003 Sep-Oct;15(2):271-81.

PMID:
14512751
46.

Biophysical model of synaptic plasticity dynamics.

Abarbanel HD, Gibb L, Huerta R, Rabinovich MI.

Biol Cybern. 2003 Sep;89(3):214-26. Epub 2003 Jul 31.

PMID:
14504940
47.

Spatial representation of temporal information through spike-timing-dependent plasticity.

Nowotny T, Rabinovich MI, Abarbanel HD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul;68(1 Pt 1):011908. Epub 2003 Jul 18.

PMID:
12935177
48.

Dynamical synaptic plasticity: a model and connection to some experiments.

Whitehead A, Rabinovich MI, Huerta R, Zhigulin VP, Abarbanel HD.

Biol Cybern. 2003 Mar;88(3):229-35.

PMID:
12647230
49.

Robustness and enhancement of neural synchronization by activity-dependent coupling.

Zhigulin VP, Rabinovich MI, Huerta R, Abarbanel HD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb;67(2 Pt 1):021901. Epub 2003 Feb 6.

PMID:
12636709
50.

Synaptic modulation of the interspike interval signatures of bursting pyloric neurons.

Szucs A, Pinto RD, Rabinovich MI, Abarbanel HD, Selverston AI.

J Neurophysiol. 2003 Mar;89(3):1363-77.

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