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Items: 1 to 50 of 149

1.

Request for revision of the Statutes of the International Committee on Systematics of Prokaryotes.

Whitman WB, Bull CT, Busse HJ, Fournier PE, Oren A, Ventura S.

Int J Syst Evol Microbiol. 2018 Dec 6. doi: 10.1099/ijsem.0.003117. [Epub ahead of print]

PMID:
30520713
2.

An efficient method for synthesizing dimethylsulfonio-34 S-propionate hydrochloride from 34 S8.

Wirth JS, Whitman WB.

J Labelled Comp Radiopharm. 2018 Nov 14. doi: 10.1002/jlcr.3696. [Epub ahead of print]

PMID:
30428130
3.

Effects of Reforestation on the Structure and Diversity of Bacterial Communities in Subtropical Low Mountain Forest Soils.

Lin YT, Whitman WB, Coleman DC, Chiu CY.

Front Microbiol. 2018 Aug 21;9:1968. doi: 10.3389/fmicb.2018.01968. eCollection 2018.

4.

The importance of designating type material for uncultured taxa.

Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P.

Syst Appl Microbiol. 2018 Jul 18. pii: S0723-2020(18)30200-5. doi: 10.1016/j.syapm.2018.07.003. [Epub ahead of print]

5.

Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae.

Estrada-de Los Santos P, Palmer M, Chávez-Ramírez B, Beukes C, Steenkamp ET, Briscoe L, Khan N, Maluk M, Lafos M, Humm E, Arrabit M, Crook M, Gross E, Simon MF, Dos Reis Junior FB, Whitman WB, Shapiro N, Poole PS, Hirsch AM, Venter SN, James EK.

Genes (Basel). 2018 Aug 1;9(8). pii: E389. doi: 10.3390/genes9080389.

6.

Dialogue on the nomenclature and classification of prokaryotes.

Rosselló-Móra R, Whitman WB.

Syst Appl Microbiol. 2018 Jul 7. pii: S0723-2020(18)30168-1. doi: 10.1016/j.syapm.2018.07.002. [Epub ahead of print] Review.

PMID:
30017185
7.

Methanogenesis.

Lyu Z, Shao N, Akinyemi T, Whitman WB.

Curr Biol. 2018 Jul 9;28(13):R727-R732. doi: 10.1016/j.cub.2018.05.021.

PMID:
29990451
8.

Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals.

Vorobev A, Sharma S, Yu M, Lee J, Washington BJ, Whitman WB, Ballantyne F 4th, Medeiros PM, Moran MA.

Environ Microbiol. 2018 Aug;20(8):3012-3030. doi: 10.1111/1462-2920.14344. Epub 2018 Jul 30.

PMID:
29968336
10.

Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica.

Pitt A, Schmidt J, Lang E, Whitman WB, Woyke T, Hahn MW.

Int J Syst Evol Microbiol. 2018 Jun;68(6):1975-1985. doi: 10.1099/ijsem.0.002777. Epub 2018 Apr 24.

11.

Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.

Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.

Front Microbiol. 2018 Mar 2;9:373. doi: 10.3389/fmicb.2018.00373. eCollection 2018.

12.

Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'.

Whitman WB, Oren A, Chuvochina M, da Costa MS, Garrity GM, Rainey FA, Rossello-Mora R, Schink B, Sutcliffe I, Trujillo ME, Ventura S.

Int J Syst Evol Microbiol. 2018 Mar;68(3):967-969. doi: 10.1099/ijsem.0.002593. Epub 2018 Jan 18.

PMID:
29458499
13.

Draft Genome Sequence of Monaibacterium marinum C7T, Isolated from Seawater from the Menai Straits, Wales, United Kingdom.

Chernikova TN, Kyrpides N, Bargiela R, Woyke T, Shapiro N, Whitman WB, Golyshin PN.

Genome Announc. 2018 Feb 1;6(5). pii: e01444-17. doi: 10.1128/genomeA.01444-17.

14.

A Flexible System for Cultivation of Methanococcus and Other Formate-Utilizing Methanogens.

Long F, Wang L, Lupa B, Whitman WB.

Archaea. 2017 Nov 19;2017:7046026. doi: 10.1155/2017/7046026. eCollection 2017.

15.

Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis.

Lyu Z, Chou CW, Shi H, Wang L, Ghebreab R, Phillips D, Yan Y, Duin EC, Whitman WB.

J Bacteriol. 2018 Mar 12;200(7). pii: e00746-17. doi: 10.1128/JB.00746-17. Print 2018 Apr 1.

16.

Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.

Proença DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV.

Syst Appl Microbiol. 2018 Mar;41(2):94-100. doi: 10.1016/j.syapm.2017.11.006. Epub 2017 Dec 22.

PMID:
29325988
17.

Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T.

Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindström K.

Stand Genomic Sci. 2017 Dec 5;12:74. doi: 10.1186/s40793-017-0283-x. eCollection 2017.

18.

Structural basis for tRNA-dependent cysteine biosynthesis.

Chen M, Kato K, Kubo Y, Tanaka Y, Liu Y, Long F, Whitman WB, Lill P, Gatsogiannis C, Raunser S, Shimizu N, Shinoda A, Nakamura A, Tanaka I, Yao M.

Nat Commun. 2017 Nov 15;8(1):1521. doi: 10.1038/s41467-017-01543-y.

19.

Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L.

Madhaiyan M, Alex THH, Cho H, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5150-5158. doi: 10.1099/ijsem.0.002434. Epub 2017 Oct 31.

PMID:
29087271
20.

Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.

Hahn MW, Schmidt J, Asiyo GS, Kyrpides NC, Woyke T, Whitman WB.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5087-5093. doi: 10.1099/ijsem.0.002421. Epub 2017 Oct 25.

21.

Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T.

Proença DN, Whitman WB, Shapiro N, Woyke T, Kyrpides NC, Morais PV.

Stand Genomic Sci. 2017 Sep 6;12:53. doi: 10.1186/s40793-017-0262-2. eCollection 2017.

22.

Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium.

Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3752-3758. doi: 10.1099/ijsem.0.002184. Epub 2017 Sep 12.

PMID:
28895512
23.

Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, Daum C, Shapiro N, Woyke T.

Genome Announc. 2017 Aug 31;5(35). pii: e00837-17. doi: 10.1128/genomeA.00837-17.

24.

Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, Daum C, Shapiro N, Woyke T.

Genome Announc. 2017 Aug 10;5(32). pii: e00796-17. doi: 10.1128/genomeA.00796-17.

25.

Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge.

Škraban J, Kyrpides NC, Shapiro N, Whitman WB, Trček J.

Braz J Microbiol. 2018 Jan - Mar;49(1):5-6. doi: 10.1016/j.bjm.2017.03.009. Epub 2017 Jul 18.

26.

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.

Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.

Front Microbiol. 2017 Jun 26;8:1154. doi: 10.3389/fmicb.2017.01154. eCollection 2017. Erratum in: Front Microbiol. 2018 Mar 02;9:373.

27.

Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata.

Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB.

Int J Syst Evol Microbiol. 2017 Jul;67(7):2127-2133. doi: 10.1099/ijsem.0.001901. Epub 2017 Jul 3.

PMID:
28671536
28.

Bacteria and the Fate of Estrogen in the Environment.

Whitman WB.

Cell Chem Biol. 2017 Jun 22;24(6):652-653. doi: 10.1016/j.chembiol.2017.05.028.

29.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.

30.

Changes in structure and function of bacterial communities during coconut leaf vermicomposting.

Gopal M, Bhute SS, Gupta A, Prabhu SR, Thomas GV, Whitman WB, Jangid K.

Antonie Van Leeuwenhoek. 2017 Oct;110(10):1339-1355. doi: 10.1007/s10482-017-0894-7. Epub 2017 Jun 9.

PMID:
28597254
31.

Proposed revisions of the Statutes of the International Committee of Systematics of Prokaryotes.

Whitman WB.

Int J Syst Evol Microbiol. 2017 Jun;67(6):2070-2072. doi: 10.1099/ijsem.0.001989. Epub 2017 Jun 7.

PMID:
28593833
32.

Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater.

Simon L, Škraban J, Kyrpides NC, Woyke T, Shapiro N, Cleenwerck I, Vandamme P, Whitman WB, Trček J.

Antonie Van Leeuwenhoek. 2017 Sep;110(9):1189-1197. doi: 10.1007/s10482-017-0891-x. Epub 2017 May 29.

PMID:
28555445
33.

Draft Genome Sequence of Pannonibacter indicus Strain HT23T (DSM 23407T), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India.

Bandyopadhyay S, Whitman WB, Das SK.

Genome Announc. 2017 May 4;5(18). pii: e00283-17. doi: 10.1128/genomeA.00283-17.

34.

Evolution of Dimethylsulfoniopropionate Metabolism in Marine Phytoplankton and Bacteria.

Bullock HA, Luo H, Whitman WB.

Front Microbiol. 2017 Apr 19;8:637. doi: 10.3389/fmicb.2017.00637. eCollection 2017. Review.

35.

Draft Genome Sequence of Rhizobiumpusense Strain NRCPB10T (LMG 25623T) Isolated from Rhizosphere Soil of Chickpeas (Cicer arietinum L.) Grown in India.

Badhai J, Whitman WB, Das SK.

Genome Announc. 2017 Apr 27;5(17). pii: e00282-17. doi: 10.1128/genomeA.00282-17.

36.

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

Patil Y, Müller N, Schink B, Whitman WB, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Junghare M.

Stand Genomic Sci. 2017 Feb 20;12:24. doi: 10.1186/s40793-017-0236-4. eCollection 2017.

37.

Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindström K.

Stand Genomic Sci. 2017 Jan 26;12:14. doi: 10.1186/s40793-017-0220-z. eCollection 2017.

38.

Sanguibacter gelidistatuariae sp. nov., a novel psychrotolerant anaerobe from an ice sculpture in Antarctica, and emendation of descriptions of the family Sanguibacteraceae, the genus Sanguibacter and species S. antarcticus, S. inulinus, S. kedieii, S. marinus, S. soli and S. suarezii.

Pikuta EV, Lyu Z, Williams MD, Patel NB, Liu Y, Hoover RB, Busse HJ, Lawson PA, Whitman WB.

Int J Syst Evol Microbiol. 2017 May;67(5):1442-1450. doi: 10.1099/ijsem.0.001838. Epub 2017 Jun 5.

PMID:
28150571
39.

Erratum to: Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Shanmugam SG, Magbanua ZV, Williams MA, Jangid K, Whitman WB, Peterson DG, Kingery WL.

Microb Ecol. 2017 Apr;73(3):570. doi: 10.1007/s00248-016-0909-3. No abstract available.

PMID:
27942767
40.

K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries.

Jangid K, Kao MH, Lahamge A, Williams MA, Rathbun SL, Whitman WB.

PLoS One. 2016 Dec 2;11(12):e0167634. doi: 10.1371/journal.pone.0167634. eCollection 2016.

41.

Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Shanmugam SG, Magbanua ZV, Williams MA, Jangid K, Whitman WB, Peterson DG, Kingery WL.

Microb Ecol. 2017 Apr;73(3):556-569. doi: 10.1007/s00248-016-0884-8. Epub 2016 Nov 26. Erratum in: Microb Ecol. 2017 Apr;73(3):570.

PMID:
27889811
42.

Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Ngan CY, Chovatia M, Daum C, Shapiro N, Cantor MN, Woyke T.

Genome Announc. 2016 Sep 8;4(5). pii: e00937-16. doi: 10.1128/genomeA.00937-16.

43.

Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India.

Narayan KD, Badhai J, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00834-16. doi: 10.1128/genomeA.00834-16.

44.

Draft Genome Sequence of Tepidiphilus thermophilus Strain JHK30T (JCM 19170T) Isolated from a Terrestrial Hot Spring in India.

Poddar A, Lepcha RT, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00832-16. doi: 10.1128/genomeA.00832-16.

45.

Draft Genome Sequence of Idiomarina woesei Strain W11T (DSM 27808T) Isolated from the Andaman Sea.

Lepcha RT, Poddar A, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00831-16. doi: 10.1128/genomeA.00831-16.

46.

Draft Genome Sequence of Gulbenkiania indica Strain HT27T (DSM 17901T) Isolated from a Sulfur Spring in India.

Badhai J, Narayan KD, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00830-16. doi: 10.1128/genomeA.00830-16.

47.

Draft Genome Sequence of Chelatococcus sambhunathii Strain HT4T (DSM 18167T) Isolated from a Hot Spring in India.

Badhai J, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00825-16. doi: 10.1128/genomeA.00825-16.

48.

Draft Genome Sequence of Anoxybacillus suryakundensis Strain JS1T (DSM 27374T) Isolated from a Hot Spring in Jharkhand, India.

Deep K, Poddar A, Whitman WB, Das SK.

Genome Announc. 2016 Aug 11;4(4). pii: e00824-16. doi: 10.1128/genomeA.00824-16.

49.

Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Ngan CY, Chovatia M, Daum C, Shapiro N, Cantor MN, Woyke T.

Genome Announc. 2016 Aug 4;4(4). pii: e00765-16. doi: 10.1128/genomeA.00765-16.

50.

Small RNAs expressed during dimethylsulfoniopropionate degradation by a model marine bacterium.

Burns AS, Bullock HA, Smith C, Huang Q, Whitman WB, Moran MA.

Environ Microbiol Rep. 2016 Oct;8(5):763-773. doi: 10.1111/1758-2229.12437. Epub 2016 Jul 12.

PMID:
27337503

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