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Items: 1 to 20 of 137

1.

Molecular evolution of protein conformational changes revealed by a network of evolutionarily coupled residues.

Jeon J, Nam HJ, Choi YS, Yang JS, Hwang J, Kim S.

Mol Biol Evol. 2011 Sep;28(9):2675-85. doi: 10.1093/molbev/msr094. Epub 2011 Apr 6.

PMID:
21470969
2.

Protein structure and folding: a new start.

Berezovsky IN, Trifonov EN.

J Biomol Struct Dyn. 2001 Dec;19(3):397-403. Review.

PMID:
11790139
3.

Fold change in evolution of protein structures.

Grishin NV.

J Struct Biol. 2001 May-Jun;134(2-3):167-85. Review.

PMID:
11551177
4.

Evolutionary conservation of the folding nucleus.

Mirny L, Shakhnovich E.

J Mol Biol. 2001 Apr 27;308(2):123-9.

PMID:
11327757
5.

Evolution of protein sequences and structures.

Wood TC, Pearson WR.

J Mol Biol. 1999 Aug 27;291(4):977-95.

PMID:
10452901
6.

On evolutionary conservation of thermodynamic coupling in proteins.

Fodor AA, Aldrich RW.

J Biol Chem. 2004 Apr 30;279(18):19046-50. Epub 2004 Mar 15.

7.

Evolutionary conservation in protein folding kinetics.

Plaxco KW, Larson S, Ruczinski I, Riddle DS, Thayer EC, Buchwitz B, Davidson AR, Baker D.

J Mol Biol. 2000 Apr 28;298(2):303-12.

PMID:
10764599
8.

When protein folding is simplified to protein coiling: the continuum of solenoid protein structures.

Kobe B, Kajava AV.

Trends Biochem Sci. 2000 Oct;25(10):509-15. Review.

PMID:
11050437
9.

Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design.

Humphris EL, Kortemme T.

Structure. 2008 Dec 10;16(12):1777-88. doi: 10.1016/j.str.2008.09.012.

10.

Distinct stages of protein evolution as suggested by protein sequence analysis.

Trifonov EN, Kirzhner A, Kirzhner VM, Berezovsky IN.

J Mol Evol. 2001 Oct-Nov;53(4-5):394-401.

PMID:
11675599
11.

A biological cosmos of parallel universes: does protein structural plasticity facilitate evolution?

Meier S, Ozbek S.

Bioessays. 2007 Nov;29(11):1095-104. Review.

PMID:
17935152
12.

Networks of coevolving sites in structural and functional domains of serpin proteins.

Buck MJ, Atchley WR.

Mol Biol Evol. 2005 Jul;22(7):1627-34. Epub 2005 Apr 27.

PMID:
15858204
13.

A functional role for protein cavities in domain: domain motions.

Hubbard SJ, Argos P.

J Mol Biol. 1996 Aug 16;261(2):289-300.

PMID:
8757295
15.

Protein-segment universe exhibiting transitions at intermediate segment length in conformational subspaces.

Ikeda K, Hirokawa T, Higo J, Tomii K.

BMC Struct Biol. 2008 Aug 13;8:37. doi: 10.1186/1472-6807-8-37.

16.

Are residues in a protein folding nucleus evolutionarily conserved?

Tseng YY, Liang J.

J Mol Biol. 2004 Jan 23;335(4):869-80.

PMID:
14698285
17.

Loopy proteins appear conserved in evolution.

Liu J, Tan H, Rost B.

J Mol Biol. 2002 Sep 6;322(1):53-64.

PMID:
12215414
18.

Evolution of function in protein superfamilies, from a structural perspective.

Todd AE, Orengo CA, Thornton JM.

J Mol Biol. 2001 Apr 6;307(4):1113-43.

PMID:
11286560
19.

Structural clusters of evolutionary trace residues are statistically significant and common in proteins.

Madabushi S, Yao H, Marsh M, Kristensen DM, Philippi A, Sowa ME, Lichtarge O.

J Mol Biol. 2002 Feb 8;316(1):139-54.

PMID:
11829509

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