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Best matches for Šulc P[au]:

On the biophysics and kinetics of toehold-mediated DNA strand displacement. Srinivas N et al. Nucleic Acids Res. (2013)

Rapid Photoactuation of a DNA Nanostructure using an Internal Photocaged Trigger Strand. Liu M et al. Angew Chem Int Ed Engl. (2018)

Modelling toehold-mediated RNA strand displacement. Šulc P et al. Biophys J. (2015)

Search results

Items: 21

1.

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami.

Suma A, Poppleton E, Matthies M, Šulc P, Romano F, Louis AA, Doye JPK, Micheletti C, Rovigatti L.

J Comput Chem. 2019 Nov 5;40(29):2586-2595. doi: 10.1002/jcc.26029. Epub 2019 Jul 13.

PMID:
31301183
2.

An emergent understanding of strand displacement in RNA biology.

Hong F, Šulc P.

J Struct Biol. 2019 Sep 1;207(3):241-249. doi: 10.1016/j.jsb.2019.06.005. Epub 2019 Jun 18.

PMID:
31220588
3.

Triangulated Wireframe Structures Assembled Using Single-Stranded DNA Tiles.

Matthies M, Agarwal NP, Poppleton E, Joshi FM, Šulc P, Schmidt TL.

ACS Nano. 2019 Feb 26;13(2):1839-1848. doi: 10.1021/acsnano.8b08009. Epub 2019 Jan 15.

PMID:
30624898
4.

Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering.

Hong F, Jiang S, Lan X, Narayanan RP, Šulc P, Zhang F, Liu Y, Yan H.

J Am Chem Soc. 2018 Nov 7;140(44):14670-14676. doi: 10.1021/jacs.8b07180. Epub 2018 Oct 29.

PMID:
30336007
5.

Rapid Photoactuation of a DNA Nanostructure using an Internal Photocaged Trigger Strand.

Liu M, Jiang S, Loza O, Fahmi NE, Šulc P, Stephanopoulos N.

Angew Chem Int Ed Engl. 2018 Jul 20;57(30):9341-9345. doi: 10.1002/anie.201804264. Epub 2018 Jun 22.

PMID:
29790232
6.

Self-assembling DNA nanotubes to connect molecular landmarks.

Mohammed AM, Šulc P, Zenk J, Schulman R.

Nat Nanotechnol. 2017 May;12(4):312-316. doi: 10.1038/nnano.2016.277. Epub 2016 Dec 19.

PMID:
27992412
7.

Coarse-grained modelling of supercoiled RNA.

Matek C, Šulc P, Randisi F, Doye JP, Louis AA.

J Chem Phys. 2015 Dec 28;143(24):243122. doi: 10.1063/1.4933066.

PMID:
26723607
8.

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

Snodin BE, Randisi F, Mosayebi M, Šulc P, Schreck JS, Romano F, Ouldridge TE, Tsukanov R, Nir E, Louis AA, Doye JP.

J Chem Phys. 2015 Jun 21;142(23):234901. doi: 10.1063/1.4921957.

9.

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.

Schreck JS, Ouldridge TE, Romano F, Šulc P, Shaw LP, Louis AA, Doye JP.

Nucleic Acids Res. 2015 Jul 27;43(13):6181-90. doi: 10.1093/nar/gkv582. Epub 2015 Jun 8.

10.

Modelling toehold-mediated RNA strand displacement.

Šulc P, Ouldridge TE, Romano F, Doye JP, Louis AA.

Biophys J. 2015 Mar 10;108(5):1238-47. doi: 10.1016/j.bpj.2015.01.023.

11.

A comparison between parallelization approaches in molecular dynamics simulations on GPUs.

Rovigatti L, Sulc P, Reguly IZ, Romano F.

J Comput Chem. 2015 Jan 5;36(1):1-8. doi: 10.1002/jcc.23763. Epub 2014 Oct 30.

PMID:
25355527
12.

A nucleotide-level coarse-grained model of RNA.

Šulc P, Romano F, Ouldridge TE, Doye JP, Louis AA.

J Chem Phys. 2014 Jun 21;140(23):235102. doi: 10.1063/1.4881424.

13.

Coarse-graining DNA for simulations of DNA nanotechnology.

Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, Snodin BE, Rovigatti L, Schreck JS, Harrison RM, Smith WP.

Phys Chem Chem Phys. 2013 Dec 21;15(47):20395-414. doi: 10.1039/c3cp53545b. Epub 2013 Oct 11.

14.

On the biophysics and kinetics of toehold-mediated DNA strand displacement.

Srinivas N, Ouldridge TE, Sulc P, Schaeffer JM, Yurke B, Louis AA, Doye JP, Winfree E.

Nucleic Acids Res. 2013 Dec;41(22):10641-58. doi: 10.1093/nar/gkt801. Epub 2013 Sep 9.

15.

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.

Ouldridge TE, Sulc P, Romano F, Doye JP, Louis AA.

Nucleic Acids Res. 2013 Oct;41(19):8886-95. doi: 10.1093/nar/gkt687. Epub 2013 Aug 8.

16.

Sequence-dependent thermodynamics of a coarse-grained DNA model.

Šulc P, Romano F, Ouldridge TE, Rovigatti L, Doye JP, Louis AA.

J Chem Phys. 2012 Oct 7;137(13):135101. doi: 10.1063/1.4754132.

17.

Non-Gaussianity in single-particle tracking: use of kurtosis to learn the characteristics of a cage-type potential.

Lushnikov PM, Sulc P, Turitsyn KS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 May;85(5 Pt 1):051905. Epub 2012 May 14.

PMID:
23004786
18.

Quantifying slow evolutionary dynamics in RNA fitness landscapes.

Sulc P, Wagner A, Martin OC.

J Bioinform Comput Biol. 2010 Dec;8(6):1027-40.

19.

Return probabilities and hitting times of random walks on sparse Erdös-Rényi graphs.

Martin OC, Sulc P.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031111. Epub 2010 Mar 11.

PMID:
20365701
20.

Experimental rabbit model of meningitis produced by Haemophilus influenzae serotype c.

Sulc P, Hengstler B, Krinke G, O'Reilly T, Zak O.

J Med Microbiol. 1992 May;36(5):312-7.

PMID:
1588580
21.

Contribution to the problem of cyst-producing coccidians.

Cerná Z, Kolárová I, Sulc P.

Folia Parasitol (Praha). 1978;25(1):9-16.

PMID:
416999

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