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Items: 31


Gut Anaerobes Capable of Chicken Caecum Colonisation.

Kubasova T, Kollarcikova M, Crhanova M, Karasova D, Cejkova D, Sebkova A, Matiasovicova J, Faldynova M, Sisak F, Babak V, Pokorna A, Cizek A, Rychlik I.

Microorganisms. 2019 Nov 21;7(12). pii: E597. doi: 10.3390/microorganisms7120597.


Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions.

Snopková K, Čejková D, Dufková K, Sedláček I, Šmajs D.

Arch Microbiol. 2019 Nov 6. doi: 10.1007/s00203-019-01755-4. [Epub ahead of print]


Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens.

Grillová L, Oppelt J, Mikalová L, Nováková M, Giacani L, Niesnerová A, Noda AA, Mechaly AE, Pospíšilová P, Čejková D, Grange PA, Dupin N, Strnadel R, Chen M, Denham I, Arora N, Picardeau M, Weston C, Forsyth RA, Šmajs D.

Front Microbiol. 2019 Jul 31;10:1691. doi: 10.3389/fmicb.2019.01691. eCollection 2019.


Contact with adult hen affects development of caecal microbiota in newly hatched chicks.

Kubasova T, Kollarcikova M, Crhanova M, Karasova D, Cejkova D, Sebkova A, Matiasovicova J, Faldynova M, Pokorna A, Cizek A, Rychlik I.

PLoS One. 2019 Mar 6;14(3):e0212446. doi: 10.1371/journal.pone.0212446. eCollection 2019.


Use of 16S rRNA gene sequencing for prediction of new opportunistic pathogens in chicken ileal and cecal microbiota.

Kollarcikova M, Kubasova T, Karasova D, Crhanova M, Cejkova D, Sisak F, Rychlik I.

Poult Sci. 2019 Jun 1;98(6):2347-2353. doi: 10.3382/ps/pey594.


Complete genome sequences of two strains of Treponema pallidum subsp. pertenue from Indonesia: Modular structure of several treponemal genes.

Strouhal M, Mikalová L, Haviernik J, Knauf S, Bruisten S, Noordhoek GT, Oppelt J, Čejková D, Šmajs D.

PLoS Negl Trop Dis. 2018 Oct 10;12(10):e0006867. doi: 10.1371/journal.pntd.0006867. eCollection 2018 Oct.


Sequencing of Treponema pallidum subsp. pallidum from isolate UZ1974 using Anti-Treponemal Antibodies Enrichment: First complete whole genome sequence obtained directly from human clinical material.

Grillová L, Giacani L, Mikalová L, Strouhal M, Strnadel R, Marra C, Centurion-Lara A, Poveda L, Russo G, Čejková D, Vašků V, Oppelt J, Šmajs D.

PLoS One. 2018 Aug 21;13(8):e0202619. doi: 10.1371/journal.pone.0202619. eCollection 2018.


Effects of host genetics and environmental conditions on fecal microbiota composition of pigs.

Kubasova T, Davidova-Gerzova L, Babak V, Cejkova D, Montagne L, Le-Floc'h N, Rychlik I.

PLoS One. 2018 Aug 7;13(8):e0201901. doi: 10.1371/journal.pone.0201901. eCollection 2018.


Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures.

Medvecky M, Cejkova D, Polansky O, Karasova D, Kubasova T, Cizek A, Rychlik I.

BMC Genomics. 2018 Jul 31;19(1):561. doi: 10.1186/s12864-018-4959-4.


Characterization of blaKPC-3-positive plasmids from an Enterobacter aerogenes isolated from a corvid in Canada.

Kutilova I, Janecko N, Cejkova D, Literak I, Papagiannitsis CC, Dolejska M.

J Antimicrob Chemother. 2018 Sep 1;73(9):2573-2575. doi: 10.1093/jac/dky199. No abstract available.


Complete genome sequences of two strains of Treponema pallidum subsp. pertenue from Ghana, Africa: Identical genome sequences in samples isolated more than 7 years apart.

Strouhal M, Mikalová L, Havlíčková P, Tenti P, Čejková D, Rychlík I, Bruisten S, Šmajs D.

PLoS Negl Trop Dis. 2017 Sep 8;11(9):e0005894. doi: 10.1371/journal.pntd.0005894. eCollection 2017 Sep.


Two highly divergent lineages of exfoliative toxin B-encoding plasmids revealed in impetigo strains of Staphylococcus aureus.

Botka T, Růžičková V, Svobodová K, Pantůček R, Petráš P, Čejková D, Doškař J.

Int J Med Microbiol. 2017 Sep;307(6):291-296. doi: 10.1016/j.ijmm.2017.05.005. Epub 2017 May 29.


Complete Genome Sequence of Bacteriophage SEN8, a Temperate Phage Isolated from Salmonella enterica subsp. salamae.

Bosák J, Mikalová L, Čejková D, Šmarda J, Šmajs D.

Genome Announc. 2017 May 11;5(19). pii: e00239-17. doi: 10.1128/genomeA.00239-17.


Antibiotic Resistance, Core-Genome and Protein Expression in IncHI1 Plasmids in Salmonella Typhimurium.

Kubasova T, Cejkova D, Matiasovicova J, Sekelova Z, Polansky O, Medvecky M, Rychlik I, Juricova H.

Genome Biol Evol. 2016 Jun 13;8(6):1661-71. doi: 10.1093/gbe/evw105.


Microcin determinants are associated with B2 phylogroup of human fecal Escherichia coli isolates.

Micenková L, Bosák J, Štaudová B, Kohoutová D, Čejková D, Woznicová V, Vrba M, Ševčíková A, Bureš J, Šmajs D.

Microbiologyopen. 2016 Jun;5(3):490-8. doi: 10.1002/mbo3.345. Epub 2016 Mar 14.


A Retrospective Study on Genetic Heterogeneity within Treponema Strains: Subpopulations Are Genetically Distinct in a Limited Number of Positions.

Čejková D, Strouhal M, Norris SJ, Weinstock GM, Šmajs D.

PLoS Negl Trop Dis. 2015 Oct 5;9(10):e0004110. doi: 10.1371/journal.pntd.0004110. eCollection 2015.


Characterization of Antibiotic Resistance Gene Abundance and Microbiota Composition in Feces of Organic and Conventional Pigs from Four EU Countries.

Gerzova L, Babak V, Sedlar K, Faldynova M, Videnska P, Cejkova D, Jensen AN, Denis M, Kerouanton A, Ricci A, Cibin V, Österberg J, Rychlik I.

PLoS One. 2015 Jul 28;10(7):e0132892. doi: 10.1371/journal.pone.0132892. eCollection 2015.


Curcuma and Scutellaria plant extracts protect chickens against inflammation and Salmonella Enteritidis infection.

Varmuzova K, Matulova ME, Gerzova L, Cejkova D, Gardan-Salmon D, Panhéleux M, Robert F, Sisak F, Havlickova H, Rychlik I.

Poult Sci. 2015 Sep;94(9):2049-58. doi: 10.3382/ps/pev190. Epub 2015 Jul 17.


Succession and replacement of bacterial populations in the caecum of egg laying hens over their whole life.

Videnska P, Sedlar K, Lukac M, Faldynova M, Gerzova L, Cejkova D, Sisak F, Rychlik I.

PLoS One. 2014 Dec 12;9(12):e115142. doi: 10.1371/journal.pone.0115142. eCollection 2014.


Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.

Staudová B, Strouhal M, Zobaníková M, Cejková D, Fulton LL, Chen L, Giacani L, Centurion-Lara A, Bruisten SM, Sodergren E, Weinstock GM, Smajs D.

PLoS Negl Trop Dis. 2014 Nov 6;8(11):e3261. doi: 10.1371/journal.pntd.0003261. eCollection 2014.


Characterization of egg laying hen and broiler fecal microbiota in poultry farms in Croatia, Czech Republic, Hungary and Slovenia.

Videnska P, Rahman MM, Faldynova M, Babak V, Matulova ME, Prukner-Radovcic E, Krizek I, Smole-Mozina S, Kovac J, Szmolka A, Nagy B, Sedlar K, Cejkova D, Rychlik I.

PLoS One. 2014 Oct 16;9(10):e110076. doi: 10.1371/journal.pone.0110076. eCollection 2014.


Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters.

Pětrošová H, Pospíšilová P, Strouhal M, Čejková D, Zobaníková M, Mikalová L, Sodergren E, Weinstock GM, Šmajs D.

PLoS One. 2013 Sep 10;8(9):e74319. doi: 10.1371/journal.pone.0074319. eCollection 2013.


Human Escherichia coli strains of different geographical and time source: bacteriocin types and their gene sequences are population-specific.

Smajs D, Cejková D, Micenková L, Lima-Bittencourt CI, Chartone-Souza E, Smarda J, Nascimento AM.

Environ Microbiol Rep. 2012 Aug;4(4):459-66. doi: 10.1111/j.1758-2229.2012.00365.x. Epub 2012 Jul 3.


Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies.

Zobaníková M, Strouhal M, Mikalová L, Cejková D, Ambrožová L, Pospíšilová P, Fulton LL, Chen L, Sodergren E, Weinstock GM, Smajs D.

PLoS Negl Trop Dis. 2013 Apr 18;7(4):e2172. doi: 10.1371/journal.pntd.0002172. Print 2013.


Complete genome sequence of Treponema pallidum strain DAL-1.

Zobaníková M, Mikolka P, Cejková D, Pospíšilová P, Chen L, Strouhal M, Qin X, Weinstock GM, Smajs D.

Stand Genomic Sci. 2012 Oct 10;7(1):12-21. doi: 10.4056/sigs.2615838. Epub 2012 Sep 24.


Structure of rrn operons in pathogenic non-cultivable treponemes: sequence but not genomic position of intergenic spacers correlates with classification of Treponema pallidum and Treponema paraluiscuniculi strains.

Cejková D, Zobaníková M, Pospísilová P, Strouhal M, Mikalová L, Weinstock GM, Smajs D.

J Med Microbiol. 2013 Feb;62(Pt 2):196-207. doi: 10.1099/jmm.0.050658-0. Epub 2012 Oct 18.


Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains.

Pětrošová H, Zobaníková M, Čejková D, Mikalová L, Pospíšilová P, Strouhal M, Chen L, Qin X, Muzny DM, Weinstock GM, Šmajs D.

PLoS Negl Trop Dis. 2012;6(9):e1832. doi: 10.1371/journal.pntd.0001832. Epub 2012 Sep 20.


Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence.

Cejková D, Zobaníková M, Chen L, Pospíšilová P, Strouhal M, Qin X, Mikalová L, Norris SJ, Muzny DM, Gibbs RA, Fulton LL, Sodergren E, Weinstock GM, Smajs D.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1471. doi: 10.1371/journal.pntd.0001471. Epub 2012 Jan 24.


Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay.

Šmajs D, Zobaníková M, Strouhal M, Čejková D, Dugan-Rocha S, Pospíšilová P, Norris SJ, Albert T, Qin X, Hallsworth-Pepin K, Buhay C, Muzny DM, Chen L, Gibbs RA, Weinstock GM.

PLoS One. 2011;6(5):e20415. doi: 10.1371/journal.pone.0020415. Epub 2011 May 31.


Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions.

Mikalová L, Strouhal M, Čejková D, Zobaníková M, Pospíšilová P, Norris SJ, Sodergren E, Weinstock GM, Šmajs D.

PLoS One. 2010 Dec 29;5(12):e15713. doi: 10.1371/journal.pone.0015713.


Complete sequence of low-copy-number plasmid MccC7-H22 of probiotic Escherichia coli H22 and the prevalence of mcc genes among human E. coli.

Smajs D, Strouhal M, Matejková P, Cejková D, Cursino L, Chartone-Souza E, Smarda J, Nascimento AM.

Plasmid. 2008 Jan;59(1):1-10. Epub 2007 Oct 22.


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