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Items: 1 to 50 of 116


Empirical treatment of urinary tract infections: how rational are our guidelines?

O'Grady MC, Barry L, Corcoran GD, Hooton C, Sleator RD, Lucey B.

J Antimicrob Chemother. 2018 Oct 8. doi: 10.1093/jac/dky405. [Epub ahead of print]


Trials and Tribulations of Enteric Parasitology in the Molecular Era.

O' Leary JK, Blake L, Corcoran D, Sleator RD, Lucey B.

J Med Microbiol. 2018 Feb;67(2):145-147. doi: 10.1099/jmm.0.000670. Epub 2017 Dec 21. No abstract available.


So long, farewell, Auf Wiedersehen, Adieu….

Sleator RD.

Bioengineered. 2018 Jan 1;9(1):1. doi: 10.1080/21655979.2017.1404788. Epub 2017 Nov 30. No abstract available.


Directed panspermia: a 21st century perspective.

Sleator RD, Smith N.

Sci Prog. 2017 May 1;100(2):187-193. doi: 10.3184/003685017X14901006155062.


TRAPPIST-1: The dawning of the age of Aquarius.

Sleator RD, Smith N.

Bioengineered. 2017 May 4;8(3):194-195. doi: 10.1080/21655979.2017.1306998. Epub 2017 Mar 21. No abstract available.


Antibiotics v2.0: computational and synthetic biology approaches to combat antibiotic resistance.

Culligan EP, Sleator RD.

Future Microbiol. 2017 Mar;12:267-269. doi: 10.2217/fmb-2017-0005. Epub 2017 Mar 3. No abstract available.


Engineered Probiotics: Applications and Biological Containment.

Sola-Oladokun B, Culligan EP, Sleator RD.

Annu Rev Food Sci Technol. 2017 Feb 28;8:353-370. doi: 10.1146/annurev-food-030216-030256. Epub 2017 Jan 11.


Advances in the Microbiome: Applications to Clostridium difficile Infection.

Culligan EP, Sleator RD.

J Clin Med. 2016 Sep 21;5(9). pii: E83. doi: 10.3390/jcm5090083. Review.


Editorial: From Genes to Species: Novel Insights from Metagenomics.

Culligan EP, Sleator RD.

Front Microbiol. 2016 Aug 3;7:1181. doi: 10.3389/fmicb.2016.01181. eCollection 2016. No abstract available.


Changing Diagnostic Methods and Increased Detection of Verotoxigenic Escherichia coli, Ireland.

Rice T, Quinn N, Sleator RD, Lucey B.

Emerg Infect Dis. 2016 Sep;22(9):1656-7. doi: 10.3201/eid2209.160477. Epub 2016 Sep 15.


Synthetic biology: from mainstream to counterculture.

Sleator RD.

Arch Microbiol. 2016 Sep;198(7):711-3. doi: 10.1007/s00203-016-1257-x. Epub 2016 Jun 17. Review.


Shedding light on betL*: pPL2-lux mediated real-time analysis of betL* expression in Listeria monocytogenes.

Keane SM, Culligan EP, Hoffmann RF, Gahan CG, Hill C, Snelling WJ, Sleator RD.

Bioengineered. 2016 Apr 2;7(2):116-9. doi: 10.1080/21655979.2016.1171438.


Stool consistency: no hard and fast rules for the diagnosis of VTEC infection.

Ross S, O'Callaghan I, Jermy R, Blake L, Corcoran D, Sleator RD, Lucey B.

J Clin Pathol. 2016 Sep;69(9):837. doi: 10.1136/jclinpath-2016-203792. Epub 2016 May 4. No abstract available.


JCVI-syn3.0 - A synthetic genome stripped bare!

Sleator RD.

Bioengineered. 2016 Apr 2;7(2):53-6. doi: 10.1080/21655979.2016.1175847. No abstract available.


Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Clooney AG, Fouhy F, Sleator RD, O' Driscoll A, Stanton C, Cotter PD, Claesson MJ.

PLoS One. 2016 Feb 5;11(2):e0148028. doi: 10.1371/journal.pone.0148028. eCollection 2016.


Under the microscope: From pathogens to probiotics and back.

Sleator RD.

Bioengineered. 2015;6(5):275-82. doi: 10.1080/21655979.2015.1089368. Review.


Designer probiotics: Development and applications in gastrointestinal health.

Sleator RD.

World J Gastrointest Pathophysiol. 2015 Aug 15;6(3):73-8. doi: 10.4291/wjgp.v6.i3.73. Review.


Functional Screening of the Cronobacter sakazakii BAA-894 Genome reveals a role for ProP (ESA_02131) in carnitine uptake.

Feeney A, Sleator RD.

Bioengineered. 2015;6(3):161-5. doi: 10.1080/21655979.2015.1043500. Epub 2015 Apr 27.


Genomics of Weissella cibaria with an examination of its metabolic traits.

Lynch KM, Lucid A, Arendt EK, Sleator RD, Lucey B, Coffey A.

Microbiology. 2015 Apr;161(Pt 4):914-30. doi: 10.1099/mic.0.000053. Epub 2015 Feb 12.


HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.

O'Driscoll A, Belogrudov V, Carroll J, Kropp K, Walsh P, Ghazal P, Sleator RD.

J Biomed Inform. 2015 Apr;54:58-64. doi: 10.1016/j.jbi.2015.01.008. Epub 2015 Jan 24.


Cronobacter sakazakii: stress survival and virulence potential in an opportunistic foodborne pathogen.

Feeney A, Kropp KA, O'Connor R, Sleator RD.

Gut Microbes. 2014;5(6):711-8. doi: 10.4161/19490976.2014.983774. Review.


The role of the Cronobacter sakazakii ProP C-terminal coiled coil domain in osmotolerance.

Feeney A, Johnston CD, Lucid A, O'Mahony J, Coffey A, Lucey B, Sleator RD.

Gut Pathog. 2014 Dec 16;6(1):46. doi: 10.1186/s13099-014-0046-9. eCollection 2014.


The genetic code. Rewritten, revised, repurposed.

Sleator RD.

Artif DNA PNA XNA. 2014;5(2):e29408. doi: 10.4161/adna.29408.


Enhanced expression of codon optimized Mycobacterium avium subsp. paratuberculosis antigens in Lactobacillus salivarius.

Johnston CD, Bannantine JP, Govender R, Endersen L, Pletzer D, Weingart H, Coffey A, O'Mahony J, Sleator RD.

Front Cell Infect Microbiol. 2014 Sep 4;4:120. doi: 10.3389/fcimb.2014.00120. eCollection 2014.


Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

Culligan EP, Sleator RD, Marchesi JR, Hill C.

PLoS One. 2014 Jul 24;9(7):e103318. doi: 10.1371/journal.pone.0103318. eCollection 2014.


Analysis of the role of the Cronobacter sakazakii ProP homologues in osmotolerance.

Feeney A, Johnston CD, Govender R, O'Mahony J, Coffey A, Sleator RD.

Gut Pathog. 2014 May 24;6:15. doi: 10.1186/1757-4749-6-15. eCollection 2014.


Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).

Koziel M, O'Doherty P, Vandamme P, Corcoran GD, Sleator RD, Lucey B.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2878-83. doi: 10.1099/ijs.0.063867-0. Epub 2014 May 29.


Genetics just got SEXY: Sequences encoding XY.

Sleator RD.

Bioengineered. 2014 Jul-Aug;5(4):214-5. doi: 10.4161/bioe.29306. Epub 2014 May 21.


Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome.

Culligan EP, Marchesi JR, Hill C, Sleator RD.

Front Microbiol. 2014 Apr 29;5:189. doi: 10.3389/fmicb.2014.00189. eCollection 2014.


Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus).

Koziel M, Lucid A, Bullman S, Corcoran GD, Lucey B, Sleator RD.

Genome Announc. 2014 Apr 17;2(2). pii: e00248-14. doi: 10.1128/genomeA.00248-14.


Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.

Koziel M, Corcoran GD, Sleator RD, Lucey B.

Gut Pathog. 2014 Apr 16;6:9. doi: 10.1186/1757-4749-6-9. eCollection 2014.


Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.

Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B.

Genome Announc. 2014 Apr 10;2(2). pii: e00262-14. doi: 10.1128/genomeA.00262-14.


Campylobacter ureolyticus: a portrait of the pathogen.

O'Donovan D, Corcoran GD, Lucey B, Sleator RD.

Virulence. 2014 May 15;5(4):498-506. doi: 10.4161/viru.28776. Epub 2014 Apr 9. Review.


The synthetic biology future.

Sleator RD.

Bioengineered. 2014 Mar-Apr;5(2):69-72. doi: 10.4161/bioe.28317. Epub 2014 Feb 21.


Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome.

Culligan EP, Sleator RD, Marchesi JR, Hill C.

PLoS One. 2013 Dec 12;8(12):e82985. doi: 10.1371/journal.pone.0082985. eCollection 2013.


Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics.

Manning T, Sleator RD, Walsh P.

Bioengineered. 2014 Mar-Apr;5(2):80-95. doi: 10.4161/bioe.26997. Epub 2013 Dec 16. Review.


Metagenomics and novel gene discovery: promise and potential for novel therapeutics.

Culligan EP, Sleator RD, Marchesi JR, Hill C.

Virulence. 2014 Apr 1;5(3):399-412. doi: 10.4161/viru.27208. Epub 2013 Apr 1. Review.


Accelerating in silico research with workflows: a lesson in Simplicity.

Walsh P, Carroll J, Sleator RD.

Comput Biol Med. 2013 Dec;43(12):2028-35. doi: 10.1016/j.compbiomed.2013.09.011. Epub 2013 Sep 25.


Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus.

Bullman S, Lucid A, Corcoran D, Sleator RD, Lucey B.

PLoS One. 2013 Aug 30;8(8):e71515. doi: 10.1371/journal.pone.0071515. eCollection 2013.


Digitizing humanity.

Sleator RD, O'Driscoll A.

Artif DNA PNA XNA. 2013 Apr-Jun;4(2):37-8.


'Big data', Hadoop and cloud computing in genomics.

O'Driscoll A, Daugelaite J, Sleator RD.

J Biomed Inform. 2013 Oct;46(5):774-81. doi: 10.1016/j.jbi.2013.07.001. Epub 2013 Jul 18.


Improved detection of bacterial pathogens in patients presenting with gastroenteritis by use of the EntericBio real-time Gastro Panel I assay.

Koziel M, Kiely R, Blake L, O'Callaghan I, Corcoran GD, Lucey B, Sleator RD.

J Clin Microbiol. 2013 Aug;51(8):2679-85. doi: 10.1128/JCM.00809-13. Epub 2013 Jun 12.


A beginner's guide to phylogenetics.

Sleator RD.

Microb Ecol. 2013 Jul;66(1):1-4. doi: 10.1007/s00248-013-0236-x. Epub 2013 Apr 28. Review.


Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius.

Johnston C, Douarre PE, Soulimane T, Pletzer D, Weingart H, MacSharry J, Coffey A, Sleator RD, O'Mahony J.

Pathog Dis. 2013 Jun;68(1):27-38. doi: 10.1111/2049-632X.12040. Epub 2013 Apr 18.


Synthetic DNA: the next generation of big data storage.

O' Driscoll A, Sleator RD.

Bioengineered. 2013 May-Jun;4(3):123-5. doi: 10.4161/bioe.24296. Epub 2013 Mar 20.


A single point mutation in the listerial betL σ(A)-dependent promoter leads to improved osmo- and chill-tolerance and a morphological shift at elevated osmolarity.

Hoffmann RF, McLernon S, Feeney A, Hill C, Sleator RD.

Bioengineered. 2013 Nov-Dec;4(6):401-7. doi: 10.4161/bioe.24094. Epub 2013 Mar 11.


Synthetic ribosomes: making molecules that make molecules.

Sleator RD.

Bioengineered. 2013 Mar-Apr;4(2):63-4. doi: 10.4161/bioe.23640. Epub 2013 Jan 16. No abstract available.


An Update on Global Tuberculosis (TB).

Talip BA, Sleator RD, Lowery CJ, Dooley JS, Snelling WJ.

Infect Dis (Auckl). 2013 May 21;6:39-50. doi: 10.4137/IDRT.S11263. eCollection 2013. Review.


Naturally selecting solutions: the use of genetic algorithms in bioinformatics.

Manning T, Sleator RD, Walsh P.

Bioengineered. 2013 Sep-Oct;4(5):266-78. doi: 10.4161/bioe.23041. Epub 2012 Dec 6. Review.


Validation of the EntericBio Panel II® multiplex polymerase chain reaction system for detection of Campylobacter spp., Salmonella spp., Shigella spp., and verotoxigenic E. coli for use in a clinical diagnostic setting.

Koziel M, Corcoran D, O'Callaghan I, Sleator RD, Lucey B.

Diagn Microbiol Infect Dis. 2013 Jan;75(1):46-9. doi: 10.1016/j.diagmicrobio.2012.09.007. Epub 2012 Nov 20.


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