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Items: 1 to 20 of 121

1.

Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution.

Kim J, Kim I, Yang JS, Shin YE, Hwang J, Park S, Choi YS, Kim S.

PLoS Genet. 2012 Feb;8(2):e1002510. doi: 10.1371/journal.pgen.1002510. Epub 2012 Feb 9.

2.

Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins.

Frietze KK, Pappy AL 2nd, Melson JW, O'Driscoll EE, Tyler CM, Perlman DH, Boulanger LM.

BMC Immunol. 2016 Jul 19;17(1):24. doi: 10.1186/s12865-016-0154-z.

3.

Protein interacting with C-kinase 1 (PICK1) binding promiscuity relies on unconventional PSD-95/discs-large/ZO-1 homology (PDZ) binding modes for nonclass II PDZ ligands.

Erlendsson S, Rathje M, Heidarsson PO, Poulsen FM, Madsen KL, Teilum K, Gether U.

J Biol Chem. 2014 Sep 5;289(36):25327-40. doi: 10.1074/jbc.M114.548743. Epub 2014 Jul 13.

4.

Evolutionary expansion and specialization of the PDZ domains.

Sakarya O, Conaco C, Egecioglu O, Solla SA, Oakley TH, Kosik KS.

Mol Biol Evol. 2010 May;27(5):1058-69. doi: 10.1093/molbev/msp311. Epub 2009 Dec 21.

PMID:
20026484
5.

Structural and thermodynamic analysis of PDZ-ligand interactions.

Shepherd TR, Fuentes EJ.

Methods Enzymol. 2011;488:81-100. doi: 10.1016/B978-0-12-381268-1.00004-5.

6.

Molecular evolution of the LNX gene family.

Flynn M, Saha O, Young P.

BMC Evol Biol. 2011 Aug 9;11:235. doi: 10.1186/1471-2148-11-235.

7.

Predicting PDZ domain mediated protein interactions from structure.

Hui S, Xing X, Bader GD.

BMC Bioinformatics. 2013 Jan 21;14:27. doi: 10.1186/1471-2105-14-27.

8.

A specificity map for the PDZ domain family.

Tonikian R, Zhang Y, Sazinsky SL, Currell B, Yeh JH, Reva B, Held HA, Appleton BA, Evangelista M, Wu Y, Xin X, Chan AC, Seshagiri S, Lasky LA, Sander C, Boone C, Bader GD, Sidhu SS.

PLoS Biol. 2008 Sep 30;6(9):e239. doi: 10.1371/journal.pbio.0060239.

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11.

Evolutionarily conserved bias of amino-acid usage refines the definition of PDZ-binding motif.

Chimura T, Launey T, Ito M.

BMC Genomics. 2011 Jun 8;12:300. doi: 10.1186/1471-2164-12-300.

12.

The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.

Liu X, Shepherd TR, Murray AM, Xu Z, Fuentes EJ.

Structure. 2013 Mar 5;21(3):342-54. doi: 10.1016/j.str.2013.01.004. Epub 2013 Feb 7.

13.

Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain.

Skelton NJ, Koehler MF, Zobel K, Wong WL, Yeh S, Pisabarro MT, Yin JP, Lasky LA, Sidhu SS.

J Biol Chem. 2003 Feb 28;278(9):7645-54. Epub 2002 Nov 20.

14.

Discovery and confirmation of ligand binding specificities of the Schistosoma japonicum polarity protein Scribble.

Cai P, Mu Y, Piao X, Hou N, Liu S, Gao Y, Wang H, Chen Q.

PLoS Negl Trop Dis. 2014 May 1;8(5):e2837. doi: 10.1371/journal.pntd.0002837. eCollection 2014 May.

15.

The human PDZome: a gateway to PSD95-Disc large-zonula occludens (PDZ)-mediated functions.

Belotti E, Polanowska J, Daulat AM, Audebert S, Thomé V, Lissitzky JC, Lembo F, Blibek K, Omi S, Lenfant N, Gangar A, Montcouquiol M, Santoni MJ, Sebbagh M, Aurrand-Lions M, Angers S, Kodjabachian L, Reboul J, Borg JP.

Mol Cell Proteomics. 2013 Sep;12(9):2587-603. doi: 10.1074/mcp.O112.021022. Epub 2013 May 30.

16.

Importance of a Conserved Lys/Arg Residue for Ligand/PDZ Domain Interactions as Examined by Protein Semisynthesis.

Pedersen SW, Moran GE, Sereikaitė V, Haugaard-Kedström LM, Strømgaard K.

Chembiochem. 2016 Oct 17;17(20):1936-1944. doi: 10.1002/cbic.201600322. Epub 2016 Sep 7.

PMID:
27472651
17.

Plasticity of PDZ domains in ligand recognition and signaling.

Ivarsson Y.

FEBS Lett. 2012 Aug 14;586(17):2638-47. doi: 10.1016/j.febslet.2012.04.015. Epub 2012 Apr 21. Review.

18.

A structural portrait of the PDZ domain family.

Ernst A, Appleton BA, Ivarsson Y, Zhang Y, Gfeller D, Wiesmann C, Sidhu SS.

J Mol Biol. 2014 Oct 23;426(21):3509-19. doi: 10.1016/j.jmb.2014.08.012. Epub 2014 Aug 23.

PMID:
25158098
19.

Rapid characterization of the binding property of HtrA2/Omi PDZ domain by validation screening of PDZ ligand library.

Ma S, Song E, Gao S, Tian R, Gao Y.

Sci China C Life Sci. 2007 Jun;50(3):412-22.

PMID:
17609899
20.

The binding affinities of proteins interacting with the PDZ domain of PICK1.

Bolia A, Gerek ZN, Keskin O, Banu Ozkan S, Dev KK.

Proteins. 2012 May;80(5):1393-408. doi: 10.1002/prot.24034. Epub 2012 Feb 24.

PMID:
22275068

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