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Items: 29

1.

Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics.

Parkinson EI, Tryon JH, Goering AW, Ju KS, McClure RA, Kemball JD, Zhukovsky S, Labeda DP, Thomson RJ, Kelleher NL, Metcalf WW.

ACS Chem Biol. 2018 Apr 20;13(4):1029-1037. doi: 10.1021/acschembio.7b01089. Epub 2018 Mar 13.

PMID:
29510029
2.

Entomopathogen ID: a curated sequence resource for entomopathogenic fungi.

Dunlap CA, Ramirez JL, Mascarin GM, Labeda DP.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):897-904. doi: 10.1007/s10482-017-0988-2. Epub 2017 Nov 23.

PMID:
29170835
3.

Streptomyces odonnellii sp. nov., a proteolytic streptomycete isolated from soil under cerrado (savanna) vegetation cover.

Pereira PHF, Macrae A, Reinert F, de Souza RF, Coelho RRR, Pötter G, Klenk HP, Labeda DP.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5211-5215. doi: 10.1099/ijsem.0.002446. Epub 2017 Oct 31.

PMID:
29087276
4.

Streptomyces asenjonii sp. nov., isolated from hyper-arid Atacama Desert soils and emended description of Streptomyces viridosporus Pridham et al. 1958.

Goodfellow M, Busarakam K, Idris H, Labeda DP, Nouioui I, Brown R, Kim BY, Del Carmen Montero-Calasanz M, Andrews BA, Bull AT.

Antonie Van Leeuwenhoek. 2017 Sep;110(9):1133-1148. doi: 10.1007/s10482-017-0886-7. Epub 2017 Jun 6.

5.

Streptomyces aridus sp. nov., isolated from a high altitude Atacama Desert soil and emended description of Streptomyces noboritoensis Isono et al. 1957.

Idris H, Labeda DP, Nouioui I, Castro JF, Del Carmen Montero-Calasanz M, Bull AT, Asenjo JA, Goodfellow M.

Antonie Van Leeuwenhoek. 2017 May;110(5):705-717. doi: 10.1007/s10482-017-0838-2. Epub 2017 Feb 9.

6.

Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis.

Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW.

Antonie Van Leeuwenhoek. 2017 Apr;110(4):563-583. doi: 10.1007/s10482-016-0824-0. Epub 2016 Dec 30.

PMID:
28039547
7.

Western Bats as a Reservoir of Novel Streptomyces Species with Antifungal Activity.

Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Lueschow S, Porras-Alfaro A.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e03057-16. doi: 10.1128/AEM.03057-16. Print 2017 Mar 1.

8.

Quinovosamycins: new tunicamycin-type antibiotics in which the α, β-1″,11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine.

Price NP, Labeda DP, Naumann TA, Vermillion KE, Bowman MJ, Berhow MA, Metcalf WW, Bischoff KM.

J Antibiot (Tokyo). 2016 Aug;69(8):637-46. doi: 10.1038/ja.2016.49. Epub 2016 May 18.

PMID:
27189123
9.

Taxonomic evaluation of species in the Streptomyces hirsutus clade using multi-locus sequence analysis and proposals to reclassify several species in this clade.

Labeda DP, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2444-50. doi: 10.1099/ijsem.0.001017. Epub 2016 Mar 11.

PMID:
26971011
10.

Taxonomic evaluation of putative Streptomyces scabiei strains held in the ARS Culture Collection (NRRL) using multi-locus sequence analysis.

Labeda DP.

Antonie Van Leeuwenhoek. 2016 Mar;109(3):349-56. doi: 10.1007/s10482-015-0637-6. Epub 2016 Jan 6.

PMID:
26739474
11.

Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.

Ju KS, Gao J, Doroghazi JR, Wang KK, Thibodeaux CJ, Li S, Metzger E, Fudala J, Su J, Zhang JK, Lee J, Cioni JP, Evans BS, Hirota R, Labeda DP, van der Donk WA, Metcalf WW.

Proc Natl Acad Sci U S A. 2015 Sep 29;112(39):12175-80. doi: 10.1073/pnas.1500873112. Epub 2015 Aug 31.

12.

A roadmap for natural product discovery based on large-scale genomics and metabolomics.

Doroghazi JR, Albright JC, Goering AW, Ju KS, Haines RR, Tchalukov KA, Labeda DP, Kelleher NL, Metcalf WW.

Nat Chem Biol. 2014 Nov;10(11):963-8. doi: 10.1038/nchembio.1659. Epub 2014 Sep 28.

13.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

14.

Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees.

Busarakam K, Bull AT, Girard G, Labeda DP, van Wezel GP, Goodfellow M.

Antonie Van Leeuwenhoek. 2014 May;105(5):849-61. doi: 10.1007/s10482-014-0139-y. Epub 2014 Mar 7.

PMID:
24604690
15.

Diversity and abundance of phosphonate biosynthetic genes in nature.

Yu X, Doroghazi JR, Janga SC, Zhang JK, Circello B, Griffin BM, Labeda DP, Metcalf WW.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20759-64. doi: 10.1073/pnas.1315107110. Epub 2013 Dec 2.

16.

An investigation of a recent outbreak of nocardioform placentitis caused abortions in horses.

Erol E, Sells SF, Williams NM, Kennedy L, Locke SJ, Labeda DP, Donahue JM, Carter CN.

Vet Microbiol. 2012 Aug 17;158(3-4):425-30. doi: 10.1016/j.vetmic.2012.02.023. Epub 2012 Feb 21.

PMID:
22410309
17.
18.

Genome sequences of three tunicamycin-producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396.

Doroghazi JR, Ju KS, Brown DW, Labeda DP, Deng Z, Metcalf WW, Chen W, Price NP.

J Bacteriol. 2011 Dec;193(24):7021-2. doi: 10.1128/JB.06262-11.

19.

A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.

Chen Y, Ntai I, Ju KS, Unger M, Zamdborg L, Robinson SJ, Doroghazi JR, Labeda DP, Metcalf WW, Kelleher NL.

J Proteome Res. 2012 Jan 1;11(1):85-94. doi: 10.1021/pr2009115. Epub 2011 Oct 25.

20.

Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces.

Labeda DP.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2525-31. doi: 10.1099/ijs.0.028514-0. Epub 2010 Nov 26.

PMID:
21112986
21.

Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009.

von Jan M, Riegger N, Pötter G, Schumann P, Verbarg S, Spröer C, Rohde M, Lauer B, Labeda DP, Klenk HP.

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2304-10. doi: 10.1099/ijs.0.026179-0. Epub 2010 Oct 22.

PMID:
20971832
22.

Reclassification of 'Dactylosporangium variesporum' as Saccharothrix variisporea corrig. (ex Tomita et al. 1977) sp. nov., nom. rev.

Kim BY, Brown R, Labeda DP, Goodfellow M.

Int J Syst Evol Microbiol. 2011 Feb;61(Pt 2):310-4. doi: 10.1099/ijs.0.021857-0. Epub 2010 Mar 19.

PMID:
20305067
23.

Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra.

Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI.

Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1708-14. doi: 10.1099/ijs.0.004572-0. Epub 2009 Jun 19.

PMID:
19542122
24.

Reclassification of Streptomyces caeruleus as a synonym of Actinoalloteichus cyanogriseus and reclassification of Streptomyces spheroides and Streptomyces laceyi as later synonyms of Streptomyces niveus.

Tamura T, Ishida Y, Otoguro M, Hatano K, Labeda D, Price NP, Suzuki K.

Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2812-4. doi: 10.1099/ijs.0.65560-0.

PMID:
19060064
25.

Production of 10-hydroxy-8(E)-octadecenoic acid from oleic acid conversion by strains of Pseudomonas aeruginosa.

Kuo TM, Huang JK, Labeda D, Wen L, Knothe G.

Curr Microbiol. 2008 Nov;57(5):437-41. doi: 10.1007/s00284-008-9226-5. Epub 2008 Aug 14.

PMID:
18704576
26.

The Streptomyces violaceusniger clade: a home for Streptomycetes with rugose ornamented spores.

Goodfellow M, Kumar Y, Labeda DP, Sembiring L.

Antonie Van Leeuwenhoek. 2007 Aug;92(2):173-99. Epub 2007 Apr 4.

PMID:
17407000
27.

Evaluation of microbial strains for linoleic acid hydroxylation and reclassification of strain ALA2.

Hou CT, Labeda DP, Rooney A.

Antonie Van Leeuwenhoek. 2005 Aug;88(2):167-71.

PMID:
16096693
29.

Enantioselective hydrolysis of butyl 2-ethylhexanoate by a strain of Nocardia corynebacteroides.

Labeda DP, Jackson MA, Kuo TM, Nakamura LK.

Curr Microbiol. 2004 Aug;49(2):133-5.

PMID:
15297919

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