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Items: 1 to 50 of 59

1.

Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case.

Tanaka M, Mino S, Ogura Y, Hayashi T, Sawabe T.

PeerJ. 2018 Jun 18;6:e5018. doi: 10.7717/peerj.5018. eCollection 2018.

2.

Correction: Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Dec 7;12(12):e0189555. doi: 10.1371/journal.pone.0189555. eCollection 2017.

3.

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

Gao F, Al-Saari N, Rohul Amin AKM, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Dec;40(8):516. doi: 10.1016/j.syapm.2017.10.002. No abstract available.

PMID:
29100655
4.

Corrigendum to "Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan" [Syst. Appl. Microbiol. 40 (5) (2017) 290-296].

Amin AKMR, Tanaka M, Al-Saari N, Feng G, Mino S, Ogura Y, Hayashi T, Meirelles PM, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2018 Jan;41(1):62-63. doi: 10.1016/j.syapm.2017.10.001. Epub 2017 Oct 18. No abstract available.

PMID:
29055507
5.

Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Jun 29;12(6):e0180053. doi: 10.1371/journal.pone.0180053. eCollection 2017. Erratum in: PLoS One. 2017 Dec 7;12 (12 ):e0189555.

6.

Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan.

Amin AKMR, Tanaka M, Al-Saari N, Feng G, Mino S, Ogura Y, Hayashi T, Meirelles PM, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Jul;40(5):290-296. doi: 10.1016/j.syapm.2017.04.003. Epub 2017 Jun 16. Erratum in: Syst Appl Microbiol. 2018 Jan;41(1):62-63.

PMID:
28648725
7.
8.

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents.

Mino S, Nakagawa S, Makita H, Toki T, Miyazaki J, Sievert SM, Polz MF, Inagaki F, Godfroy A, Kato S, Watanabe H, Nunoura T, Nakamura K, Imachi H, Watsuji TO, Kojima S, Takai K, Sawabe T.

ISME J. 2017 Apr;11(4):909-919. doi: 10.1038/ismej.2016.178. Epub 2017 Jan 3.

9.

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan.

Amin AK, Feng G, Al-Saari N, Meirelles PM, Yamazaki Y, Mino S, Thompson FL, Sawabe T, Sawabe T.

Front Microbiol. 2016 Aug 8;7:1185. doi: 10.3389/fmicb.2016.01185. eCollection 2016.

10.

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

Gao F, Al-Saari N, Rohul Amin AK, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2016 Jul;39(5):330-5. doi: 10.1016/j.syapm.2016.04.002. Epub 2016 May 24. Erratum in: Syst Appl Microbiol. 2017 Dec;40(8):516.

PMID:
27262360
11.

Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps.

Yamazaki Y, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Thompson FL, Sakai Y, Sawabe T, Sawabe T.

Sci Rep. 2016 Feb 24;6:21631. doi: 10.1038/srep21631.

12.

First microbiota assessments of children's paddling pool waters evaluated using 16S rRNA gene-based metagenome analysis.

Sawabe T, Suda W, Ohshima K, Hattori M, Sawabe T.

J Infect Public Health. 2016 May-Jun;9(3):362-5. doi: 10.1016/j.jiph.2015.11.008. Epub 2015 Dec 3.

13.

Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae.

Al-Saari N, Gao F, Rohul AA, Sato K, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Meirelles PM, Thompson FL, Thompson C, Filho GM, Gomez-Gil B, Sawabe T, Sawabe T.

PLoS One. 2015 Aug 27;10(8):e0136279. doi: 10.1371/journal.pone.0136279. eCollection 2015.

14.

Effects of Hemagglutination Activity in the Serum of a Deep-Sea Vent Endemic Crab, Shinkaia Crosnieri, on Non-Symbiotic and Symbiotic Bacteria.

Fujiyoshi S, Tateno H, Watsuji T, Yamaguchi H, Fukushima D, Mino S, Sugimura M, Sawabe T, Takai K, Sawayama S, Nakagawa S.

Microbes Environ. 2015;30(3):228-34. doi: 10.1264/jsme2.ME15066. Epub 2015 Jul 25.

15.

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data.

Meirelles PM, Amado-Filho GM, Pereira-Filho GH, Pinheiro HT, de Moura RL, Joyeux JC, Mazzei EF, Bastos AC, Edwards RA, Dinsdale E, Paranhos R, Santos EO, Iida T, Gotoh K, Nakamura S, Sawabe T, Rezende CE, Gadelha LM Jr, Francini-Filho RB, Thompson C, Thompson FL.

PLoS One. 2015 Jun 19;10(6):e0130084. doi: 10.1371/journal.pone.0130084. eCollection 2015.

16.

Microbial taxonomy in the post-genomic era: rebuilding from scratch?

Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL.

Arch Microbiol. 2015 Apr;197(3):359-70. doi: 10.1007/s00203-014-1071-2. Epub 2014 Dec 23.

PMID:
25533848
17.

Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants.

Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T.

Genome Announc. 2014 Dec 4;2(6). pii: e01236-14. doi: 10.1128/genomeA.01236-14.

18.

Corrigendum: Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

Sawabe T, Ogura Y, Matsumura Y, Feng G, Amin AK, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson FL, Gomez Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T.

Front Microbiol. 2014 Nov 4;5:583. doi: 10.3389/fmicb.2014.00583. eCollection 2014.

19.

Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.

Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T.

Genome Announc. 2014 Nov 13;2(6). pii: e01168-14. doi: 10.1128/genomeA.01168-14.

20.

Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.

Nakanishi M, Meirelles P, Suzuki R, Takatani N, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T.

Genome Announc. 2014 Nov 13;2(6). pii: e01165-14. doi: 10.1128/genomeA.01165-14.

21.

Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota.

Al-Saari N, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.

Genome Announc. 2014 Oct 30;2(5). pii: e01095-14. doi: 10.1128/genomeA.01095-14.

22.

Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean.

Alves Junior N, Meirelles PM, de Oliveira Santos E, Dutilh B, Silva GG, Paranhos R, Cabral AS, Rezende C, Iida T, de Moura RL, Kruger RH, Pereira RC, Valle R, Sawabe T, Thompson C, Thompson F.

Arch Microbiol. 2015 Mar;197(2):165-79. doi: 10.1007/s00203-014-1035-6. Epub 2014 Sep 10.

PMID:
25205422
23.

Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.

Ng HJ, López-Pérez M, Webb HK, Gomez D, Sawabe T, Ryan J, Vyssotski M, Bizet C, Malherbe F, Mikhailov VV, Crawford RJ, Ivanova EP.

PLoS One. 2014 Sep 8;9(9):e106514. doi: 10.1371/journal.pone.0106514. eCollection 2014.

24.

Sulfurovum aggregans sp. nov., a hydrogen-oxidizing, thiosulfate-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent chimney, and an emended description of the genus Sulfurovum.

Mino S, Kudo H, Arai T, Sawabe T, Takai K, Nakagawa S.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3195-201. doi: 10.1099/ijs.0.065094-0. Epub 2014 Jun 25.

PMID:
24966202
25.

Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T.

Ivanova EP, Ng HJ, Webb HK, Feng G, Oshima K, Hattori M, Ohkuma M, Sergeev AF, Mikhailov VV, Crawford RJ, Sawabe T.

Genome Announc. 2014 May 22;2(3). pii: e00442-14. doi: 10.1128/genomeA.00442-14.

26.

Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

Sawabe T, Ogura Y, Matsumura Y, Feng G, Amin AR, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson FL, Gomez-Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T.

Front Microbiol. 2013 Dec 27;4:414. doi: 10.3389/fmicb.2013.00414. eCollection 2013. Erratum in: Front Microbiol. 2014;5:583.

27.

Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia.

Rameshkumar N, Krishnan R, Lang E, Matsumura Y, Sawabe T, Sawabe T.

Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):545-50. doi: 10.1099/ijs.0.053512-0. Epub 2013 Oct 14.

PMID:
24126636
28.

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean.

Cavalcanti GS, Gregoracci GB, dos Santos EO, Silveira CB, Meirelles PM, Longo L, Gotoh K, Nakamura S, Iida T, Sawabe T, Rezende CE, Francini-Filho RB, Moura RL, Amado-Filho GM, Thompson FL.

ISME J. 2014 Jan;8(1):52-62. doi: 10.1038/ismej.2013.133. Epub 2013 Aug 29.

29.

Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont.

Nakagawa S, Shimamura S, Takaki Y, Suzuki Y, Murakami S, Watanabe T, Fujiyoshi S, Mino S, Sawabe T, Maeda T, Makita H, Nemoto S, Nishimura S, Watanabe H, Watsuji TO, Takai K.

ISME J. 2014 Jan;8(1):40-51. doi: 10.1038/ismej.2013.131. Epub 2013 Aug 8.

30.

Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific.

Mino S, Makita H, Toki T, Miyazaki J, Kato S, Watanabe H, Imachi H, Watsuji TO, Nunoura T, Kojima S, Sawabe T, Takai K, Nakagawa S.

Front Microbiol. 2013 Apr 25;4:107. doi: 10.3389/fmicb.2013.00107. eCollection 2013.

31.

Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals.

Garcia GD, Gregoracci GB, Santos Ede O, Meirelles PM, Silva GG, Edwards R, Sawabe T, Gotoh K, Nakamura S, Iida T, de Moura RL, Thompson FL.

Microb Ecol. 2013 May;65(4):1076-86. doi: 10.1007/s00248-012-0161-4. Epub 2013 Jan 15.

PMID:
23314124
32.

Microbial communities associated with holothurians: presence of unique bacteria in the coelomic fluid.

Enomoto M, Nakagawa S, Sawabe T.

Microbes Environ. 2012;27(3):300-5. Epub 2012 Mar 23.

33.

Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough.

Izumi H, Nunoura T, Miyazaki M, Mino S, Toki T, Takai K, Sako Y, Sawabe T, Nakagawa S.

Extremophiles. 2012 Mar;16(2):245-53. doi: 10.1007/s00792-011-0425-9. Epub 2012 Jan 3.

PMID:
22212657
34.

Vibrio jasicida sp. nov., a member of the Harveyi clade, isolated from marine animals (packhorse lobster, abalone and Atlantic salmon).

Yoshizawa S, Tsuruya Y, Fukui Y, Sawabe T, Yokota A, Kogure K, Higgins M, Carson J, Thompson FL.

Int J Syst Evol Microbiol. 2012 Aug;62(Pt 8):1864-70. doi: 10.1099/ijs.0.025916-0. Epub 2011 Oct 7.

PMID:
21984666
35.

[Biodiversity and evolution of vibrios].

Sawabe T.

Nihon Saikingaku Zasshi. 2010 Dec;65(2-4):333-42. Review. Japanese. No abstract available.

36.

Vibrio2009: the third international conference on the biology of Vibrios.

Thompson FL, Thompson CC, Vicente AC, Klose KE; AVIB Group.

Mol Microbiol. 2010 Sep;77(5):1065-71. doi: 10.1111/j.1365-2958.2010.07286.x.

37.

Environmental determinants correlated to Vibrio harveyi-mediated death of marine gastropods.

Fukui Y, Saitoh S, Sawabe T.

Environ Microbiol. 2010 Jan;12(1):124-33. doi: 10.1111/j.1462-2920.2009.02052.x. Epub 2009 Sep 16.

PMID:
19758346
38.

Mutation is the Main Driving Force in the Diversification of the Vibrio splendidus Clade.

Sawabe T, Koizumi S, Fukui Y, Nakagawa S, Ivanova EP, Kita-Tsukamoto K, Kogure K, Thompson FL.

Microbes Environ. 2009;24(4):281-5.

39.

Multi-Probe-Fluorescence in situ Hybridization for the Rapid Enumeration of Viable Vibrio parahaemolyticus.

Sawabe T, Yoshizawa A, Kawanishi Y, Komatsu-Takeda E, Nakagawa S, Sawabe T, Ootubo M, Satomi M, Yano Y, Yamazaki K.

Microbes Environ. 2009;24(3):259-64.

40.

Poly(ethylene terephthalate) polymer surfaces as a substrate for bacterial attachment and biofilm formation.

Webb HK, Crawford RJ, Sawabe T, Ivanova EP.

Microbes Environ. 2009;24(1):39-42.

41.

Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).

Rameshkumar N, Fukui Y, Sawabe T, Nair S.

Int J Syst Evol Microbiol. 2008 Jul;58(Pt 7):1608-15. doi: 10.1099/ijs.0.65604-0.

PMID:
18599703
42.

Rapid Detection of Vibrio harveyi in Seawater by Real-Time PCR.

Fukui Y, Sawabe T.

Microbes Environ. 2008;23(2):172-6.

43.

Inferring the evolutionary history of vibrios by means of multilocus sequence analysis.

Sawabe T, Kita-Tsukamoto K, Thompson FL.

J Bacteriol. 2007 Nov;189(21):7932-6. Epub 2007 Aug 17.

44.

Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species.

Thompson FL, Gomez-Gil B, Vasconcelos AT, Sawabe T.

Appl Environ Microbiol. 2007 Jul;73(13):4279-85. Epub 2007 May 4.

45.
46.

Vibrio neonatus sp. nov. and Vibrio ezurae sp. nov. isolated from the gut of Japanese abalones.

Sawabe T, Hayashi K, Moriwaki J, Fukui Y, Thompson FL, Swings J, Christen R.

Syst Appl Microbiol. 2004 Sep;27(5):527-34.

PMID:
15490553
47.

Shewanella affinis sp. nov., isolated from marine invertebrates.

Ivanova EP, Nedashkovskaya OI, Sawabe T, Zhukova NV, Frolova GM, Nicolau DV, Mikhailov VV, Bowman JP.

Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1089-93.

PMID:
15280274
48.

Vibrio gallicus sp. nov., isolated from the gut of the French abalone Haliotis tuberculata.

Sawabe T, Hayashi K, Moriwaki J, Thompson FL, Swings J, Potin P, Christen R, Ezura Y.

Int J Syst Evol Microbiol. 2004 May;54(Pt 3):843-6.

PMID:
15143033
49.

Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea grass (Zostera marina).

Ivanova EP, Gorshkova NM, Sawabe T, Zhukova NV, Hayashi K, Kurilenko VV, Alexeeva Y, Buljan V, Nicolau DV, Mikhailov VV, Christen R.

Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):475-80.

PMID:
15023963
50.

Vibrio superstes sp. nov., isolated from the gut of Australian abalones Haliotis laevigata and Haliotis rubra.

Hayashi K, Moriwaki J, Sawabe T, Thompson FL, Swings J, Gudkovs N, Christen R, Ezura Y.

Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):1813-7.

PMID:
14657109

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