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Items: 25

1.

The Core and Holoenzyme Forms of RNA Polymerase from Mycobacterium smegmatis.

Kouba T, Pospíšil J, Hnilicová J, Šanderová H, Barvík I, Krásný L.

J Bacteriol. 2019 Jan 28;201(4). pii: e00583-18. doi: 10.1128/JB.00583-18. Print 2019 Feb 15.

PMID:
30478083
2.

Ms1 RNA increases the amount of RNA polymerase in Mycobacterium smegmatis.

Šiková M, Janoušková M, Ramaniuk O, Páleníková P, Pospíšil J, Bartl P, Suder A, Pajer P, Kubičková P, Pavliš O, Hradilová M, Vítovská D, Šanderová H, Převorovský M, Hnilicová J, Krásný L.

Mol Microbiol. 2019 Feb;111(2):354-372. doi: 10.1111/mmi.14159. Epub 2018 Dec 11.

PMID:
30427073
3.

σI from Bacillus subtilis: Impact on Gene Expression and Characterization of σI-Dependent Transcription That Requires New Types of Promoters with Extended -35 and -10 Elements.

Ramaniuk O, Převorovský M, Pospíšil J, Vítovská D, Kofroňová O, Benada O, Schwarz M, Šanderová H, Hnilicová J, Krásný L.

J Bacteriol. 2018 Aug 10;200(17). pii: e00251-18. doi: 10.1128/JB.00251-18. Print 2018 Sep 1.

4.

Turning Off Transcription with Bacterial RNA Polymerase through CuAAC Click Reactions of DNA Containing 5-Ethynyluracil.

Slavíčková M, Janoušková M, Šimonová A, Cahová H, Kambová M, Šanderová H, Krásný L, Hocek M.

Chemistry. 2018 Jun 12;24(33):8311-8314. doi: 10.1002/chem.201801757. Epub 2018 May 17.

PMID:
29655191
5.

5-(Hydroxymethyl)uracil and -cytosine as potential epigenetic marks enhancing or inhibiting transcription with bacterial RNA polymerase.

Janoušková M, Vaníková Z, Nici F, Boháčová S, Vítovská D, Šanderová H, Hocek M, Krásný L.

Chem Commun (Camb). 2017 Dec 12;53(99):13253-13255. doi: 10.1039/c7cc08053k.

PMID:
29184924
6.

Lipophosphonoxins II: Design, Synthesis, and Properties of Novel Broad Spectrum Antibacterial Agents.

Seydlová G, Pohl R, Zborníková E, Ehn M, Šimák O, Panova N, Kolář M, Bogdanová K, Večeřová R, Fišer R, Šanderová H, Vítovská D, Sudzinová P, Pospíšil J, Benada O, Křížek T, Sedlák D, Bartůněk P, Krásný L, Rejman D.

J Med Chem. 2017 Jul 27;60(14):6098-6118. doi: 10.1021/acs.jmedchem.7b00355. Epub 2017 Jul 12.

PMID:
28654257
7.

Solution structure of domain 1.1 of the σA factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.

Zachrdla M, Padrta P, Rabatinová A, Šanderová H, Barvík I, Krásný L, Žídek L.

J Biol Chem. 2017 Jul 14;292(28):11610-11617. doi: 10.1074/jbc.M117.784074. Epub 2017 May 24.

8.

Non-canonical transcription initiation: the expanding universe of transcription initiating substrates.

Barvík I, Rejman D, Panova N, Šanderová H, Krásný L.

FEMS Microbiol Rev. 2017 Mar 1;41(2):131-138. doi: 10.1093/femsre/fuw041. Review.

PMID:
27799279
9.

Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases.

Raindlová V, Janoušková M, Slavíčková M, Perlíková P, Boháčová S, Milisavljevič N, Šanderová H, Benda M, Barvík I, Krásný L, Hocek M.

Nucleic Acids Res. 2016 Apr 20;44(7):3000-12. doi: 10.1093/nar/gkw171. Epub 2016 Mar 21.

10.

Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins.

Panova N, Zborníková E, Šimák O, Pohl R, Kolář M, Bogdanová K, Večeřová R, Seydlová G, Fišer R, Hadravová R, Šanderová H, Vítovská D, Šiková M, Látal T, Lovecká P, Barvík I, Krásný L, Rejman D.

PLoS One. 2015 Dec 30;10(12):e0145918. doi: 10.1371/journal.pone.0145918. eCollection 2015.

11.

Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis.

Wiedermannová J, Sudzinová P, Kovaľ T, Rabatinová A, Šanderova H, Ramaniuk O, Rittich Š, Dohnálek J, Fu Z, Halada P, Lewis P, Krásny L.

Nucleic Acids Res. 2014 Apr;42(8):5151-63. doi: 10.1093/nar/gku113. Epub 2014 Feb 11.

12.

The δ subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell.

Rabatinová A, Šanderová H, Jirát Matějčková J, Korelusová J, Sojka L, Barvík I, Papoušková V, Sklenár V, Žídek L, Krásný L.

J Bacteriol. 2013 Jun;195(11):2603-11. doi: 10.1128/JB.00188-13. Epub 2013 Mar 29.

13.

Construction of in vitro transcription system for Corynebacterium glutamicum and its use in the recognition of promoters of different classes.

Holátko J, Silar R, Rabatinová A, Sanderová H, Halada P, Nešvera J, Krásný L, Pátek M.

Appl Microbiol Biotechnol. 2012 Oct;96(2):521-9. doi: 10.1007/s00253-012-4336-1. Epub 2012 Aug 11.

PMID:
22885668
14.

High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins.

Zawadzka-Kazimierczuk A, Koźmiński W, Sanderová H, Krásný L.

J Biomol NMR. 2012 Apr;52(4):329-37. doi: 10.1007/s10858-012-9613-x. Epub 2012 Feb 17.

15.

Lipophosphonoxins: new modular molecular structures with significant antibacterial properties.

Rejman D, Rabatinová A, Pombinho AR, Kovačková S, Pohl R, Zborníková E, Kolář M, Bogdanová K, Nyč O, Sanderová H, Látal T, Bartůněk P, Krásný L.

J Med Chem. 2011 Nov 24;54(22):7884-98. doi: 10.1021/jm2009343. Epub 2011 Nov 1.

PMID:
22007704
16.

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Nováček J, Zawadzka-Kazimierczuk A, Papoušková V, Zídek L, Sanderová H, Krásný L, Koźmiński W, Sklenář V.

J Biomol NMR. 2011 May;50(1):1-11. doi: 10.1007/s10858-011-9496-2. Epub 2011 Mar 20.

PMID:
21424579
17.

Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis.

Sojka L, Kouba T, Barvík I, Sanderová H, Maderová Z, Jonák J, Krásny L.

Nucleic Acids Res. 2011 Jun;39(11):4598-611. doi: 10.1093/nar/gkr032. Epub 2011 Feb 7.

18.

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Motáčková V, Nováček J, Zawadzka-Kazimierczuk A, Kazimierczuk K, Zídek L, Sanderová H, Krásný L, Koźmiński W, Sklenář V.

J Biomol NMR. 2010 Nov;48(3):169-77. doi: 10.1007/s10858-010-9447-3. Epub 2010 Oct 2.

19.

Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs.

Motácková V, Sanderová H, Zídek L, Novácek J, Padrta P, Svenková A, Korelusová J, Jonák J, Krásný L, Sklenár V.

Proteins. 2010 May 15;78(7):1807-10. doi: 10.1002/prot.22708. No abstract available.

PMID:
20310067
20.

The N-terminal region is crucial for the thermostability of the G-domain of Bacillus stearothermophilus EF-Tu.

Sanderová H, Tiserová H, Barvík I, Sojka L, Jonák J, Krásný L.

Biochim Biophys Acta. 2010 Jan;1804(1):147-55. doi: 10.1016/j.bbapap.2009.09.024. Epub 2009 Sep 30.

PMID:
19800034
21.

Pyrrolidine analogues of nucleosides and nucleotides.

Rejman D, Pohl R, Kovacková S, Kocalka P, Svenková A, Sanderová H, Krásný L, Rosenberg I.

Nucleic Acids Symp Ser (Oxf). 2008;(52):577-8. doi: 10.1093/nass/nrn292.

PMID:
18776511
22.

The surface-associated elongation factor Tu is concealed for antibody binding on viable pneumococci and meningococci.

Kolberg J, Hammerschmidt S, Frank R, Jonák J, Sanderová H, Aase A.

FEMS Immunol Med Microbiol. 2008 Jul;53(2):222-30. doi: 10.1111/j.1574-695X.2008.00419.x. Epub 2008 May 5.

23.

The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis.

Krásný L, Tiserová H, Jonák J, Rejman D, Sanderová H.

Mol Microbiol. 2008 Jul;69(1):42-54. doi: 10.1111/j.1365-2958.2008.06256.x. Epub 2008 Apr 21.

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