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Items: 43

1.

Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench.

Liu J, Zheng Y, Lin H, Wang X, Li M, Liu Y, Yu M, Zhao M, Pedentchouk N, Lea-Smith DJ, Todd JD, Magill CR, Zhang WJ, Zhou S, Song D, Zhong H, Xin Y, Yu M, Tian J, Zhang XH.

Microbiome. 2019 Apr 12;7(1):47. doi: 10.1186/s40168-019-0652-3.

2.

Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.

Peng M, Chen XL, Zhang D, Wang XJ, Wang N, Wang P, Todd JD, Zhang YZ, Li CY.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e03127-18. doi: 10.1128/AEM.03127-18. Print 2019 Apr 15.

PMID:
30770407
3.

Author Correction: DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.

Curson ARJ, Williams BT, Pinchbeck BJ, Sims LP, Martínez AB, Rivera PPL, Kumaresan D, Mercadé E, Spurgin LG, Carrión O, Moxon S, Cattolico RA, Kuzhiumparambil U, Guagliardo P, Clode PL, Raina JB, Todd JD.

Nat Microbiol. 2019 Mar;4(3):540-542. doi: 10.1038/s41564-019-0386-9.

PMID:
30700867
4.

Mechanistic insight into 3-methylmercaptopropionate metabolism and kinetical regulation of demethylation pathway in marine dimethylsulfoniopropionate-catabolizing bacteria.

Shao X, Cao HY, Zhao F, Peng M, Wang P, Li CY, Shi WL, Wei TD, Yuan Z, Zhang XH, Chen XL, Todd JD, Zhang YZ.

Mol Microbiol. 2019 Apr;111(4):1057-1073. doi: 10.1111/mmi.14211. Epub 2019 Mar 4.

PMID:
30677184
5.

Novel Insights Into Bacterial Dimethylsulfoniopropionate Catabolism in the East China Sea.

Liu J, Liu J, Zhang SH, Liang J, Lin H, Song D, Yang GP, Todd JD, Zhang XH.

Front Microbiol. 2018 Dec 21;9:3206. doi: 10.3389/fmicb.2018.03206. eCollection 2018.

6.

Comparative Genomics and Mutational Analysis Reveals a Novel XoxF-Utilizing Methylotroph in the Roseobacter Group Isolated From the Marine Environment.

Howat AM, Vollmers J, Taubert M, Grob C, Dixon JL, Todd JD, Chen Y, Kaster AK, Murrell JC.

Front Microbiol. 2018 Apr 27;9:766. doi: 10.3389/fmicb.2018.00766. eCollection 2018.

7.

Sensing iron availability via the fragile [4Fe-4S] cluster of the bacterial transcriptional repressor RirA.

Pellicer Martinez MT, Martinez AB, Crack JC, Holmes JD, Svistunenko DA, Johnston AWB, Cheesman MR, Todd JD, Le Brun NE.

Chem Sci. 2017 Dec 1;8(12):8451-8463. doi: 10.1039/c7sc02801f. Epub 2017 Oct 23.

8.

DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.

Curson ARJ, Williams BT, Pinchbeck BJ, Sims LP, Martínez AB, Rivera PPL, Kumaresan D, Mercadé E, Spurgin LG, Carrión O, Moxon S, Cattolico RA, Kuzhiumparambil U, Guagliardo P, Clode PL, Raina JB, Todd JD.

Nat Microbiol. 2018 Apr;3(4):430-439. doi: 10.1038/s41564-018-0119-5. Epub 2018 Feb 26. Erratum in: Nat Microbiol. 2019 Mar;4(3):540-542.

PMID:
29483657
9.

Mechanistic Insights into Dimethylsulfoniopropionate Lyase DddY, a New Member of the Cupin Superfamily.

Li CY, Zhang D, Chen XL, Wang P, Shi WL, Li PY, Zhang XY, Qin QL, Todd JD, Zhang YZ.

J Mol Biol. 2017 Dec 8;429(24):3850-3862. doi: 10.1016/j.jmb.2017.10.022. Epub 2017 Oct 26.

PMID:
29106934
10.

Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere.

Eyice Ö, Myronova N, Pol A, Carrión O, Todd JD, Smith TJ, Gurman SJ, Cuthbertson A, Mazard S, Mennink-Kersten MA, Bugg TD, Andersson KK, Johnston AW, Op den Camp HJ, Schäfer H.

ISME J. 2018 Jan;12(1):145-160. doi: 10.1038/ismej.2017.148. Epub 2017 Oct 24.

11.

Methanethiol-dependent dimethylsulfide production in soil environments.

Carrión O, Pratscher J, Curson ARJ, Williams BT, Rostant WG, Murrell JC, Todd JD.

ISME J. 2017 Oct;11(10):2379-2390. doi: 10.1038/ismej.2017.105. Epub 2017 Aug 1.

12.

Mechanistic insight into acrylate metabolism and detoxification in marine dimethylsulfoniopropionate-catabolizing bacteria.

Wang P, Cao HY, Chen XL, Li CY, Li PY, Zhang XY, Qin QL, Todd JD, Zhang YZ.

Mol Microbiol. 2017 Sep;105(5):674-688. doi: 10.1111/mmi.13727. Epub 2017 Jul 7.

13.

Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter.

Schnicker NJ, De Silva SM, Todd JD, Dey M.

Biochemistry. 2017 Jun 13;56(23):2873-2885. doi: 10.1021/acs.biochem.7b00099. Epub 2017 May 30.

PMID:
28511016
14.

Recumbent Stepper Submaximal Test response is reliable in adults with and without stroke.

Wilson DR, Mattlage AE, Seier NM, Todd JD, Price BG, Kwapiszeski SJ, Vardey R, Billinger SA.

PLoS One. 2017 Feb 16;12(2):e0172294. doi: 10.1371/journal.pone.0172294. eCollection 2017.

15.

Dimethylsulfoniopropionate biosynthesis in marine bacteria and identification of the key gene in this process.

Curson AR, Liu J, Bermejo Martínez A, Green RT, Chan Y, Carrión O, Williams BT, Zhang SH, Yang GP, Bulman Page PC, Zhang XH, Todd JD.

Nat Microbiol. 2017 Feb 13;2:17009. doi: 10.1038/nmicrobiol.2017.9.

PMID:
28191900
16.

Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 Oct 3;1(11):16210. doi: 10.1038/nmicrobiol.2016.210. No abstract available.

PMID:
27694837
17.

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 May 16;1(8):16065. doi: 10.1038/nmicrobiol.2016.65. Erratum in: Nat Microbiol. 2016 Oct 03;1(11):16210.

PMID:
27573103
18.

Enzymatic breakage of dimethylsulfoniopropionate-a signature molecule for life at sea.

Johnston AW, Green RT, Todd JD.

Curr Opin Chem Biol. 2016 Apr;31:58-65. doi: 10.1016/j.cbpa.2016.01.011. Epub 2016 Feb 4. Review.

PMID:
26851513
19.

Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW--A Mononuclear Iron-Dependent DMSP Lyase.

Brummett AE, Schnicker NJ, Crider A, Todd JD, Dey M.

PLoS One. 2015 May 19;10(5):e0127288. doi: 10.1371/journal.pone.0127288. eCollection 2015.

20.

Screening of metagenomic and genomic libraries reveals three classes of bacterial enzymes that overcome the toxicity of acrylate.

Curson AR, Burns OJ, Voget S, Daniel R, Todd JD, McInnis K, Wexler M, Johnston AW.

PLoS One. 2014 May 21;9(5):e97660. doi: 10.1371/journal.pone.0097660. eCollection 2014.

21.

Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.

Green RT, Todd JD, Johnston AW.

ISME J. 2013 Mar;7(3):581-91. doi: 10.1038/ismej.2012.140. Epub 2012 Nov 29.

22.

The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.

Todd JD, Curson AR, Sullivan MJ, Kirkwood M, Johnston AW.

PLoS One. 2012;7(4):e35947. doi: 10.1371/journal.pone.0035947. Epub 2012 Apr 26.

23.

Phylogenetic diversity of the dddP gene for dimethylsulfoniopropionate-dependent dimethyl sulfide synthesis in mangrove soils.

Peng M, Xie Q, Hu H, Hong K, Todd JD, Johnston AW, Li Y.

Can J Microbiol. 2012 Apr;58(4):523-30. doi: 10.1139/w2012-019. Epub 2012 Mar 29.

PMID:
22458859
24.

Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes.

Curson AR, Todd JD, Sullivan MJ, Johnston AW.

Nat Rev Microbiol. 2011 Oct 11;9(12):849-59. doi: 10.1038/nrmicro2653. Review.

PMID:
21986900
25.

DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.

Todd JD, Kirkwood M, Newton-Payne S, Johnston AW.

ISME J. 2012 Jan;6(1):223-6. doi: 10.1038/ismej.2011.79. Epub 2011 Jun 16.

26.

Heme binding to the second, lower-affinity site of the global iron regulator Irr from Rhizobium leguminosarum promotes oligomerization.

White GF, Singleton C, Todd JD, Cheesman MR, Johnston AW, Le Brun NE.

FEBS J. 2011 Jun;278(12):2011-21. doi: 10.1111/j.1742-4658.2011.08117.x. Epub 2011 May 17.

27.

Unusual regulation of a leaderless operon involved in the catabolism of dimethylsulfoniopropionate in Rhodobacter sphaeroides.

Sullivan MJ, Curson AR, Shearer N, Todd JD, Green RT, Johnston AW.

PLoS One. 2011 Jan 7;6(1):e15972. doi: 10.1371/journal.pone.0015972.

28.

DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria.

Curson AR, Sullivan MJ, Todd JD, Johnston AW.

ISME J. 2011 Jul;5(7):1191-200. doi: 10.1038/ismej.2010.203. Epub 2011 Jan 20.

29.

DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria.

Todd JD, Curson AR, Kirkwood M, Sullivan MJ, Green RT, Johnston AW.

Environ Microbiol. 2011 Feb;13(2):427-38. doi: 10.1111/j.1462-2920.2010.02348.x. Epub 2010 Sep 30.

PMID:
20880330
30.

The dddP gene of Roseovarius nubinhibens encodes a novel lyase that cleaves dimethylsulfoniopropionate into acrylate plus dimethyl sulfide.

Kirkwood M, Le Brun NE, Todd JD, Johnston AW.

Microbiology. 2010 Jun;156(Pt 6):1900-6. doi: 10.1099/mic.0.038927-0. Epub 2010 Apr 8.

PMID:
20378650
31.

Heme-responsive DNA binding by the global iron regulator Irr from Rhizobium leguminosarum.

Singleton C, White GF, Todd JD, Marritt SJ, Cheesman MR, Johnston AW, Le Brun NE.

J Biol Chem. 2010 May 21;285(21):16023-31. doi: 10.1074/jbc.M109.067215. Epub 2010 Mar 16.

32.

Molecular dissection of bacterial acrylate catabolism--unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production.

Todd JD, Curson AR, Nikolaidou-Katsaraidou N, Brearley CA, Watmough NJ, Chan Y, Page PC, Sun L, Johnston AW.

Environ Microbiol. 2010 Feb;12(2):327-43. doi: 10.1111/j.1462-2920.2009.02071.x. Epub 2009 Oct 5.

PMID:
19807777
33.

The opportunistic coral pathogen Aspergillus sydowii contains dddP and makes dimethyl sulfide from dimethylsulfoniopropionate.

Kirkwood M, Todd JD, Rypien KL, Johnston AW.

ISME J. 2010 Jan;4(1):147-50. doi: 10.1038/ismej.2009.102. Epub 2009 Sep 24.

PMID:
19776768
34.

Identification of genes for dimethyl sulfide production in bacteria in the gut of Atlantic Herring (Clupea harengus).

Curson AR, Sullivan MJ, Todd JD, Johnston AW.

ISME J. 2010 Jan;4(1):144-6. doi: 10.1038/ismej.2009.93. Epub 2009 Aug 27.

PMID:
19710707
35.

Molecular diversity of bacterial production of the climate-changing gas, dimethyl sulphide, a molecule that impinges on local and global symbioses.

Johnston AW, Todd JD, Sun L, Nikolaidou-Katsaridou MN, Curson AR, Rogers R.

J Exp Bot. 2008;59(5):1059-67. doi: 10.1093/jxb/erm264. Epub 2008 Feb 16. Review.

PMID:
18281720
36.

Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacterium Rhizobium and other alpha-proteobacteria.

Johnston AW, Todd JD, Curson AR, Lei S, Nikolaidou-Katsaridou N, Gelfand MS, Rodionov DA.

Biometals. 2007 Jun;20(3-4):501-11. Epub 2007 Feb 20. Review.

PMID:
17310401
37.

Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria.

Todd JD, Rogers R, Li YG, Wexler M, Bond PL, Sun L, Curson AR, Malin G, Steinke M, Johnston AW.

Science. 2007 Feb 2;315(5812):666-9.

38.

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria.

Rodionov DA, Gelfand MS, Todd JD, Curson AR, Johnston AW.

PLoS Comput Biol. 2006 Dec 15;2(12):e163. Epub 2006 Oct 18.

39.

The genome of Rhizobium leguminosarum has recognizable core and accessory components.

Young JP, Crossman LC, Johnston AW, Thomson NR, Ghazoui ZF, Hull KH, Wexler M, Curson AR, Todd JD, Poole PS, Mauchline TH, East AK, Quail MA, Churcher C, Arrowsmith C, Cherevach I, Chillingworth T, Clarke K, Cronin A, Davis P, Fraser A, Hance Z, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, Whitehead S, Parkhill J.

Genome Biol. 2006;7(4):R34. Epub 2006 Apr 26. Review.

40.

The Rhizobium leguminosarum regulator IrrA affects the transcription of a wide range of genes in response to Fe availability.

Todd JD, Sawers G, Rodionov DA, Johnston AW.

Mol Genet Genomics. 2006 Jun;275(6):564-77. Epub 2006 Apr 20.

PMID:
16625355
41.

The manganese-responsive repressor Mur of Rhizobium leguminosarum is a member of the Fur-superfamily that recognizes an unusual operator sequence.

Díaz-Mireles E, Wexler M, Todd JD, Bellini D, Johnston AW, Sawers RG.

Microbiology. 2005 Dec;151(Pt 12):4071-8.

PMID:
16339952
42.

Proteomic analysis reveals the wide-ranging effects of the novel, iron-responsive regulator RirA in Rhizobium leguminosarum bv. viciae.

Todd JD, Sawers G, Johnston AW.

Mol Genet Genomics. 2005 Apr;273(2):197-206. Epub 2005 Mar 15.

PMID:
15856304
43.

RirA, an iron-responsive regulator in the symbiotic bacterium Rhizobium leguminosarum.

Todd JD, Wexler M, Sawers G, Yeoman KH, Poole PS, Johnston AW.

Microbiology. 2002 Dec;148(Pt 12):4059-71.

PMID:
12480909

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