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The Impact of Nonsteroidal Anti-Inflammatory Drugs, Beta Blockers, and Metformin on the Efficacy of Anti-PD-1 Therapy in Advanced Melanoma.

Wang DY, McQuade JL, Rai RR, Park JJ, Zhao S, Ye F, Beckermann KE, Rubinstein SM, Johnpulle R, Long GV, Carlino MS, Menzies AM, Davies MA, Johnson DB.

Oncologist. 2019 Nov 29. pii: theoncologist.2019-0518. doi: 10.1634/theoncologist.2019-0518. [Epub ahead of print]


Graft dural closure is associated with a reduction in CSF leak and hydrocephalus in pediatric patients undergoing posterior fossa brain tumor resection.

Hale AT, Gannon SR, Zhao S, Dewan MC, Bhatia R, Bezzerides M, Stanton AN, Naftel RP, Shannon CN, Pruthi S, Wellons JC.

J Neurosurg Pediatr. 2019 Nov 29:1-7. doi: 10.3171/2019.9.PEDS1939. [Epub ahead of print]


Cerebrospinal fluid alterations following endoscopic third ventriculostomy with choroid plexus cauterization: a retrospective laboratory analysis of two tertiary care centers.

Dewan MC, Dallas J, Zhao S, Smith BP, Gannon S, Dawoud F, Chen H, Shannon CN, Rocque BG, Naftel RP.

Childs Nerv Syst. 2019 Nov 28. doi: 10.1007/s00381-019-04415-6. [Epub ahead of print]


Genomic Underpinnings of Tumor Behavior in in situ and Early Lung Adenocarcinoma.

Qian J, Zhao S, Zou Y, Rahman SMJ, Senosain MF, Stricker T, Chen H, Powell CA, Borczuk AC, Massion PP.

Am J Respir Crit Care Med. 2019 Nov 20. doi: 10.1164/rccm.201902-0294OC. [Epub ahead of print]


Changes in Provider Perceptions Regarding Early Mobility in the PICU.

Hanna ES, Zhao S, Shannon CN, Betters KA.

Pediatr Crit Care Med. 2019 Nov 4. doi: 10.1097/PCC.0000000000002177. [Epub ahead of print]


Therapeutic laparoscopy for pediatric abdominal trauma.

Evans PT, Phelps HM, Zhao S, Van Arendonk KJ, Greeno AL, Collins KF, Lovvorn HN 3rd.

J Pediatr Surg. 2019 Jul 15. pii: S0022-3468(19)30454-3. doi: 10.1016/j.jpedsurg.2019.07.001. [Epub ahead of print]


High dietary salt-induced dendritic cell activation underlies microbial dysbiosis-associated hypertension.

Ferguson JF, Aden LA, Barbaro NR, Van Beusecum JP, Xiao L, Simmons AJ, Warden C, Pasic L, Himmel LE, Washington MK, Revetta FL, Zhao S, Kumaresan S, Scholz MB, Tang Z, Chen G, Reilly MP, Kirabo A.

JCI Insight. 2019 Jun 4;5. pii: 126241. doi: 10.1172/jci.insight.126241.


Critical role of Interleukin 21 and T follicular helper cells in hypertension and vascular dysfunction.

Dale BL, Pandey AK, Chen Y, Smart CD, Laroumanie F, Ao M, Xiao L, Dikalova AE, Dikalov SI, Elijovich F, Foss JD, Barbaro NR, Van Beusecum JP, Deger SM, Alsouqi A, Itani HA, Norlander AE, Alexander MR, Zhao S, Ikizler TA, Algood HMS, Madhur MS.

JCI Insight. 2019 Apr 23;5. pii: 129278. doi: 10.1172/jci.insight.129278.


Predictors of endoscopic third ventriculostomy ostomy status in patients who experience failure of endoscopic third ventriculostomy with choroid plexus cauterization.

Hale AT, Stanton AN, Zhao S, Haji F, Gannon SR, Arynchyna A, Wellons JC, Rocque BG, Naftel RP.

J Neurosurg Pediatr. 2019 Apr 19:1-6. doi: 10.3171/2019.2.PEDS18743. [Epub ahead of print]


Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan.

Chen DQ, Cao G, Chen H, Argyopoulos CP, Yu H, Su W, Chen L, Samuels DC, Zhuang S, Bayliss GP, Zhao S, Yu XY, Vaziri ND, Wang M, Liu D, Mao JR, Ma SX, Zhao J, Zhang Y, Shang YQ, Kang H, Ye F, Cheng XH, Li XR, Zhang L, Meng MX, Guo Y, Zhao YY.

Nat Commun. 2019 Apr 1;10(1):1476. doi: 10.1038/s41467-019-09329-0.


Clinical Correlates of Response to Anti-PD-1-based Therapy in Patients With Metastatic Melanoma.

Davis EJ, Perez MC, Ayoubi N, Zhao S, Ye F, Wang DY, Sosman JA, Al-Rohil RN, Eroglu Z, Johnson DB.

J Immunother. 2019 Jul/Aug;42(6):221-227. doi: 10.1097/CJI.0000000000000258.


Beta cell secretion of miR-375 to HDL is inversely associated with insulin secretion.

Sedgeman LR, Beysen C, Ramirez Solano MA, Michell DL, Sheng Q, Zhao S, Turner S, Linton MF, Vickers KC.

Sci Rep. 2019 Mar 7;9(1):3803. doi: 10.1038/s41598-019-40338-7.


Insight into the Etiology of Undifferentiated Soft Tissue Sarcomas from a Novel Mouse Model.

Fleming JT, Brignola E, Chen L, Guo Y, Zhao S, Wang Q, Li B, Correa H, Ermilov AN, Dlugosz AA, Chiang C.

Mol Cancer Res. 2019 May;17(5):1024-1035. doi: 10.1158/1541-7786.MCR-18-0117. Epub 2019 Jan 25.


LNK deficiency promotes acute aortic dissection and rupture.

Laroumanie F, Korneva A, Bersi MR, Alexander MR, Xiao L, Zhong X, Van Beusecum JP, Chen Y, Saleh MA, McMaster WG, Gavulic KA, Dale BL, Zhao S, Guo Y, Shyr Y, Perrien DS, Cox NJ, Curci JA, Humphrey JD, Madhur MS.

JCI Insight. 2018 Oct 18;3(20). pii: 122558. doi: 10.1172/jci.insight.122558.


Fatal Toxic Effects Associated With Immune Checkpoint Inhibitors: A Systematic Review and Meta-analysis.

Wang DY, Salem JE, Cohen JV, Chandra S, Menzer C, Ye F, Zhao S, Das S, Beckermann KE, Ha L, Rathmell WK, Ancell KK, Balko JM, Bowman C, Davis EJ, Chism DD, Horn L, Long GV, Carlino MS, Lebrun-Vignes B, Eroglu Z, Hassel JC, Menzies AM, Sosman JA, Sullivan RJ, Moslehi JJ, Johnson DB.

JAMA Oncol. 2018 Dec 1;4(12):1721-1728. doi: 10.1001/jamaoncol.2018.3923. Erratum in: JAMA Oncol. 2018 Dec 1;4(12):1792.


Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins.

Allen RM, Zhao S, Ramirez Solano MA, Zhu W, Michell DL, Wang Y, Shyr Y, Sethupathy P, Linton MF, Graf GA, Sheng Q, Vickers KC.

J Extracell Vesicles. 2018 Aug 13;7(1):1506198. doi: 10.1080/20013078.2018.1506198. eCollection 2018.


Enhanced fluoride adsorption of aluminum humate and its resistance on fluoride accumulation in tea leaves.

Huang C, Zhang H, Zeng W, Ma J, Zhao S, Jiang Y, Huang C, Mao H, Liao Y.

Environ Technol. 2018 Jul 27:1-10. doi: 10.1080/09593330.2018.1498135. [Epub ahead of print]


RnaSeqSampleSize: real data based sample size estimation for RNA sequencing.

Zhao S, Li CI, Guo Y, Sheng Q, Shyr Y.

BMC Bioinformatics. 2018 May 30;19(1):191. doi: 10.1186/s12859-018-2191-5.


The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer.

Guo Y, Yu H, Wang J, Sheng Q, Zhao S, Zhao YY, Lehmann BD.

Genes (Basel). 2018 Jan 10;9(1). pii: E29. doi: 10.3390/genes9010029.


Current Research on Non-Coding Ribonucleic Acid (RNA).

Wang J, Samuels DC, Zhao S, Xiang Y, Zhao YY, Guo Y.

Genes (Basel). 2017 Dec 5;8(12). pii: E366. doi: 10.3390/genes8120366. Review.


Incidence of immune checkpoint inhibitor-related colitis in solid tumor patients: A systematic review and meta-analysis.

Wang DY, Ye F, Zhao S, Johnson DB.

Oncoimmunology. 2017 Jul 5;6(10):e1344805. doi: 10.1080/2162402X.2017.1344805. eCollection 2017.


The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data.

Guo Y, Zhao S, Sheng Q, Samuels DC, Shyr Y.

BMC Genomics. 2017 Oct 3;18(Suppl 6):690. doi: 10.1186/s12864-017-4022-x.


Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome.

Zhao S, Samuels DC, Zhao YY, Guo Y.

Genomics. 2017 Sep 29. pii: S0888-7543(17)30093-9. doi: 10.1016/j.ygeno.2017.09.013. [Epub ahead of print]


Adsorption of RE3+ from aqueous solutions by bayberry tannin immobilized on chitosan.

Qiu X, Shen Y, Yang R, Zhang H, Zhao S.

Environ Technol. 2019 Jan;40(2):202-209. doi: 10.1080/09593330.2017.1384072. Epub 2017 Oct 6.


Study on emission of hazardous trace elements in a 350 MW coal-fired power plant. Part 1. Mercury.

Zhao S, Duan Y, Chen L, Li Y, Yao T, Liu S, Liu M, Lu J.

Environ Pollut. 2017 Oct;229:863-870. doi: 10.1016/j.envpol.2017.07.043. Epub 2017 Aug 2.


Estimating relative mitochondrial DNA copy number using high throughput sequencing data.

Zhang P, Lehmann BD, Samuels DC, Zhao S, Zhao YY, Shyr Y, Guo Y.

Genomics. 2017 Oct;109(5-6):457-462. doi: 10.1016/j.ygeno.2017.07.002. Epub 2017 Jul 19.


Hybridization of Metal Nanoparticles with Metal-Organic Frameworks Using Protein as Amphiphilic Stabilizer.

Mao H, Zhang W, Zhou W, Zou B, Zheng B, Zhao S, Huo F.

ACS Appl Mater Interfaces. 2017 Jul 26;9(29):24649-24654. doi: 10.1021/acsami.7b06754. Epub 2017 Jul 17.


Association of pyrethroids exposure with onset of puberty in Chinese girls.

Ye X, Pan W, Zhao Y, Zhao S, Zhu Y, Liu W, Liu J.

Environ Pollut. 2017 Aug;227:606-612. doi: 10.1016/j.envpol.2017.04.035. Epub 2017 May 11.


Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants.

Karnes JH, Bastarache L, Shaffer CM, Gaudieri S, Xu Y, Glazer AM, Mosley JD, Zhao S, Raychaudhuri S, Mallal S, Ye Z, Mayer JG, Brilliant MH, Hebbring SJ, Roden DM, Phillips EJ, Denny JC.

Sci Transl Med. 2017 May 10;9(389). pii: eaai8708. doi: 10.1126/scitranslmed.aai8708.


Relationships of Pyrethroid Exposure with Gonadotropin Levels and Pubertal Development in Chinese Boys.

Ye X, Pan W, Zhao S, Zhao Y, Zhu Y, Liu J, Liu W.

Environ Sci Technol. 2017 Jun 6;51(11):6379-6386. doi: 10.1021/acs.est.6b05984. Epub 2017 May 16.


Study on emission of hazardous trace elements in a 350 MW coal-fired power plant. Part 2. arsenic, chromium, barium, manganese, lead.

Zhao S, Duan Y, Chen L, Li Y, Yao T, Liu S, Liu M, Lu J.

Environ Pollut. 2017 Jul;226:404-411. doi: 10.1016/j.envpol.2017.04.009. Epub 2017 Apr 14.


Clinical Features of Acquired Resistance to Anti-PD-1 Therapy in Advanced Melanoma.

Wang DY, Eroglu Z, Ozgun A, Leger PD, Zhao S, Ye F, Luke JJ, Joseph RW, Haq R, Ott PA, Hodi FS, Sosman JA, Johnson DB, Buchbinder EI.

Cancer Immunol Res. 2017 May;5(5):357-362. doi: 10.1158/2326-6066.CIR-16-0287. Epub 2017 Apr 10.


Strategies for processing and quality control of Illumina genotyping arrays.

Zhao S, Jing W, Samuels DC, Sheng Q, Shyr Y, Guo Y.

Brief Bioinform. 2018 Sep 28;19(5):765-775. doi: 10.1093/bib/bbx012.


Three-dimensional culture system identifies a new mode of cetuximab resistance and disease-relevant genes in colorectal cancer.

Li C, Singh B, Graves-Deal R, Ma H, Starchenko A, Fry WH, Lu Y, Wang Y, Bogatcheva G, Khan MP, Milne GL, Zhao S, Ayers GD, Li N, Hu H, Washington MK, Yeatman TJ, McDonald OG, Liu Q, Coffey RJ.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2852-E2861. doi: 10.1073/pnas.1618297114. Epub 2017 Mar 20.


Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis.

Guo Y, Dai Y, Yu H, Zhao S, Samuels DC, Shyr Y.

Genomics. 2017 Mar;109(2):83-90. doi: 10.1016/j.ygeno.2017.01.005. Epub 2017 Jan 26.


Integrated molecular analysis reveals complex interactions between genomic and epigenomic alterations in esophageal adenocarcinomas.

Peng D, Guo Y, Chen H, Zhao S, Washington K, Hu T, Shyr Y, El-Rifai W.

Sci Rep. 2017 Jan 19;7:40729. doi: 10.1038/srep40729.


MicroRNAs and tRNA-derived fragments predict the transformation of myelodysplastic syndromes to acute myeloid leukemia.

Guo Y, Strickland SA, Mohan S, Li S, Bosompem A, Vickers KC, Zhao S, Sheng Q, Kim AS.

Leuk Lymphoma. 2017 Sep;58(9):1-15. doi: 10.1080/10428194.2016.1272680. Epub 2017 Jan 13.


Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing.

Guo Y, Vickers K, Xiong Y, Zhao S, Sheng Q, Zhang P, Zhou W, Flynn CR.

BMC Genomics. 2017 Jan 7;18(1):50. doi: 10.1186/s12864-016-3470-z.


Interrater Reliability in Pediatric Urodynamic Tracings: A Pilot Study.

Dudley AG, Casella DP, Lauderdale CJ, Zhao S, Chen H, Tanaka ST, Thomas JC, Pope JC 4th, Adams MC, Brock JW 3rd, Shannon CN, Clayton DB.

J Urol. 2017 Mar;197(3 Pt 2):865-870. doi: 10.1016/j.juro.2016.10.053. Epub 2016 Dec 7.


Isolation of High-density Lipoproteins for Non-coding Small RNA Quantification.

Michell DL, Allen RM, Landstreet SR, Zhao S, Toth CL, Sheng Q, Vickers KC.

J Vis Exp. 2016 Nov 28;(117). doi: 10.3791/54488.


Sequencing Treatment in BRAFV600 Mutant Melanoma: Anti-PD-1 Before and After BRAF Inhibition.

Johnson DB, Pectasides E, Feld E, Ye F, Zhao S, Johnpulle R, Merritt R, McDermott DF, Puzanov I, Lawrence D, Sosman JA, Buchbinder E, Sullivan RJ.

J Immunother. 2017 Jan;40(1):31-35.


RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining.

Guo Y, Wu J, Zhao S, Ye F, Su Y, Clark T, Sheng Q, Lehmann B, Shu XO, Cai Q.

Int J Genomics. 2016;2016:9837310. Epub 2016 Sep 28.


Multi-perspective quality control of Illumina RNA sequencing data analysis.

Sheng Q, Vickers K, Zhao S, Wang J, Samuels DC, Koues O, Shyr Y, Guo Y.

Brief Funct Genomics. 2017 Jul 1;16(4):194-204. doi: 10.1093/bfgp/elw035.


Practicability of mitochondrial heteroplasmy detection through an Illumina genotyping array.

Zhang P, Samuels DC, Zhao S, Wang J, Shyr Y, Guo Y.

Mitochondrion. 2016 Nov;31:75-78. doi: 10.1016/j.mito.2016.08.018. Epub 2016 Sep 11.


Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk.

Samuels DC, Wang J, Ye F, He J, Levinson RT, Sheng Q, Zhao S, Capra JA, Shyr Y, Zheng W, Guo Y.

Genetics. 2016 Nov;204(3):893-904. doi: 10.1534/genetics.116.189936. Epub 2016 Aug 31.


Genetically Predicted Body Mass Index and Breast Cancer Risk: Mendelian Randomization Analyses of Data from 145,000 Women of European Descent.

Guo Y, Warren Andersen S, Shu XO, Michailidou K, Bolla MK, Wang Q, Garcia-Closas M, Milne RL, Schmidt MK, Chang-Claude J, Dunning A, Bojesen SE, Ahsan H, Aittomäki K, Andrulis IL, Anton-Culver H, Arndt V, Beckmann MW, Beeghly-Fadiel A, Benitez J, Bogdanova NV, Bonanni B, Børresen-Dale AL, Brand J, Brauch H, Brenner H, Brüning T, Burwinkel B, Casey G, Chenevix-Trench G, Couch FJ, Cox A, Cross SS, Czene K, Devilee P, Dörk T, Dumont M, Fasching PA, Figueroa J, Flesch-Janys D, Fletcher O, Flyger H, Fostira F, Gammon M, Giles GG, Guénel P, Haiman CA, Hamann U, Hooning MJ, Hopper JL, Jakubowska A, Jasmine F, Jenkins M, John EM, Johnson N, Jones ME, Kabisch M, Kibriya M, Knight JA, Koppert LB, Kosma VM, Kristensen V, Le Marchand L, Lee E, Li J, Lindblom A, Luben R, Lubinski J, Malone KE, Mannermaa A, Margolin S, Marme F, McLean C, Meijers-Heijboer H, Meindl A, Neuhausen SL, Nevanlinna H, Neven P, Olson JE, Perez JI, Perkins B, Peterlongo P, Phillips KA, Pylkäs K, Rudolph A, Santella R, Sawyer EJ, Schmutzler RK, Seynaeve C, Shah M, Shrubsole MJ, Southey MC, Swerdlow AJ, Toland AE, Tomlinson I, Torres D, Truong T, Ursin G, Van Der Luijt RB, Verhoef S, Whittemore AS, Winqvist R, Zhao H, Zhao S, Hall P, Simard J, Kraft P, Pharoah P, Hunter D, Easton DF, Zheng W.

PLoS Med. 2016 Aug 23;13(8):e1002105. doi: 10.1371/journal.pmed.1002105. eCollection 2016 Aug.


lncRNA expression in the auditory forebrain during postnatal development.

Guo Y, Zhang P, Sheng Q, Zhao S, Hackett TA.

Gene. 2016 Nov 15;593(1):201-216. doi: 10.1016/j.gene.2016.08.027. Epub 2016 Aug 18.


Prolonged Benefit from Ipilimumab Correlates with Improved Outcomes from Subsequent Pembrolizumab.

Shreders A, Joseph R, Peng C, Ye F, Zhao S, Puzanov I, Sosman JA, Johnson DB.

Cancer Immunol Res. 2016 Jul;4(7):569-73. doi: 10.1158/2326-6066.CIR-15-0281. Epub 2016 May 13.


Practicability of detecting somatic point mutation from RNA high throughput sequencing data.

Sheng Q, Zhao S, Li CI, Shyr Y, Guo Y.

Genomics. 2016 May;107(5):163-9. doi: 10.1016/j.ygeno.2016.03.006. Epub 2016 Apr 2.


Mitochondria single nucleotide variation across six blood cell types.

Zhang P, Samuels DC, Wang J, Zhao S, Shyr Y, Guo Y.

Mitochondrion. 2016 May;28:16-22. doi: 10.1016/j.mito.2016.03.001. Epub 2016 Mar 5.

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