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Control of Organ Abscission and Other Cell Separation Processes by Evolutionary Conserved Peptide Signaling.

Shi CL, Alling RM, Hammerstad M, Aalen RB.

Plants (Basel). 2019 Jul 15;8(7). pii: E225. doi: 10.3390/plants8070225. Review.


The dynamics of root cap sloughing in Arabidopsis is regulated by peptide signalling.

Shi CL, von Wangenheim D, Herrmann U, Wildhagen M, Kulik I, Kopf A, Ishida T, Olsson V, Anker MK, Albert M, Butenko MA, Felix G, Sawa S, Claassen M, Friml J, Aalen RB.

Nat Plants. 2018 Aug;4(8):596-604. doi: 10.1038/s41477-018-0212-z. Epub 2018 Jul 30.


In Silico Prediction of Ligand-Binding Sites of Plant Receptor Kinases Using Conservation Mapping.

Orr RJS, Aalen RB.

Methods Mol Biol. 2017;1621:93-105. doi: 10.1007/978-1-4939-7063-6_9.


Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.

Stø IM, Orr RJ, Fooyontphanich K, Jin X, Knutsen JM, Fischer U, Tranbarger TJ, Nordal I, Aalen RB.

Front Plant Sci. 2015 Oct 30;6:931. doi: 10.3389/fpls.2015.00931. eCollection 2015.


Antagonistic peptide technology for functional dissection of CLE peptides revisited.

Czyzewicz N, Wildhagen M, Cattaneo P, Stahl Y, Pinto KG, Aalen RB, Butenko MA, Simon R, Hardtke CS, De Smet I.

J Exp Bot. 2015 Aug;66(17):5367-74. doi: 10.1093/jxb/erv284. Epub 2015 Jun 30.


The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Vie AK, Najafi J, Liu B, Winge P, Butenko MA, Hornslien KS, Kumpf R, Aalen RB, Bones AM, Brembu T.

J Exp Bot. 2015 Aug;66(17):5351-65. doi: 10.1093/jxb/erv285. Epub 2015 Jun 10.


The ASH1-RELATED3 SET-domain protein controls cell division competence of the meristem and the quiescent center of the Arabidopsis primary root.

Kumpf R, Thorstensen T, Rahman MA, Heyman J, Nenseth HZ, Lammens T, Herrmann U, Swarup R, Veiseth SV, Emberland G, Bennett MJ, De Veylder L, Aalen RB.

Plant Physiol. 2014 Oct;166(2):632-43. doi: 10.1104/pp.114.244798. Epub 2014 Jul 17.


Tools and Strategies to Match Peptide-Ligand Receptor Pairs.

Butenko MA, Wildhagen M, Albert M, Jehle A, Kalbacher H, Aalen RB, Felix G.

Plant Cell. 2014 May;26(5):1838-1847. Epub 2014 May 7.


The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure.

Rahman MA, Kristiansen PE, Veiseth SV, Andersen JT, Yap KL, Zhou MM, Sandlie I, Thorstensen T, Aalen RB.

Biochemistry. 2014 Apr 8;53(13):2091-100. doi: 10.1021/bi401436h. Epub 2014 Mar 25.


Maturing peptides open for communication.

Aalen RB.

J Exp Bot. 2013 Dec;64(17):5231-5. doi: 10.1093/jxb/ert378. No abstract available.


IDA: a peptide ligand regulating cell separation processes in Arabidopsis.

Aalen RB, Wildhagen M, Stø IM, Butenko MA.

J Exp Bot. 2013 Dec;64(17):5253-61. doi: 10.1093/jxb/ert338. Epub 2013 Oct 22. Review.


NEVERSHED and INFLORESCENCE DEFICIENT IN ABSCISSION are differentially required for cell expansion and cell separation during floral organ abscission in Arabidopsis thaliana.

Liu B, Butenko MA, Shi CL, Bolivar JL, Winge P, Stenvik GE, Vie AK, Leslie ME, Brembu T, Kristiansen W, Bones AM, Patterson SE, Liljegren SJ, Aalen RB.

J Exp Bot. 2013 Dec;64(17):5345-57. doi: 10.1093/jxb/ert232. Epub 2013 Aug 20.


Floral organ abscission peptide IDA and its HAE/HSL2 receptors control cell separation during lateral root emergence.

Kumpf RP, Shi CL, Larrieu A, Stø IM, Butenko MA, Péret B, Riiser ES, Bennett MJ, Aalen RB.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5235-40. doi: 10.1073/pnas.1210835110. Epub 2013 Mar 11.


Tackling drought stress: receptor-like kinases present new approaches.

Marshall A, Aalen RB, Audenaert D, Beeckman T, Broadley MR, Butenko MA, Caño-Delgado AI, de Vries S, Dresselhaus T, Felix G, Graham NS, Foulkes J, Granier C, Greb T, Grossniklaus U, Hammond JP, Heidstra R, Hodgman C, Hothorn M, Inzé D, Ostergaard L, Russinova E, Simon R, Skirycz A, Stahl Y, Zipfel C, De Smet I.

Plant Cell. 2012 Jun;24(6):2262-78. doi: 10.1105/tpc.112.096677. Epub 2012 Jun 12. Review.


KNAT1, KNAT2 and KNAT6 act downstream in the IDA-HAE/HSL2 signaling pathway to regulate floral organ abscission.

Butenko MA, Shi CL, Aalen RB.

Plant Signal Behav. 2012 Jan;7(1):135-8. doi: 10.4161/psb.7.1.18379.


Arabidopsis class I KNOTTED-like homeobox proteins act downstream in the IDA-HAE/HSL2 floral abscission signaling pathway.

Shi CL, Stenvik GE, Vie AK, Bones AM, Pautot V, Proveniers M, Aalen RB, Butenko MA.

Plant Cell. 2011 Jul;23(7):2553-67. doi: 10.1105/tpc.111.084608. Epub 2011 Jul 8.


SET domain proteins in plant development.

Thorstensen T, Grini PE, Aalen RB.

Biochim Biophys Acta. 2011 Aug;1809(8):407-20. doi: 10.1016/j.bbagrm.2011.05.008. Epub 2011 May 23. Review.


The CW domain, a new histone recognition module in chromatin proteins.

Hoppmann V, Thorstensen T, Kristiansen PE, Veiseth SV, Rahman MA, Finne K, Aalen RB, Aasland R.

EMBO J. 2011 May 18;30(10):1939-52. doi: 10.1038/emboj.2011.108. Epub 2011 Apr 26.


The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis.

Veiseth SV, Rahman MA, Yap KL, Fischer A, Egge-Jacobsen W, Reuter G, Zhou MM, Aalen RB, Thorstensen T.

PLoS Genet. 2011 Mar;7(3):e1001325. doi: 10.1371/journal.pgen.1001325. Epub 2011 Mar 10.


Genome-wide transcript profiling of endosperm without paternal contribution identifies parent-of-origin-dependent regulation of AGAMOUS-LIKE36.

Shirzadi R, Andersen ED, Bjerkan KN, Gloeckle BM, Heese M, Ungru A, Winge P, Koncz C, Aalen RB, Schnittger A, Grini PE.

PLoS Genet. 2011 Feb;7(2):e1001303. doi: 10.1371/journal.pgen.1001303. Epub 2011 Feb 17.


The ASH1 HOMOLOG 2 (ASHH2) histone H3 methyltransferase is required for ovule and anther development in Arabidopsis.

Grini PE, Thorstensen T, Alm V, Vizcay-Barrena G, Windju SS, Jørstad TS, Wilson ZA, Aalen RB.

PLoS One. 2009 Nov 12;4(11):e7817. doi: 10.1371/journal.pone.0007817.


Identification of a putative receptor-ligand pair controlling cell separation in plants.

Stenvik GE, Butenko MA, Aalen RB.

Plant Signal Behav. 2008 Dec;3(12):1109-10.


AtMBD8 is involved in control of flowering time in the C24 ecotype of Arabidopsis thaliana.

Stangeland B, Rosenhave EM, Winge P, Berg A, Amundsen SS, Karabeg M, Mandal A, Bones AM, Grini PE, Aalen RB.

Physiol Plant. 2009 May;136(1):110-26. doi: 10.1111/j.1399-3054.2009.01218.x.


Plant peptides in signalling: looking for new partners.

Butenko MA, Vie AK, Brembu T, Aalen RB, Bones AM.

Trends Plant Sci. 2009 May;14(5):255-63. doi: 10.1016/j.tplants.2009.02.002. Epub 2009 Apr 9.


The EPIP peptide of INFLORESCENCE DEFICIENT IN ABSCISSION is sufficient to induce abscission in arabidopsis through the receptor-like kinases HAESA and HAESA-LIKE2.

Stenvik GE, Tandstad NM, Guo Y, Shi CL, Kristiansen W, Holmgren A, Clark SE, Aalen RB, Butenko MA.

Plant Cell. 2008 Jul;20(7):1805-17. doi: 10.1105/tpc.108.059139. Epub 2008 Jul 25.


The BLADE-ON-PETIOLE genes are essential for abscission zone formation in Arabidopsis.

McKim SM, Stenvik GE, Butenko MA, Kristiansen W, Cho SK, Hepworth SR, Aalen RB, Haughn GW.

Development. 2008 Apr;135(8):1537-46. doi: 10.1242/dev.012807. Epub 2008 Mar 13.


The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS).

Thorstensen T, Grini PE, Mercy IS, Alm V, Erdal S, Aasland R, Aalen RB.

Plant Mol Biol. 2008 Jan;66(1-2):47-59. Epub 2007 Nov 3.


Drosophila dSet2 functions in H3-K36 methylation and is required for development.

Stabell M, Larsson J, Aalen RB, Lambertsson A.

Biochem Biophys Res Commun. 2007 Aug 3;359(3):784-9. Epub 2007 Jun 4.


The Drosophila SET domain encoding gene dEset is essential for proper development.

Stabell M, Bjørkmo M, Aalen RB, Lambertsson A.

Hereditas. 2006 Dec;143(2006):177-88.


The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9.

Thorstensen T, Fischer A, Sandvik SV, Johnsen SS, Grini PE, Reuter G, Aalen RB.

Nucleic Acids Res. 2006;34(19):5461-70. Epub 2006 Oct 4.


Ethylene-dependent and -independent pathways controlling floral abscission are revealed to converge using promoter::reporter gene constructs in the ida abscission mutant.

Butenko MA, Stenvik GE, Alm V, Saether B, Patterson SE, Aalen RB.

J Exp Bot. 2006;57(14):3627-37. Epub 2006 Sep 21.


The Drosophila G9a gene encodes a multi-catalytic histone methyltransferase required for normal development.

Stabell M, Eskeland R, Bjørkmo M, Larsson J, Aalen RB, Imhof A, Lambertsson A.

Nucleic Acids Res. 2006;34(16):4609-21. Epub 2006 Sep 8.


An inverted repeat transgene with a structure that cannot generate double-stranded RNA, suffers silencing independent of DNA methylation.

Skårn M, Eike MC, Meza TJ, Mercy IS, Jakobsen KS, Aalen RB.

Transgenic Res. 2006 Aug;15(4):489-500.


Overexpression of INFLORESCENCE DEFICIENT IN ABSCISSION activates cell separation in vestigial abscission zones in Arabidopsis.

Stenvik GE, Butenko MA, Urbanowicz BR, Rose JK, Aalen RB.

Plant Cell. 2006 Jun;18(6):1467-76. Epub 2006 May 5.


ABI3 mediates expression of the peroxiredoxin antioxidant AtPER1 gene and induction by oxidative stress.

Haslekås C, Grini PE, Nordgard SH, Thorstensen T, Viken MK, Nygaard V, Aalen RB.

Plant Mol Biol. 2003 Oct;53(3):313-26.


Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress.

Haslekås C, Viken MK, Grini PE, Nygaard V, Nordgard SH, Meza TJ, Aalen RB.

Plant Physiol. 2003 Nov;133(3):1148-57. Epub 2003 Oct 2.


Inflorescence deficient in abscission controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants.

Butenko MA, Patterson SE, Grini PE, Stenvik GE, Amundsen SS, Mandal A, Aalen RB.

Plant Cell. 2003 Oct;15(10):2296-307. Epub 2003 Sep 5.


Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing.

Meza TJ, Stangeland B, Mercy IS, Skårn M, Nymoen DA, Berg A, Butenko MA, Håkelien AM, Haslekås C, Meza-Zepeda LA, Aalen RB.

Nucleic Acids Res. 2002 Oct 15;30(20):4556-66.


A human CpG island randomly inserted into a plant genome is protected from methylation.

Meza TJ, Enerly E, Børu B, Larsen F, Mandal A, Aalen RB, Jakobsen KS.

Transgenic Res. 2002 Apr;11(2):133-42.


The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.

Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB.

Nucleic Acids Res. 2001 Nov 1;29(21):4319-33.


The frequency of silencing in Arabidopsis thaliana varies highly between progeny of siblings and can be influenced by environmental factors.

Meza TJ, Kamfjord D, Håkelien AM, Evans I, Godager LH, Mandal A, Jakobsen KS, Aalen RB.

Transgenic Res. 2001;10(1):53-67.


The expression of a peroxiredoxin antioxidant gene, AtPer1, in Arabidopsis thaliana is seed-specific and related to dormancy.

Haslekås C, Stacy RA, Nygaard V, Culiáñez-Macià FA, Aalen RB.

Plant Mol Biol. 1998 Apr;36(6):833-45.


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